; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G001080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G001080
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box protein SKIP19-like
Genome locationchr01:1130553..1131654
RNA-Seq ExpressionLsi01G001080
SyntenyLsi01G001080
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR032675 - Leucine-rich repeat domain superfamily
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7034751.1 Protein BREAST CANCER SUSCEPTIBILITY 1-like protein [Cucurbita argyrosperma subsp. argyrosperma]4.6e-3356.85Show/hide
Query:  MESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIICGQSVD--------INIEYFR
        MES S       +A N LELPA+ TSMILLK G ++IL++AQ+VCSSWRKIC++PLMW V+DM  SG   +M + LE +C Q+VD        INIE+F 
Subjt:  MESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIICGQSVD--------INIEYFR

Query:  TDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
        TD+LL YIT SS QLR+ R+ +C  ISDE L +AVS LPLLE LEI
Subjt:  TDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

XP_015878944.1 F-box protein SKIP19 [Ziziphus jujuba]1.6e-3356.94Show/hide
Query:  STSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMG--------HRLEIICGQSVDINIEYFRTD
        S S +QQ E +  N LELP + TS IL + GAIEIL+SAQNVCSSWR ICK+PLMW  IDM N G ++ M         H +++ CGQ VDINIE+F TD
Subjt:  STSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMG--------HRLEIICGQSVDINIEYFRTD

Query:  ELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
        ELL Y+T+ S  +RR R+  CY ISD  LSEA + LPLLE LEI
Subjt:  ELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

XP_022146498.1 F-box protein SKIP19-like isoform X2 [Momordica charantia]7.6e-3664.66Show/hide
Query:  ASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIIC--------GQSVDINIEYFRTDELLLYITNSSK
        A N LELPA   S I+LK GAIEIL+SAQ VCSSW KICK+P MW VIDMHN G  H+M + LEI+C        GQ  DINIEYF TD+LL YIT S+ 
Subjt:  ASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIIC--------GQSVDINIEYFRTDELLLYITNSSK

Query:  QLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
        QLRR RIA CY ISD+ L++AV  LPLLEHLEI
Subjt:  QLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

XP_022146630.1 F-box protein SKIP19-like [Momordica charantia]1.2e-3664.93Show/hide
Query:  QASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEII--------CGQSVDINIEYFRTDELLLYITNSS
        +A N LELPA+ TSMILLK GAIEILSSAQ+VCS WRKICK+PLMW V+DMHN  G  +M + LE +        CG+ +DINI+YF T+ELL YIT SS
Subjt:  QASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEII--------CGQSVDINIEYFRTDELLLYITNSS

Query:  KQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
         QLRR RI  C+ I+D  LSEAVS LPLLEHLEI
Subjt:  KQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

XP_038883506.1 F-box protein SKIP19-like [Benincasa hispida]9.0e-4569.86Show/hide
Query:  MESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEII--------CGQSVDINIEYFR
        MES S+I QSEA+A N L+LPA   SMILLK GAIEIL+SAQNVCSSWRKICK+PLMW VIDM NSG  ++M H LEI+        CGQ +DINIEYF 
Subjt:  MESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEII--------CGQSVDINIEYFR

Query:  TDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
        TDELL YIT SS QLRR R+A CY ISDE L+EA+S LPLLEHLEI
Subjt:  TDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

TrEMBL top hitse value%identityAlignment
A0A6J1CXS5 F-box protein SKIP19-like5.7e-3764.93Show/hide
Query:  QASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEII--------CGQSVDINIEYFRTDELLLYITNSS
        +A N LELPA+ TSMILLK GAIEILSSAQ+VCS WRKICK+PLMW V+DMHN  G  +M + LE +        CG+ +DINI+YF T+ELL YIT SS
Subjt:  QASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEII--------CGQSVDINIEYFRTDELLLYITNSS

Query:  KQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
         QLRR RI  C+ I+D  LSEAVS LPLLEHLEI
Subjt:  KQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

A0A6J1CYR2 F-box protein SKIP19-like isoform X23.7e-3664.66Show/hide
Query:  ASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIIC--------GQSVDINIEYFRTDELLLYITNSSK
        A N LELPA   S I+LK GAIEIL+SAQ VCSSW KICK+P MW VIDMHN G  H+M + LEI+C        GQ  DINIEYF TD+LL YIT S+ 
Subjt:  ASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIIC--------GQSVDINIEYFRTDELLLYITNSSK

Query:  QLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
        QLRR RIA CY ISD+ L++AV  LPLLEHLEI
Subjt:  QLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

A0A6J1EGI8 F-box protein SKIP19-like isoform X21.9e-3256.16Show/hide
Query:  MESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIICGQSVD--------INIEYFR
        MES S       +A N LELPA+ TSMILLK G ++IL++AQ+VCSSWRKIC++PLMW V+DM  SG   +M + LE +C Q+VD        I IE+F 
Subjt:  MESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIICGQSVD--------INIEYFR

Query:  TDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
        TD+LL YIT SS QLR  R+ +C  ISDE L +AVS LPLLE LEI
Subjt:  TDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

