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Lsi01G001310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G001310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionE3 ubiquitin-protein ligase arkadia-A, putative
Genome locationchr01:1356015..1356386
RNA-Seq ExpressionLsi01G001310
SyntenyLsi01G001310
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052530.1 putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa]3.0e-5795.93Show/hide
Query:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL
        MED HKLQNIPSFKLSRYSSSARDSD GDDLRYTSLKDILLNSPSYSGVN+FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNES FVGFWERLRIKL
Subjt:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL

Query:  AALRSRWCDYFHRIFGFFSFALD
        AALRSRWCD FHRIFGFFSFALD
Subjt:  AALRSRWCDYFHRIFGFFSFALD
KAG7034735.1 hypothetical protein SDJN02_04465, partial [Cucurbita argyrosperma subsp. argyrosperma]5.9e-5390Show/hide
Query:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL
        M+DPHKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVNEFNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVGFWERLRIKL
Subjt:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL

Query:  AALRSRWCDYFHRIFGFFSF
        AALRSRWCD F R FGFF F
Subjt:  AALRSRWCDYFHRIFGFFSF
XP_022925985.1 uncharacterized protein LOC111433238 [Cucurbita moschata]5.9e-5390Show/hide
Query:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL
        M+DPHKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVNEFNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVGFWERLRIKL
Subjt:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL

Query:  AALRSRWCDYFHRIFGFFSF
        AALRSRWCD F R FGFF F
Subjt:  AALRSRWCDYFHRIFGFFSF
XP_022977989.1 uncharacterized protein LOC111478115 [Cucurbita maxima]1.6e-5390.08Show/hide
Query:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL
        M+DPHKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVNEFNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVGFWERLRIKL
Subjt:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL

Query:  AALRSRWCDYFHRIFGFFSFA
        AALRSRWCD F R FGFF FA
Subjt:  AALRSRWCDYFHRIFGFFSFA
XP_023544918.1 uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo]1.6e-5390.08Show/hide
Query:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL
        M+DPHKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVNEFNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVGFWERLRIKL
Subjt:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL

Query:  AALRSRWCDYFHRIFGFFSFA
        AALRSRWCD F R FGFF FA
Subjt:  AALRSRWCDYFHRIFGFFSFA
TrEMBL top hitse value%identityAlignment
A0A0A0KKP9 Uncharacterized protein1.9e-5795.12Show/hide
Query:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL
        MEDPH+LQNIPSFKLSRYSSSARDSD  DDLRYTSLKDILLNSPSYSGVN+FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNES FVGFWERLRIKL
Subjt:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL

Query:  AALRSRWCDYFHRIFGFFSFALD
        AALRSRWCD FHRIFGFFSFALD
Subjt:  AALRSRWCDYFHRIFGFFSFALD
A0A5A7UBK0 Putative E3 ubiquitin-protein ligase arkadia-A1.5e-5795.93Show/hide
Query:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL
        MED HKLQNIPSFKLSRYSSSARDSD GDDLRYTSLKDILLNSPSYSGVN+FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNES FVGFWERLRIKL
Subjt:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL

Query:  AALRSRWCDYFHRIFGFFSFALD
        AALRSRWCD FHRIFGFFSFALD
Subjt:  AALRSRWCDYFHRIFGFFSFALD
A0A6J1CYB8 uncharacterized protein LOC1110157127.0e-4489.62Show/hide
Query:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL
        + + HKLQNIPSFKLSRYSS ARDSD GDDLRY SLKDILLNSPSYSGVN+FN+FNSSNISIRNELVKRAASAYLQSAAILVSRNESCFV FWERLR KL
Subjt:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL

Query:  AALRSR
        AALRSR
Subjt:  AALRSR
A0A6J1EJR7 uncharacterized protein LOC1114332382.9e-5390Show/hide
Query:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL
        M+DPHKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVNEFNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVGFWERLRIKL
Subjt:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL

Query:  AALRSRWCDYFHRIFGFFSF
        AALRSRWCD F R FGFF F
Subjt:  AALRSRWCDYFHRIFGFFSF
A0A6J1ISV4 uncharacterized protein LOC1114781157.5e-5490.08Show/hide
Query:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL
        M+DPHKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVNEFNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVGFWERLRIKL
Subjt:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL

Query:  AALRSRWCDYFHRIFGFFSFA
        AALRSRWCD F R FGFF FA
Subjt:  AALRSRWCDYFHRIFGFFSFA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G18395.1 unknown protein2.3e-0740.24Show/hide
Query:  DSDPGDDLRYTSLKDILLNS---------PSYSGVNE----FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGF
        D +  ++L+YTSLKD++ +S         P YS  ++     +E +SSNI+I NELVKRAAS Y+QS+ I+++ + + F  F
Subjt:  DSDPGDDLRYTSLKDILLNS---------PSYSGVNE----FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGF
AT5G06280.1 unknown protein1.9e-0438.1Show/hide
Query:  PGDDLRYTSLKDIL-------LNSPSYSG-VNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKLAA
        P   + YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ   +L S ++S    F+ R+ + L+A
Subjt:  PGDDLRYTSLKDIL-------LNSPSYSG-VNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKLAA
AT5G06280.3 unknown protein1.9e-0438.1Show/hide
Query:  PGDDLRYTSLKDIL-------LNSPSYSG-VNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKLAA
        P   + YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ   +L S ++S    F+ R+ + L+A
Subjt:  PGDDLRYTSLKDIL-------LNSPSYSG-VNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKLAA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGACCCTCATAAGCTTCAGAACATACCTTCTTTCAAACTGTCCCGTTATTCCTCCAGCGCCCGAGATTCTGATCCCGGCGATGACCTCCGATACACTAGCTTGAA
GGACATTCTACTGAACTCGCCGTCGTACAGCGGCGTAAATGAGTTCAATGAGTTCAATTCGTCAAATATTTCGATCCGAAACGAGCTAGTGAAAAGAGCTGCGTCGGCGT
ATCTTCAATCGGCGGCGATTTTGGTCAGCCGGAATGAGAGCTGTTTCGTCGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCCCTCCGTTCCCGTTGGTGCGATTAT
TTTCACCGTATTTTTGGCTTCTTTAGTTTTGCCCTAGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGACCCTCATAAGCTTCAGAACATACCTTCTTTCAAACTGTCCCGTTATTCCTCCAGCGCCCGAGATTCTGATCCCGGCGATGACCTCCGATACACTAGCTTGAA
GGACATTCTACTGAACTCGCCGTCGTACAGCGGCGTAAATGAGTTCAATGAGTTCAATTCGTCAAATATTTCGATCCGAAACGAGCTAGTGAAAAGAGCTGCGTCGGCGT
ATCTTCAATCGGCGGCGATTTTGGTCAGCCGGAATGAGAGCTGTTTCGTCGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCCCTCCGTTCCCGTTGGTGCGATTAT
TTTCACCGTATTTTTGGCTTCTTTAGTTTTGCCCTAGACTAA
Protein sequenceShow/hide protein sequence
MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKLAALRSRWCDY
FHRIFGFFSFALD