CuGenDBv2

Gene ID	Lcy13g011990
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	28S ribosomal protein S33, mitochondrial
Genome location	Chr13:14652688..14653826
RNA-Seq Expression	Lcy13g011990
Synteny	Lcy13g011990
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8652638.1 hypothetical protein Csa_013164 [Cucumis sativus]

1.9e-44

95.1

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_004145134.1 28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus]

1.9e-44

95.1

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_022137168.1 28S ribosomal protein S33, mitochondrial [Momordica charantia]

1.4e-44

96.08

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSI+A AVN GVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_023000758.1 28S ribosomal protein S33, mitochondrial [Cucurbita maxima]

4.1e-44

93.14

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK ++AAAVNKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_031745997.1 uncharacterized protein LOC101219254 isoform X1 [Cucumis sativus]

1.9e-44

95.1

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRA7 Uncharacterized protein

9.0e-45

95.1

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A5A7UM66 28S ribosomal protein S33

7.6e-44

93.14

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS++AAAV+KGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1C6H4 28S ribosomal protein S33, mitochondrial

6.9e-45

96.08

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSI+A AVN GVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1EDC3 28S ribosomal protein S33, mitochondrial

4.5e-44

92.16

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK ++AAA+NKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1KNI8 28S ribosomal protein S33, mitochondrial

2.0e-44

93.14

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK ++AAAVNKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

SwissProt top hits

e value

%identity

Alignment

P53305 Mitochondrial 37S ribosomal protein S27

8.8e-05

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Query:  VTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPY-DIKK--------DDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAA
        V E  A+IF    NP+G+R+  K+L ++L G  V+ +Y   DI K         D   +  +EQ RLS +E  KRRGKG PKK +   AA
Subjt:  VTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPY-DIKK--------DDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAA

Arabidopsis top hits

e value

%identity

Alignment

AT5G44710.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

1.1e-39

76.47

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MA+ SLKS++++AV +GVTEARARIFGH+LNPTG RS HK+LRKKLIGDKV++WYPYDIK +DP V+AR+E+ER+SKLEMLKRR KGPPKKG G+RAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

Sequences

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CDS sequence

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ATGGCTACTAATAGCCTGAAGAGTATTGTTGCTGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCATGTACTTAACCCAACAGGACTA
CGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTGTCACAGTGGTATCCATACGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGTCAA
GAACAAGAGCGCTTGTCCAAGCTTGAAATGCTGAAGCGGCGTGGTAAAGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAATAAGTAG

mRNA sequence

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Protein sequence

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MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK

Lcy13g011990 (gene) of Sponge gourd (P93075) v1 genome