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Lsi01G000240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G000240
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein
Genome locationchr01:282681..285109
RNA-Seq ExpressionLsi01G000240
SyntenyLsi01G000240
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052430.1 uncharacterized protein E6C27_scaffold120G00260 [Cucumis melo var. makuwa]6.9e-8493.6Show/hide
Query:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA
        MSATLLSYCNPSLACNY RMD KRMA  HLRSIGRRNNG+RKLTVFAVTEGSAKSSESEETIPSWAK DSEEPPPWA+EE KE GTQQGFQVPFYVYLLA
Subjt:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA

Query:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL
        SSITAIAAIGSVFEYVNQKPVFGIINSDS+LYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDR+DGYL
Subjt:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL
XP_004153846.1 uncharacterized protein LOC101218426 isoform X2 [Cucumis sativus]4.8e-8594.19Show/hide
Query:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA
        MSATLLSYCNPSL CNYGRMD KRMA  HLRS GRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAK DSEEPPPWA+EEGKEIGTQQGFQVPFYVYLLA
Subjt:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA

Query:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL
        SSITAIAAIGSVFEYVNQKPVFGIINSDS+LYAPLLGFFA TGIPTAAFLWFKSVEVANKEAEDQDR+DGYL
Subjt:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL
XP_016899276.1 PREDICTED: uncharacterized protein LOC103484254 [Cucumis melo]6.9e-8493.6Show/hide
Query:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA
        MSATLLSYCNPSLACNY RMD KRMA  HLRSIGRRNNG+RKLTVFAVTEGSAKSSESEETIPSWAK DSEEPPPWA+EE KE GTQQGFQVPFYVYLLA
Subjt:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA

Query:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL
        SSITAIAAIGSVFEYVNQKPVFGIINSDS+LYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDR+DGYL
Subjt:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL
XP_023544716.1 uncharacterized protein LOC111804219 [Cucurbita pepo subsp. pepo]3.4e-8392.4Show/hide
Query:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA
        MSATLLSY NPSLACNYG+MD+KR+AF  LRSIGRRNNG+R LTVFA TEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQG+QVPFYVYLLA
Subjt:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA

Query:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGY
        SSITAIAAIGSVFEYVNQKPVFGIINSDS+ YAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDR+DGY
Subjt:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGY
XP_038881100.1 uncharacterized protein LOC120072709 isoform X2 [Benincasa hispida]2.7e-8897.09Show/hide
Query:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA
        MSATLLSYCNPSLACNYGRMDSK MAF HLRSIG RNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA
Subjt:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA

Query:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL
        SSITAIAAIGSVFEYVNQKPVFGIINSDS+LYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDR+DGYL
Subjt:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL
TrEMBL top hitse value%identityAlignment
A0A0A0KIJ8 Uncharacterized protein2.3e-8594.19Show/hide
Query:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA
        MSATLLSYCNPSL CNYGRMD KRMA  HLRS GRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAK DSEEPPPWA+EEGKEIGTQQGFQVPFYVYLLA
Subjt:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA

Query:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL
        SSITAIAAIGSVFEYVNQKPVFGIINSDS+LYAPLLGFFA TGIPTAAFLWFKSVEVANKEAEDQDR+DGYL
Subjt:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL
A0A1S4DTF9 uncharacterized protein LOC1034842543.3e-8493.6Show/hide
Query:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA
        MSATLLSYCNPSLACNY RMD KRMA  HLRSIGRRNNG+RKLTVFAVTEGSAKSSESEETIPSWAK DSEEPPPWA+EE KE GTQQGFQVPFYVYLLA
Subjt:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA

Query:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL
        SSITAIAAIGSVFEYVNQKPVFGIINSDS+LYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDR+DGYL
Subjt:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL
A0A5A7UB84 Uncharacterized protein3.3e-8493.6Show/hide
Query:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA
        MSATLLSYCNPSLACNY RMD KRMA  HLRSIGRRNNG+RKLTVFAVTEGSAKSSESEETIPSWAK DSEEPPPWA+EE KE GTQQGFQVPFYVYLLA
Subjt:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA

Query:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL
        SSITAIAAIGSVFEYVNQKPVFGIINSDS+LYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDR+DGYL
Subjt:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL
A0A6J1EDF6 uncharacterized protein LOC1114333012.8e-8392.4Show/hide
Query:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA
        MSATLLSY NPSLACNYG+MD+KR+AF  LRSIGRRNNG+R LTVFA TEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGT QGFQVPFYVYLLA
Subjt:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA

Query:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGY
        SSITAIAAIGSVFEYVNQKPVFGIINSDS+ YAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDR+DGY
Subjt:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGY
A0A6J1IIG9 uncharacterized protein LOC1114777932.2e-8392.4Show/hide
Query:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA
        MSATLLSY NPSLACNYG+MD++R+AF  LRSIGRRNNG+R LTVFA TEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA
Subjt:  MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLA

Query:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGY
        SSITAIAAIGSVFEYVNQKPVFGIINSDS+ YAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDR+DGY
Subjt:  SSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G51510.1 unknown protein1.7e-4868.94Show/hide
Query:  RKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLASSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFA
        R+L V A TEGS KS ESE   PSWA PDS+EPPPWAR EG+   +Q+ F+VPF+VYLLAS+ITAIAAIGSVFEY ++ PVFGI+ SDS+ Y P+LGFFA
Subjt:  RKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLASSITAIAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFA

Query:  FTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL
         TGIPT+ FLWFKSVE ANKEA++QD++DG+L
Subjt:  FTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCGACGCTGTTGTCTTATTGCAATCCAAGTCTAGCTTGTAATTATGGGAGAATGGATTCGAAACGCATGGCTTTCGAACATTTACGGTCTATTGGAAGG
AGAAACAATGGCTATCGCAAGCTTACCGTGTTTGCCGTTACAGAAGGGTCTGCGAAATCGAGCGAGTCTGAAGAAACAATTCCTTCTTGGGCCAAACCTGATTCG
GAGGAGCCTCCTCCTTGGGCAAGGGAAGAAGGCAAGGAAATTGGAACCCAACAGGGATTTCAGGTCCCTTTTTATGTTTACTTGCTCGCCTCATCTATCACTGCA
ATTGCTGCTATAGGTTCCGTATTTGAGTACGTCAACCAGAAGCCTGTCTTTGGAATTATAAATTCAGACAGCGTATTGTACGCTCCATTGCTTGGATTTTTTGCA
TTTACTGGCATTCCCACTGCTGCATTCCTTTGGTTCAAATCTGTTGAAGTTGCTAATAAAGAAGCTGAGGATCAGGACAGAAAGGATGGTTACTTGTAG
mRNA sequenceShow/hide mRNA sequence
CGTCATTCGTTATCCTCAGTATCATTATCTCCCTCCAAACCCGACCGCTCGATCCAGTCCTCTCTCCCATCGCTGCCGGTAGTTTCAAGGAGGCCGGAAAAGCCT
TACGCTCGCAGGGGCTTCTCACCACACTCATCTCTCTACAGCAAAGTTCCTCCCGTACCACACCAGTACGTTCCCTCCACTCTCTTATCGCTCTTCTTCGACATT
TTACTGCGTTTGAAAGGAAAATGAAAGTACCAATTACTGCGGAGACAAGGATCAACAGTTGATATTAACTGCTGCTGTAATTGTGCCATTTCTGTTAGGTTTTTA
GCAGTGATATTACATGGGTTGAAAGAAGAATTGGGAGTAATGTCTGCGACGCTGTTGTCTTATTGCAATCCAAGTCTAGCTTGTAATTATGGGAGAATGGATTCG
AAACGCATGGCTTTCGAACATTTACGGTCTATTGGAAGGAGAAACAATGGCTATCGCAAGCTTACCGTGTTTGCCGTTACAGAAGGGTCTGCGAAATCGAGCGAG
TCTGAAGAAACAATTCCTTCTTGGGCCAAACCTGATTCGGAGGAGCCTCCTCCTTGGGCAAGGGAAGAAGGCAAGGAAATTGGAACCCAACAGGGATTTCAGGTC
CCTTTTTATGTTTACTTGCTCGCCTCATCTATCACTGCAATTGCTGCTATAGGTTCCGTATTTGAGTACGTCAACCAGAAGCCTGTCTTTGGAATTATAAATTCA
GACAGCGTATTGTACGCTCCATTGCTTGGATTTTTTGCATTTACTGGCATTCCCACTGCTGCATTCCTTTGGTTCAAATCTGTTGAAGTTGCTAATAAAGAAGCT
GAGGATCAGGACAGAAAGGATGGTTACTTGTAGAATATCTTTCTCTAACACAAATTTATTGTCCTTTGGAAGTAACTATGCTGGTTTTCCCCCCTACTTGTGTAC
TGTATATTCCCTATGAGCATGCTACAGTGTAATTGATGCTAACTAGGCAGCTATTGCTGTATCAGCATTTCAATTTCTATAAAAAGAATGTATCTTATATCTTGT
TTTTATTTAAATGATAGACTCGTTTCCTTGAGATGGATGAAAGTAAGAAACAAAGCAATGGAACACGAGCCCAAAACAAAAGAGAGCTCAAGAAAAAAA
Protein sequenceShow/hide protein sequence
MSATLLSYCNPSLACNYGRMDSKRMAFEHLRSIGRRNNGYRKLTVFAVTEGSAKSSESEETIPSWAKPDSEEPPPWAREEGKEIGTQQGFQVPFYVYLLASSITA
IAAIGSVFEYVNQKPVFGIINSDSVLYAPLLGFFAFTGIPTAAFLWFKSVEVANKEAEDQDRKDGYL