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Lcy13g012500 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy13g012500
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationChr13:16892694..16893336
RNA-Seq ExpressionLcy13g012500
SyntenyLcy13g012500
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056761.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.5e-1387.23Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
        MSIK S K+LPDLSKLEPLDG+NYR WSQKLLIFFEQLEVDY LTTD
Subjt:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.5e-1387.23Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
        MSIK S K+LPDLSKLEPLDG+NYR WSQKLLIFFEQLEVDY LTTD
Subjt:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.5e-1387.23Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
        MSIK S K+LPDLSKLEPLDG+NYR WSQKLLIFFEQLEVDY LTTD
Subjt:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
TYK07981.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.5e-1387.23Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
        MSIK S K+LPDLSKLEPLDG+NYR WSQKLLIFFEQLEVDY LTTD
Subjt:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
XP_008456453.1 PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo]8.5e-1387.23Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
        MSIK S K+LPDLSKLEPLDG+NYR WSQKLLIFFEQLEVDY LTTD
Subjt:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
TrEMBL top hitse value%identityAlignment
A0A5A7SKK3 Ty1-copia retrotransposon protein4.1e-1387.23Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
        MSIK S K+LPDLSKLEPLDG+NYR WSQKLLIFFEQLEVDY LTTD
Subjt:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
A0A5A7V1I1 Ty1-copia retrotransposon protein4.1e-1387.23Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
        MSIK S K+LPDLSKLEPLDG+NYR WSQKLLIFFEQLEVDY LTTD
Subjt:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
A0A5A7VIG3 Ty1-copia retrotransposon protein4.1e-1387.23Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
        MSIK S K+LPDLSKLEPLDG+NYR WSQKLLIFFEQLEVDY LTTD
Subjt:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
A0A5D3C5T2 Ty1-copia retrotransposon protein4.1e-1387.23Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
        MSIK S K+LPDLSKLEPLDG+NYR WSQKLLIFFEQLEVDY LTTD
Subjt:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
A0A5D3D7X7 Ty1-copia retrotransposon protein4.1e-1387.23Show/hide
Query:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
        MSIK S K+LPDLSKLEPLDG+NYR WSQKLLIFFEQLEVDY LTTD
Subjt:  MSIK-SGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAAGCCGTCCAACCGTCAGTTCCGCGCACGTTCTTTGACCATGTCCATCAAATCCGGGAAGGTGCTTCCAGATCTATCCAAGCTAGAACCTTTGGATGGT
TCTAACTACCGTGGCTGGTCTCAGAAGCTGCTCATCTTCTTCGAACAACTGGAGGTCGACTACACTCTGACCACCGATTATGTGGAGAAATCAGCAACACCTGCC
GCTGATCTGGAAAAATTTAAGGAAGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGAAGCCGTCCAACCGTCAGTTCCGCGCACGTTCTTTGACCATGTCCATCAAATCCGGGAAGGTGCTTCCAGATCTATCCAAGCTAGAACCTTTGGATGGT
TCTAACTACCGTGGCTGGTCTCAGAAGCTGCTCATCTTCTTCGAACAACTGGAGGTCGACTACACTCTGACCACCGATTATGTGGAGAAATCAGCAACACCTGCC
GCTGATCTGGAAAAATTTAAGGAAGTCTAG
Protein sequenceShow/hide protein sequence
MLKPSNRQFRARSLTMSIKSGKVLPDLSKLEPLDGSNYRGWSQKLLIFFEQLEVDYTLTTDYVEKSATPAADLEKFKEV