A0A6J1ILH5 F-box protein SKIP19-like6.5e-3356.16Show/hide
Query:  MESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIICGQSVD--------INIEYFR
        MES S       +A N LELPA+ TSMILLK G ++IL++AQ+VCSSWRKIC++PLMW V+DM  SG   +M + LE +C Q+VD        INIE+F 
Subjt:  MESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIICGQSVD--------INIEYFR

Query:  TDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
        TD+LL YIT SS QLR+ R+ +C  ISDE   +AVS LPLLE LEI
Subjt:  TDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

A0A6P3ZH66 F-box protein SKIP197.7e-3456.94Show/hide
Query:  STSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMG--------HRLEIICGQSVDINIEYFRTD
        S S +QQ E +  N LELP + TS IL + GAIEIL+SAQNVCSSWR ICK+PLMW  IDM N G ++ M         H +++ CGQ VDINIE+F TD
Subjt:  STSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMG--------HRLEIICGQSVDINIEYFRTD

Query:  ELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
        ELL Y+T+ S  +RR R+  CY ISD  LSEA + LPLLE LEI
Subjt:  ELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

SwissProt top hitse value%identityAlignment
Q9M0U6 Putative F-box/LRR-repeat protein 223.5e-1536.77Show/hide
Query:  SNHNPMESTSM--IQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIICGQSVDI-------
        S+ +P  +TS   + + E + SN  ELP +  S ILL+   +EIL +A+ VC SWR++ K+PL+W  IDM N    + + + +E  C   VD+       
Subjt:  SNHNPMESTSM--IQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIICGQSVDI-------

Query:  -NIEY--FRTDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
         NI+   F+T  LL Y+   S  LRR R+     I+   + EA+  LPLLE LE+
Subjt:  -NIEY--FRTDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

Q9M0U7 Putative F-box protein At4g054751.7e-1431.29Show/hide
Query:  NHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVID-----MHNSGGSHNMGHRLEIICGQSVDINIEYF
        N     ST  +++ + +  N ++LP   T+ ILL+    +IL +A+ +C +WR+ICK+P MW  I+     M+         H +++  G  ++INIE+F
Subjt:  NHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVID-----MHNSGGSHNMGHRLEIICGQSVDINIEYF

Query:  RTDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
         +D LL YI + S  L+   I+    ++++ +   +  LPLLE L I
Subjt:  RTDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

Q9M0U9 F-box protein SKIP192.2e-2548.51Show/hide
Query:  QASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIIC--------GQSVDINIEYFRTDELLLYITNSS
        +++N  ELP   TS IL + GAIEIL +AQ VC SWR++CK+P MW  IDMHN G   +M + LEI+C        G  VDI I YF T +LL YI + S
Subjt:  QASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIIC--------GQSVDINIEYFRTDELLLYITNSS

Query:  KQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
          LR  R+  C  I+D+   EAV  LP LE LE+
Subjt:  KQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

Q9S9V8 Putative F-box/LRR-repeat protein 93.0e-1941.04Show/hide
Query:  NCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDM---HNSGGSHNMGHRLEIICGQSVD--------INIEYFRTDELLLYITNSS
        N  ELP   TS ILL+ GAIEIL +AQ VC SWR++C++P MW  ID+    N   S  + + +E +C ++VD        INI+Y      L YI + S
Subjt:  NCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDM---HNSGGSHNMGHRLEIICGQSVD--------INIEYFRTDELLLYITNSS

Query:  KQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
          LRR  +  C  +    + EA   LPLLE L+I
Subjt:  KQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

Q9S9V9 Putative F-box/LRR-repeat protein 231.5e-2341.98Show/hide
Query:  NCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIICGQSVD--------INIEYFRTDELLLYITNSSKQL
        N  ELP+  TS ILL+ GAIEIL +AQ VC  W ++CK+P MW  ID+ N        + LE +C  +VD        I I Y+ T++L++YI + S  L
Subjt:  NCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIICGQSVD--------INIEYFRTDELLLYITNSSKQL

Query:  RRPRIAHCYGISDERLSEAVSNLPLLEHLEI
        +   +  C+ I+DE +++AVS +PLLE+LE+
Subjt:  RRPRIAHCYGISDERLSEAVSNLPLLEHLEI

Arabidopsis top hitse value%identityAlignment
AT4G05460.1 RNI-like superfamily protein1.5e-2648.51Show/hide
Query:  QASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIIC--------GQSVDINIEYFRTDELLLYITNSS
        +++N  ELP   TS IL + GAIEIL +AQ VC SWR++CK+P MW  IDMHN G   +M + LEI+C        G  VDI I YF T +LL YI + S
Subjt:  QASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIIC--------GQSVDINIEYFRTDELLLYITNSS

Query:  KQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
          LR  R+  C  I+D+   EAV  LP LE LE+
Subjt:  KQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

