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Lcy13g005990 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy13g005990
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionGABA transporter 1
Genome locationChr13:5225630..5226829
RNA-Seq ExpressionLcy13g005990
SyntenyLcy13g005990
Gene Ontology termsGO:0006865 - amino acid transport (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0015293 - symporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKU71794.1 GABA transporter 1 [Dendrobium catenatum]3.1e-1657.5Show/hide
Query:  MQFGVCYGAVVFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
        +QF +C+ AVV G LL GQ +KVYL+PTNEV E  FADP K Q+S RN++PR+I  S+ V V TI AAM PFF D++A++
Subjt:  MQFGVCYGAVVFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
XP_004142454.1 GABA transporter 1 [Cucumis sativus]3.1e-1684.48Show/hide
Query:  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
        VYL+PTNE FEKKFADPNK QFSIRNIVPRLIS SLSVV+ATI AAM PFF DLMAL+
Subjt:  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
XP_008446789.1 PREDICTED: GABA transporter 1-like isoform X1 [Cucumis melo]9.0e-1668.57Show/hide
Query:  VFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
        +F +L       VYL+PTNE FEK+FADPNK QFSIRN++PRLIS SLSVV+ATI AAM PFF DLMAL+
Subjt:  VFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
XP_008446790.1 PREDICTED: GABA transporter 1-like isoform X2 [Cucumis melo]9.0e-1668.57Show/hide
Query:  VFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
        +F +L       VYL+PTNE FEK+FADPNK QFSIRN++PRLIS SLSVV+ATI AAM PFF DLMAL+
Subjt:  VFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
XP_022139295.1 GABA transporter 1 [Momordica charantia]1.8e-1682.76Show/hide
Query:  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
        VYL+PTNE FEKKFADPNK QFSIRN+VPRLI+ SLSVV+ATIFAAM PFF DLMAL+
Subjt:  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
TrEMBL top hitse value%identityAlignment
A0A0A0KRH2 Aa_trans domain-containing protein1.5e-1684.48Show/hide
Query:  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
        VYL+PTNE FEKKFADPNK QFSIRNIVPRLIS SLSVV+ATI AAM PFF DLMAL+
Subjt:  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
A0A1S3BFE9 GABA transporter 1-like isoform X14.4e-1668.57Show/hide
Query:  VFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
        +F +L       VYL+PTNE FEK+FADPNK QFSIRN++PRLIS SLSVV+ATI AAM PFF DLMAL+
Subjt:  VFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
A0A1S3BFY3 GABA transporter 1-like isoform X24.4e-1668.57Show/hide
Query:  VFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
        +F +L       VYL+PTNE FEK+FADPNK QFSIRN++PRLIS SLSVV+ATI AAM PFF DLMAL+
Subjt:  VFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
A0A2I0W806 GABA transporter 11.5e-1657.5Show/hide
Query:  MQFGVCYGAVVFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
        +QF +C+ AVV G LL GQ +KVYL+PTNEV E  FADP K Q+S RN++PR+I  S+ V V TI AAM PFF D++A++
Subjt:  MQFGVCYGAVVFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
A0A6J1CBX9 GABA transporter 18.8e-1782.76Show/hide
Query:  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
        VYL+PTNE FEKKFADPNK QFSIRN+VPRLI+ SLSVV+ATIFAAM PFF DLMAL+
Subjt:  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
SwissProt top hitse value%identityAlignment
F4HW02 GABA transporter 17.0e-1156.9Show/hide
Query:  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
        VYL+P N++ E   +DP K +FSIRN++PRL+  SL VV+ATI AAM PFF D+ +LL
Subjt:  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
Q8L4X4 Probable GABA transporter 29.7e-0543.06Show/hide
Query:  AVVFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
        AV+F +L       VY +   E+ EKK AD  K  FS RN+VPRLI  +L +      AAM PFF D+ A++
Subjt:  AVVFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
Arabidopsis top hitse value%identityAlignment
AT1G08230.2 Transmembrane amino acid transporter family protein4.9e-1256.9Show/hide
Query:  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
        VYL+P N++ E   +DP K +FSIRN++PRL+  SL VV+ATI AAM PFF D+ +LL
Subjt:  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
AT5G41800.1 Transmembrane amino acid transporter family protein6.9e-0643.06Show/hide
Query:  AVVFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL
        AV+F +L       VY +   E+ EKK AD  K  FS RN+VPRLI  +L +      AAM PFF D+ A++
Subjt:  AVVFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATTTGGAGTATGCTATGGTGCTGTTGTTTTTGGAATTCTTCTAGGTGGTCAAGACCTAAAGGTTTACTTACGACCAACAAACGAAGTATTTGAGAAGAAATTTGC
AGATCCAAATAAAATTCAATTTTCGATCCGCAACATTGTGCCGAGGTTGATATCGTGGTCATTGTCGGTGGTCGTTGCCACCATTTTTGCAGCAATGTTTCCTTTCTTTA
GGGATCTAATGGCACTATTATATTGGGAGCATTTGGATGCATTCCTATTGACTTCATCATGGCTATGGTTTTCTACAATGCGACTTTCAAGCTTTCAAAGGGCAGCCTTG
TTTTTTGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAATTTGGAGTATGCTATGGTGCTGTTGTTTTTGGAATTCTTCTAGGTGGTCAAGACCTAAAGGTTTACTTACGACCAACAAACGAAGTATTTGAGAAGAAATTTGC
AGATCCAAATAAAATTCAATTTTCGATCCGCAACATTGTGCCGAGGTTGATATCGTGGTCATTGTCGGTGGTCGTTGCCACCATTTTTGCAGCAATGTTTCCTTTCTTTA
GGGATCTAATGGCACTATTATATTGGGAGCATTTGGATGCATTCCTATTGACTTCATCATGGCTATGGTTTTCTACAATGCGACTTTCAAGCTTTCAAAGGGCAGCCTTG
TTTTTTGGGTAA
Protein sequenceShow/hide protein sequence
MQFGVCYGAVVFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALLYWEHLDAFLLTSSWLWFSTMRLSSFQRAAL
FFG