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Lsi01G001050 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G001050
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNI-like superfamily protein
Genome locationchr01:1095674..1100184
RNA-Seq ExpressionLsi01G001050
SyntenyLsi01G001050
Gene Ontology termsNA
InterPro domainsIPR032675 - Leucine-rich repeat domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052508.1 putative F-box/LRR-repeat protein 9 [Cucumis melo var. makuwa]9.1e-0851.52Show/hide
Query:  PSFEVIETKQTALEWATVASDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ
        P  + ++  Q       +  D+ A  I +TMPKLRHLQI GN L D G+QAILDGC DLESL+L Q
Subjt:  PSFEVIETKQTALEWATVASDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ

KAF4398468.1 hypothetical protein G4B88_025447 [Cannabis sativa]1.6e-0740.24Show/hide
Query:  KTIPLSDIVEQIIGTKMLDVNGNQLATTPFDSLPAHLLQIVVHVPPITGIAHIDDAPHERVLADLTPRRANVLSVDEDINGA
        K IP SDIV+++I +K+LDVN  +LA    +++  HL ++ + +  I  + HID +PHERV  D+ PR A+ L+   D + A
Subjt:  KTIPLSDIVEQIIGTKMLDVNGNQLATTPFDSLPAHLLQIVVHVPPITGIAHIDDAPHERVLADLTPRRANVLSVDEDINGA

XP_004134904.1 putative F-box/LRR-repeat protein 9 [Cucumis sativus]3.1e-0856.45Show/hide
Query:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQASHTSSLAIQQLLGSL
        D+ A  I +TMPKLRHLQI GN L D G+QAIL+GCPDLESL+L    H  +L  +  LG++
Subjt:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQASHTSSLAIQQLLGSL

XP_008439579.1 PREDICTED: putative F-box/LRR-repeat protein 9 [Cucumis melo]9.1e-0851.52Show/hide
Query:  PSFEVIETKQTALEWATVASDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ
        P  + ++  Q       +  D+ A  I +TMPKLRHLQI GN L D G+QAILDGC DLESL+L Q
Subjt:  PSFEVIETKQTALEWATVASDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ

XP_038883506.1 F-box protein SKIP19-like [Benincasa hispida]4.4e-1067.31Show/hide
Query:  VASDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQASH
        + ++K A  I ETMPKLRHLQI GNGL + G+QAILDGCPDLESL+L Q  H
Subjt:  VASDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQASH

TrEMBL top hitse value%identityAlignment
A0A0A0KM43 F-box domain-containing protein1.5e-0856.45Show/hide
Query:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQASHTSSLAIQQLLGSL
        D+ A  I +TMPKLRHLQI GN L D G+QAIL+GCPDLESL+L    H  +L  +  LG++
Subjt:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQASHTSSLAIQQLLGSL

A0A1S3AZR6 putative F-box/LRR-repeat protein 94.4e-0851.52Show/hide
Query:  PSFEVIETKQTALEWATVASDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ
        P  + ++  Q       +  D+ A  I +TMPKLRHLQI GN L D G+QAILDGC DLESL+L Q
Subjt:  PSFEVIETKQTALEWATVASDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ

A0A5A7UBE1 Putative F-box/LRR-repeat protein 94.4e-0851.52Show/hide
Query:  PSFEVIETKQTALEWATVASDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ
        P  + ++  Q       +  D+ A  I +TMPKLRHLQI GN L D G+QAILDGC DLESL+L Q
Subjt:  PSFEVIETKQTALEWATVASDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ

A0A7J6EXA7 Uncharacterized protein7.5e-0840.24Show/hide
Query:  KTIPLSDIVEQIIGTKMLDVNGNQLATTPFDSLPAHLLQIVVHVPPITGIAHIDDAPHERVLADLTPRRANVLSVDEDINGA
        K IP SDIV+++I +K+LDVN  +LA    +++  HL ++ + +  I  + HID +PHERV  D+ PR A+ L+   D + A
Subjt:  KTIPLSDIVEQIIGTKMLDVNGNQLATTPFDSLPAHLLQIVVHVPPITGIAHIDDAPHERVLADLTPRRANVLSVDEDINGA

A0A7J6HUR1 Uncharacterized protein7.5e-0840.24Show/hide
Query:  KTIPLSDIVEQIIGTKMLDVNGNQLATTPFDSLPAHLLQIVVHVPPITGIAHIDDAPHERVLADLTPRRANVLSVDEDINGA
        K IP SDIV+++I +K+LDVN  +LA    +++  HL ++ + +  I  + HID +PHERV  D+ PR A+ L+   D + A
Subjt:  KTIPLSDIVEQIIGTKMLDVNGNQLATTPFDSLPAHLLQIVVHVPPITGIAHIDDAPHERVLADLTPRRANVLSVDEDINGA

SwissProt top hitse value%identityAlignment
Q9M0U6 Putative F-box/LRR-repeat protein 223.6e-0757.45Show/hide
Query:  SDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ
        SD  A  I +TMP L HLQ+  NGL + G+ AILDGCP LE L+L Q
Subjt:  SDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ

Q9M0U7 Putative F-box protein At4g054751.2e-0736.19Show/hide
Query:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLES-LNLCQASHTSSLAIQQLLGSLDQLPLAETQQNKKTLRRSKIVKRKFNKTIPLSDIVEQ
        D  A  I E+MPKLRHLQ+ GNGL ++G+ AILDGCP LE  L++ +  + +      L+G+L++       +  K LRR       +  +I +S +V+ 
Subjt:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLES-LNLCQASHTSSLAIQQLLGSLDQLPLAETQQNKKTLRRSKIVKRKFNKTIPLSDIVEQ

Query:  IIGTK
        +I ++
Subjt:  IIGTK

Q9M0U9 F-box protein SKIP197.7e-1064.44Show/hide
Query:  SDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNL
        +D  A  I ETMPKLRHLQ+CGNGL D+G+ AILD C +LE L+L
Subjt:  SDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNL

Q9S9V8 Putative F-box/LRR-repeat protein 91.6e-0758.7Show/hide
Query:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ
        DK A  I ETMP LRHLQ+  NGL ++G+ AIL+GCP L++L L Q
Subjt:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ

Q9S9V9 Putative F-box/LRR-repeat protein 231.9e-0860.87Show/hide
Query:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ
        D  A  I E+MP+LRHLQ+ GNGL + G+ AILDGCP LE L+L Q
Subjt:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ

Arabidopsis top hitse value%identityAlignment
AT4G05460.1 RNI-like superfamily protein5.5e-1164.44Show/hide
Query:  SDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNL
        +D  A  I ETMPKLRHLQ+CGNGL D+G+ AILD C +LE L+L
Subjt:  SDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNL

AT4G05475.1 RNI-like superfamily protein8.8e-0936.19Show/hide
Query:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLES-LNLCQASHTSSLAIQQLLGSLDQLPLAETQQNKKTLRRSKIVKRKFNKTIPLSDIVEQ
        D  A  I E+MPKLRHLQ+ GNGL ++G+ AILDGCP LE  L++ +  + +      L+G+L++       +  K LRR       +  +I +S +V+ 
Subjt:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLES-LNLCQASHTSSLAIQQLLGSLDQLPLAETQQNKKTLRRSKIVKRKFNKTIPLSDIVEQ

Query:  IIGTK
        +I ++
Subjt:  IIGTK

AT4G05497.1 RNI-like superfamily protein1.1e-0858.7Show/hide
Query:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ
        DK A  I ETMP LRHLQ+  NGL ++G+ AIL+GCP L++L L Q
Subjt:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ

AT5G52480.1 RNI-like superfamily protein2.7e-1063.04Show/hide
Query:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ
        D  A  I E+MPKLRHLQ+CGN L  +G+ AILDGCP LE L+L Q
Subjt:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ

AT5G52480.2 RNI-like superfamily protein2.7e-1063.04Show/hide
Query:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ
        D  A  I E+MPKLRHLQ+CGN L  +G+ AILDGCP LE L+L Q
Subjt:  DKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACTGTTGCCCTCTTTTGAAGTCATTGAAACTAAGCAAACGGCTTTGGAATGGGCAACAGTGGCAAGTGACAAGCGAGCCTTTACTATTGTTGAAACTATGCCAAA
GTTACGTCACCTTCAGATATGTGGCAATGGCCTAATTGACAGTGGAGTACAAGCTATTCTTGATGGATGTCCTGATTTAGAATCTCTCAACTTATGCCAAGCCTCTCATA
CTTCTTCTCTTGCAATTCAACAGTTGCTAGGCTCCTTGGACCAACTACCATTGGCAGAGACGCAGCAAAACAAGAAGACCTTACGAAGATCCAAGATAGTGAAACGAAAA
TTTAACAAGACGATACCTCTGAGTGATATAGTGGAGCAAATCATCGGTACCAAAATGCTCGATGTTAATGGAAATCAATTGGCCACAACTCCGTTCGACAGCCTGCCTGC
ACATCTCCTCCAAATCGTAGTCCATGTCCCACCGATCACCGGAATAGCGCATATCGATGACGCGCCACATGAGAGGGTCCTCGCAGATCTTACGCCACGAAGAGCAAACG
TCTTGAGCGTTGATGAGGATATCAATGGGGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAACTGTTGCCCTCTTTTGAAGTCATTGAAACTAAGCAAACGGCTTTGGAATGGGCAACAGTGGCAAGTGACAAGCGAGCCTTTACTATTGTTGAAACTATGCCAAA
GTTACGTCACCTTCAGATATGTGGCAATGGCCTAATTGACAGTGGAGTACAAGCTATTCTTGATGGATGTCCTGATTTAGAATCTCTCAACTTATGCCAAGCCTCTCATA
CTTCTTCTCTTGCAATTCAACAGTTGCTAGGCTCCTTGGACCAACTACCATTGGCAGAGACGCAGCAAAACAAGAAGACCTTACGAAGATCCAAGATAGTGAAACGAAAA
TTTAACAAGACGATACCTCTGAGTGATATAGTGGAGCAAATCATCGGTACCAAAATGCTCGATGTTAATGGAAATCAATTGGCCACAACTCCGTTCGACAGCCTGCCTGC
ACATCTCCTCCAAATCGTAGTCCATGTCCCACCGATCACCGGAATAGCGCATATCGATGACGCGCCACATGAGAGGGTCCTCGCAGATCTTACGCCACGAAGAGCAAACG
TCTTGAGCGTTGATGAGGATATCAATGGGGCCTAA
Protein sequenceShow/hide protein sequence
MELLPSFEVIETKQTALEWATVASDKRAFTIVETMPKLRHLQICGNGLIDSGVQAILDGCPDLESLNLCQASHTSSLAIQQLLGSLDQLPLAETQQNKKTLRRSKIVKRK
FNKTIPLSDIVEQIIGTKMLDVNGNQLATTPFDSLPAHLLQIVVHVPPITGIAHIDDAPHERVLADLTPRRANVLSVDEDINGA