AT4G05470.1 RNI-like superfamily protein1.3e-1432.89Show/hide
Query:  NHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVID-----MHNSGGSHNMGHRLEIICGQSVDINI-EY
        N     ST++      +  N ++LP   T+ ILL+    +IL +AQ VC  WR+ICK+P MW  I+     M+N        H +++  G  ++IN+ E+
Subjt:  NHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVID-----MHNSGGSHNMGHRLEIICGQSVDINI-EY

Query:  FRTDELLLYITNSSKQLRRPRIAHCY-GISDERLSEAVSNLPLLEHLEI
        F +D LL YIT+  + LR   +  C+  ++   +  A++ +PLLE LE+
Subjt:  FRTDELLLYITNSSKQLRRPRIAHCY-GISDERLSEAVSNLPLLEHLEI

AT4G05475.1 RNI-like superfamily protein1.2e-1531.29Show/hide
Query:  NHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVID-----MHNSGGSHNMGHRLEIICGQSVDINIEYF
        N     ST  +++ + +  N ++LP   T+ ILL+    +IL +A+ +C +WR+ICK+P MW  I+     M+         H +++  G  ++INIE+F
Subjt:  NHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVID-----MHNSGGSHNMGHRLEIICGQSVDINIEYF

Query:  RTDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
         +D LL YI + S  L+   I+    ++++ +   +  LPLLE L I
Subjt:  RTDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

AT4G05490.1 RNI-like superfamily protein2.5e-1636.77Show/hide
Query:  SNHNPMESTSM--IQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIICGQSVDI-------
        S+ +P  +TS   + + E + SN  ELP +  S ILL+   +EIL +A+ VC SWR++ K+PL+W  IDM N    + + + +E  C   VD+       
Subjt:  SNHNPMESTSM--IQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIICGQSVDI-------

Query:  -NIEY--FRTDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
         NI+   F+T  LL Y+   S  LRR R+     I+   + EA+  LPLLE LE+
Subjt:  -NIEY--FRTDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

AT4G05497.1 RNI-like superfamily protein2.1e-2041.04Show/hide
Query:  NCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDM---HNSGGSHNMGHRLEIICGQSVD--------INIEYFRTDELLLYITNSS
        N  ELP   TS ILL+ GAIEIL +AQ VC SWR++C++P MW  ID+    N   S  + + +E +C ++VD        INI+Y      L YI + S
Subjt:  NCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDM---HNSGGSHNMGHRLEIICGQSVD--------INIEYFRTDELLLYITNSS

Query:  KQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI
          LRR  +  C  +    + EA   LPLLE L+I
Subjt:  KQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCAATCATAATCCCATGGAATCGACCTCCATGATTCAGCAGTCGGAAGCGCAAGCGAGTAACTGCCTTGAACTGCCTGCAAATTTCACGTCTATGATTCTCCTGAAGCC
AGGCGCCATTGAAATCCTCTCCAGCGCTCAAAATGTCTGCTCTTCCTGGCGCAAGATCTGCAAGAATCCTCTCATGTGGTGTGTCATCGATATGCACAATTCGGGTGGTT
CGCATAATATGGGTCACCGTTTGGAGATAATTTGTGGCCAATCGGTCGATATCAACATTGAATACTTTCGCACTGATGAATTGCTCCTATACATCACGAATAGTTCAAAA
CAACTTAGAAGACCCCGGATTGCACACTGCTATGGTATTTCAGACGAGAGATTGTCTGAAGCAGTTTCAAACCTTCCATTGTTGGAGCATCTTGAAATATGA
mRNA sequenceShow/hide mRNA sequence
TCCAATCATAATCCCATGGAATCGACCTCCATGATTCAGCAGTCGGAAGCGCAAGCGAGTAACTGCCTTGAACTGCCTGCAAATTTCACGTCTATGATTCTCCTGAAGCC
AGGCGCCATTGAAATCCTCTCCAGCGCTCAAAATGTCTGCTCTTCCTGGCGCAAGATCTGCAAGAATCCTCTCATGTGGTGTGTCATCGATATGCACAATTCGGGTGGTT
CGCATAATATGGGTCACCGTTTGGAGATAATTTGTGGCCAATCGGTCGATATCAACATTGAATACTTTCGCACTGATGAATTGCTCCTATACATCACGAATAGTTCAAAA
CAACTTAGAAGACCCCGGATTGCACACTGCTATGGTATTTCAGACGAGAGATTGTCTGAAGCAGTTTCAAACCTTCCATTGTTGGAGCATCTTGAAATATGAATGCATTT
ATTTTTTGTGAAAACTTTGAAAGCTGTTGGACAGTGTTGCCGTTTTCTGAAATATCTGATACTGAACGGAAAGTTTAATCGAGGGAAAGGTTTTGACAACGAGGCCCTTG
CTGTTCCTGAAAGAACGCAAGTGTTTTTTACCGTTCAAATATTGGGCAATGTCCTAACTAACACAGGCTTGCAGGGCATTCCTGATGGTTGTCCTGATTTAGGAACTCTT
GATTTACGCCATTGTTTCAATTTACATTTGACGGGGCAGTTGAG
Protein sequenceShow/hide protein sequence
SNHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIICGQSVDINIEYFRTDELLLYITNSSK
QLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI