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Lsi01G001610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G001610
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionhigh mobility group B protein 14
Genome locationchr01:1617871..1618450
RNA-Seq ExpressionLsi01G001610
SyntenyLsi01G001610
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022926030.1 high mobility group B protein 14 [Cucurbita moschata]3.5e-2881.32Show/hide
Query:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD
        MAKAKKPQKSP  +AH+SSE FEEASQEDTGLCVKRSEEMKR+AK  RFN   K  KT K+PKS QKKKNDKFDVNKPKKPPTAFFYFL D
Subjt:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD

XP_022978337.1 high mobility group B protein 14 [Cucurbita maxima]3.5e-2881.32Show/hide
Query:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD
        MAKAKKPQKSP  +AH+SSE FEEASQEDTGLCVKRSEEMKR+AK  RFN   K  KT K+PKS QKKKNDKFDVNKPKKPPTAFFYFL D
Subjt:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD

XP_023544425.1 high mobility group B protein 14 [Cucurbita pepo subsp. pepo]4.5e-2881.32Show/hide
Query:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD
        MAKAKKPQKSP  +AH+SSE FEEASQEDTGLCVKRSEEMKR+AKA RFN+  K  KT K+PKS QKKKNDK DVNKPKKPPTAFFYFL D
Subjt:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD

XP_038881049.1 high mobility group B protein 14 isoform X1 [Benincasa hispida]2.7e-3392.31Show/hide
Query:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD
        MAKAKKPQKSP ASAH+SSE FEEAS EDTGLCVKRSEEMKRAAKASRFNTDNKR KT KKPKSKQKKKNDKFDVNKPKKPPTAFFYFL D
Subjt:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD

XP_038881050.1 high mobility group B protein 14 isoform X2 [Benincasa hispida]2.7e-3392.31Show/hide
Query:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD
        MAKAKKPQKSP ASAH+SSE FEEAS EDTGLCVKRSEEMKRAAKASRFNTDNKR KT KKPKSKQKKKNDKFDVNKPKKPPTAFFYFL D
Subjt:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD

TrEMBL top hitse value%identityAlignment
A0A0A0KKL8 HMG box domain-containing protein5.2e-2279.12Show/hide
Query:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD
        MAKAK PQKS  ASA +SS    EAS E+TGL VKRSE MK AAKASRFNTD KR KT KKP SKQKKKNDKFDVNKPKKPPTAFFYFL D
Subjt:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD

A0A1S3AZW3 high mobility group B protein 145.6e-2480.22Show/hide
Query:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD
        MAKAK  QKSP ASAH+SS    EAS E TGL VKR +EMK AAKASRFNTDNKR KT KKPKSKQKKKND+FDVNKPKKPPTAFFYFL D
Subjt:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD

A0A6J1D022 high mobility group B protein 14 isoform X27.1e-1180.77Show/hide
Query:  MKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD
        MKR+A+ASRFN+D KR KT K+PKSK+KKKNDKFD NKPKKPPTAFFYFL D
Subjt:  MKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD

A0A6J1EJV4 high mobility group B protein 141.7e-2881.32Show/hide
Query:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD
        MAKAKKPQKSP  +AH+SSE FEEASQEDTGLCVKRSEEMKR+AK  RFN   K  KT K+PKS QKKKNDKFDVNKPKKPPTAFFYFL D
Subjt:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD

A0A6J1IKU3 high mobility group B protein 141.7e-2881.32Show/hide
Query:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD
        MAKAKKPQKSP  +AH+SSE FEEASQEDTGLCVKRSEEMKR+AK  RFN   K  KT K+PKS QKKKNDKFDVNKPKKPPTAFFYFL D
Subjt:  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGACCAAGGGGGAGAACAACGGCGCAGGGCAATGGCGAAAGCGAAAAAGCCCCAAAAATCACCTCCAGCTTCTGCGCACGAATCTTCCGAAACGTTTGAAGAAGC
GTCTCAAGAGGATACGGGATTATGTGTAAAAAGAAGCGAAGAGATGAAAAGGGCAGCAAAAGCTAGCAGATTTAACACGGATAATAAGAGAATGAAGACAACTAAGAAGC
CAAAATCAAAGCAGAAGAAGAAAAATGATAAATTTGATGTCAATAAGCCAAAGAAACCACCTACTGCTTTCTTTTACTTCTTGTATGATCCCTTCCCTTACTCTCATCTC
AATTAA
mRNA sequenceShow/hide mRNA sequence
TTTCAGATGTCTAAACATACCTAAAAATAATTAATAATAATTTAAAGAAGAAAAGAAAGAAAAAAAAACCGGTCCAAACTCGGCAACACCGAGTCAGGCCCGAGCGTCGC
CAATGGAAGACCAAGGGGGAGAACAACGGCGCAGGGCAATGGCGAAAGCGAAAAAGCCCCAAAAATCACCTCCAGCTTCTGCGCACGAATCTTCCGAAACGTTTGAAGAA
GCGTCTCAAGAGGATACGGGATTATGTGTAAAAAGAAGCGAAGAGATGAAAAGGGCAGCAAAAGCTAGCAGATTTAACACGGATAATAAGAGAATGAAGACAACTAAGAA
GCCAAAATCAAAGCAGAAGAAGAAAAATGATAAATTTGATGTCAATAAGCCAAAGAAACCACCTACTGCTTTCTTTTACTTCTTGTATGATCCCTTCCCTTACTCTCATC
TCAATTAA
Protein sequenceShow/hide protein sequence
MEDQGGEQRRRAMAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYDPFPYSHL
N