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Lcy13g011900 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy13g011900
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr13:14479484..14481167
RNA-Seq ExpressionLcy13g011900
SyntenyLcy13g011900
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ54504.1 putative ribonuclease H-like domain-containing protein [Rosa chinensis]4.7e-1233.96Show/hide
Query:  WSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADGEL--------------------------------GFAEFVVETDSLRLVKILHGDLHDVSEVGLL
        W  PP+ +LKLNVD + + DTG+ G G V+R  +G                                  G     +ETD   +   L GD  D+SEVG +
Subjt:  WSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADGEL--------------------------------GFAEFVVETDSLRLVKILHGDLHDVSEVGLL

Query:  MDDIRGILHPWDNGKVLFTPRQENKVAHVLASLAFS-YVDRVWLEEWPSEISDVLRGDA
        ++D +  L    +  +    R+ N VAH LA LA S YVD  WLEE P  I DVL  D+
Subjt:  MDDIRGILHPWDNGKVLFTPRQENKVAHVLASLAFS-YVDRVWLEEWPSEISDVLRGDA

PRQ55763.1 putative RNA-directed DNA polymerase [Rosa chinensis]8.0e-1232.74Show/hide
Query:  QSSDREERCVWSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADGELGFA--------------------------------EFVVETDSLRLVKILHGD
        Q      R  W  PP  +LK+N+D S RP++G+ G G V+R   G    A                                EF++E+D   +V  L+ +
Subjt:  QSSDREERCVWSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADGELGFA--------------------------------EFVVETDSLRLVKILHGD

Query:  LHDVSEVGLLMDDIRGILHPWDNGKVLFTPRQENKVAHVLASLAFS-YVDRVWLEEWPSEISDVLRGD
        L D SEVG ++DD +  L    + K+    R+ N VA+ LA LA S +++ VWLEE P  I DVL  D
Subjt:  LHDVSEVGLLMDDIRGILHPWDNGKVLFTPRQENKVAHVLASLAFS-YVDRVWLEEWPSEISDVLRGD

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]7.8e-1532.67Show/hide
Query:  DLWAYSSDYLSAFHSGGRRCLAG--DCLRPQSSDREERCVWSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADG-------------------------
        DL ++S +YL  + +  R   +    C  P+ +      +W PP A  LK+NVDA+ R ++  AG G ++R + G                         
Subjt:  DLWAYSSDYLSAFHSGGRRCLAG--DCLRPQSSDREERCVWSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADG-------------------------

Query:  -------ELGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPW-DNGKVLFTPRQENKVAHVLASLAFSYVD-RVWLEEWPSEISDVLRGDA
               E GF  F +ETDSLR+  +L  D  D SEVG+L   I+  L    +     FT R  N  AH+LA LA +    ++W+EEWP EIS VL  D 
Subjt:  -------ELGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPW-DNGKVLFTPRQENKVAHVLASLAFSYVD-RVWLEEWPSEISDVLRGDA

Query:  GS
         S
Subjt:  GS

XP_040372923.1 uncharacterized protein LOC121052282 [Rosa chinensis]2.3e-1133.09Show/hide
Query:  WSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADG---------ELGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTPRQE
        W  PP+ +LKLN+D S   D+G  G G V+R  +            G     +ET+   +V  ++GD+ D+SE+G +++D +  L    + +V    R+ 
Subjt:  WSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADG---------ELGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTPRQE

Query:  NKVAHVLASL-AFSYVDRVWLEEWPSEISDVLRGDA
        N +AH LA L + SY+D  WLEE    I + L  D+
Subjt:  NKVAHVLASL-AFSYVDRVWLEEWPSEISDVLRGDA

XP_042964529.1 uncharacterized protein LOC122298728 [Carya illinoinensis]8.0e-1232.73Show/hide
Query:  SSDREERCVWSPPPARKLKLNVDASVRPDTGEAGGGCVMRGAD--------------------------------GELGFAEFVVETDSLRLVKILHGDL
        S +REER  W+ P  + +K+N DA+VR D  + G G V+R  +                                 ELGF+  V+E D+  +VK  +   
Subjt:  SSDREERCVWSPPPARKLKLNVDASVRPDTGEAGGGCVMRGAD--------------------------------GELGFAEFVVETDSLRLVKILHGDL

Query:  HDVSEVGLLMDDIRGILHPWDNGKVLFTPRQENKVAHVLASLAFSY-VDRVWLEEWPSEISDVLR
           +  G +M+++RG L   ++ K+ F  R+ N VAH+LA  AF+Y  +RVW+EE P EI  VL+
Subjt:  HDVSEVGLLMDDIRGILHPWDNGKVLFTPRQENKVAHVLASLAFSY-VDRVWLEEWPSEISDVLR

TrEMBL top hitse value%identityAlignment
A0A2P6S796 Putative ribonuclease H-like domain-containing protein2.3e-1233.96Show/hide
Query:  WSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADGEL--------------------------------GFAEFVVETDSLRLVKILHGDLHDVSEVGLL
        W  PP+ +LKLNVD + + DTG+ G G V+R  +G                                  G     +ETD   +   L GD  D+SEVG +
Subjt:  WSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADGEL--------------------------------GFAEFVVETDSLRLVKILHGDLHDVSEVGLL

Query:  MDDIRGILHPWDNGKVLFTPRQENKVAHVLASLAFS-YVDRVWLEEWPSEISDVLRGDA
        ++D +  L    +  +    R+ N VAH LA LA S YVD  WLEE P  I DVL  D+
Subjt:  MDDIRGILHPWDNGKVLFTPRQENKVAHVLASLAFS-YVDRVWLEEWPSEISDVLRGDA

A0A2P6SAP1 Putative RNA-directed DNA polymerase3.9e-1232.74Show/hide
Query:  QSSDREERCVWSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADGELGFA--------------------------------EFVVETDSLRLVKILHGD
        Q      R  W  PP  +LK+N+D S RP++G+ G G V+R   G    A                                EF++E+D   +V  L+ +
Subjt:  QSSDREERCVWSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADGELGFA--------------------------------EFVVETDSLRLVKILHGD

Query:  LHDVSEVGLLMDDIRGILHPWDNGKVLFTPRQENKVAHVLASLAFS-YVDRVWLEEWPSEISDVLRGD
        L D SEVG ++DD +  L    + K+    R+ N VA+ LA LA S +++ VWLEE P  I DVL  D
Subjt:  LHDVSEVGLLMDDIRGILHPWDNGKVLFTPRQENKVAHVLASLAFS-YVDRVWLEEWPSEISDVLRGD

A0A5C7ITL2 RNase H domain-containing protein1.1e-1131.45Show/hide
Query:  WSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADG--------------------------------ELGFAEFVVETDSLRLVKILHGDLHDVSEVGLL
        WSPP     K+N DA+ R   G +G GCV+R +DG                                ELG    V+E+D+L +V+ +      +SEVG++
Subjt:  WSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADG--------------------------------ELGFAEFVVETDSLRLVKILHGDLHDVSEVGLL

Query:  MDDIRGILHPWDNGKVLFTPRQENKVAHVLASLAFSYVDR-VWLEEWPSEISDVLRGDA
        + DI  I   +    + F PR  NKV H LA LA  +V R VW+ + P  +  ++ GD+
Subjt:  MDDIRGILHPWDNGKVLFTPRQENKVAHVLASLAFSYVDR-VWLEEWPSEISDVLRGDA

A0A6J1DBJ7 uncharacterized protein LOC1110189733.8e-1532.67Show/hide
Query:  DLWAYSSDYLSAFHSGGRRCLAG--DCLRPQSSDREERCVWSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADG-------------------------
        DL ++S +YL  + +  R   +    C  P+ +      +W PP A  LK+NVDA+ R ++  AG G ++R + G                         
Subjt:  DLWAYSSDYLSAFHSGGRRCLAG--DCLRPQSSDREERCVWSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADG-------------------------

Query:  -------ELGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPW-DNGKVLFTPRQENKVAHVLASLAFSYVD-RVWLEEWPSEISDVLRGDA
               E GF  F +ETDSLR+  +L  D  D SEVG+L   I+  L    +     FT R  N  AH+LA LA +    ++W+EEWP EIS VL  D 
Subjt:  -------ELGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPW-DNGKVLFTPRQENKVAHVLASLAFSYVD-RVWLEEWPSEISDVLRGDA

Query:  GS
         S
Subjt:  GS

A0A6P5S7Q3 uncharacterized protein LOC1107532617.3e-1131.71Show/hide
Query:  EERCVWSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADGEL--------------------------------GFAEFVVETDSLRLVKILHGDLHDV-
        E+   WSPPP  + KLNVDA+  P+TG +G G V+R   GE+                                GF+ F++E+DS  +V  +  D  +  
Subjt:  EERCVWSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADGEL--------------------------------GFAEFVVETDSLRLVKILHGDLHDV-

Query:  SEVGLLMDDIRGILHPWDNGKVLFTPRQENKVAHVLASLAFSYVDRV-WLEEWPSEISDVLRGD
        +  G L+DDI+  L  ++   + F+PR+ N+VAH LA  A +  + V W+EE P  +  V+  D
Subjt:  SEVGLLMDDIRGILHPWDNGKVLFTPRQENKVAHVLASLAFSYVDRV-WLEEWPSEISDVLRGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.2e-0625.93Show/hide
Query:  RRCLAGDCLRPQSSDREERCVWSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADG--------------------------------ELGFAEFVVETD
        RR L G    PQ  +R     W  PP + +K N DA+ + +    G G ++R   G                                   +   + E+D
Subjt:  RRCLAGDCLRPQSSDREERCVWSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADG--------------------------------ELGFAEFVVETD

Query:  SLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTPRQENKVAHVLA--SLAFSYVD
        +  LV +L+ D      +   ++DI+ +LH ++  K  FTPR  NKVA  +A  S++FS  D
Subjt:  SLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTPRQENKVAHVLA--SLAFSYVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCTGTTTTTGGTGTCAGTAGACCCCTCTCCCAACAGGATTTTGCCGACGTCACTCTCGACGCCTGTAATTTATGGTCGGGATTTGTGGGCATACTCGAGC
GACTACCTCAGTGCCTTCCATTCTGGGGGGAGGCGTTGTCTTGCAGGGGATTGCCTACGGCCGCAATCAAGTGATCGTGAGGAGCGTTGTGTATGGAGTCCGCCT
CCTGCTAGGAAGCTGAAACTTAATGTTGATGCTTCTGTCAGGCCTGATACAGGAGAAGCGGGGGGTGGCTGTGTGATGCGTGGGGCTGATGGTGAGTTGGGGTTT
GCGGAGTTTGTGGTAGAGACTGACTCGCTGAGGTTAGTCAAAATCCTCCATGGTGATCTGCATGATGTCTCGGAAGTGGGGCTGTTAATGGATGACATTCGAGGG
ATCCTCCACCCTTGGGACAACGGTAAGGTTTTGTTTACACCACGTCAGGAAAACAAGGTGGCGCATGTTCTGGCTAGCTTGGCCTTTTCATATGTTGACCGTGTT
TGGCTTGAAGAGTGGCCCAGCGAAATCTCGGACGTCCTGAGGGGTGATGCTGGTTCAGCTGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCACCTGTTTTTGGTGTCAGTAGACCCCTCTCCCAACAGGATTTTGCCGACGTCACTCTCGACGCCTGTAATTTATGGTCGGGATTTGTGGGCATACTCGAGC
GACTACCTCAGTGCCTTCCATTCTGGGGGGAGGCGTTGTCTTGCAGGGGATTGCCTACGGCCGCAATCAAGTGATCGTGAGGAGCGTTGTGTATGGAGTCCGCCT
CCTGCTAGGAAGCTGAAACTTAATGTTGATGCTTCTGTCAGGCCTGATACAGGAGAAGCGGGGGGTGGCTGTGTGATGCGTGGGGCTGATGGTGAGTTGGGGTTT
GCGGAGTTTGTGGTAGAGACTGACTCGCTGAGGTTAGTCAAAATCCTCCATGGTGATCTGCATGATGTCTCGGAAGTGGGGCTGTTAATGGATGACATTCGAGGG
ATCCTCCACCCTTGGGACAACGGTAAGGTTTTGTTTACACCACGTCAGGAAAACAAGGTGGCGCATGTTCTGGCTAGCTTGGCCTTTTCATATGTTGACCGTGTT
TGGCTTGAAGAGTGGCCCAGCGAAATCTCGGACGTCCTGAGGGGTGATGCTGGTTCAGCTGCGTGA
Protein sequenceShow/hide protein sequence
MHLFLVSVDPSPNRILPTSLSTPVIYGRDLWAYSSDYLSAFHSGGRRCLAGDCLRPQSSDREERCVWSPPPARKLKLNVDASVRPDTGEAGGGCVMRGADGELGF
AEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTPRQENKVAHVLASLAFSYVDRVWLEEWPSEISDVLRGDAGSAA