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Lsi01G001620 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G001620
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionhigh mobility group B protein 14
Genome locationchr01:1618724..1621720
RNA-Seq ExpressionLsi01G001620
SyntenyLsi01G001620
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR009071 - High mobility group box domain
IPR031061 - High mobility group protein HMGB, plant
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581419.1 High mobility group B protein 14, partial [Cucurbita argyrosperma subsp. sororia]2.1e-2587.32Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE
        +DDFRKEFQ QNPDVK+MRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRK   + +DQE
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE

XP_022146670.1 high mobility group B protein 14 isoform X1 [Momordica charantia]3.6e-2587.32Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE
        +DDFRKEFQ QNPDVK+MRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRK   + ID+E
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE

XP_022926030.1 high mobility group B protein 14 [Cucurbita moschata]2.1e-2587.32Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE
        +DDFRKEFQ QNPDVK+MRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRK   + +DQE
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE

XP_023544425.1 high mobility group B protein 14 [Cucurbita pepo subsp. pepo]2.1e-2587.32Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE
        +DDFRKEFQ QNPDVK+MRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRK   + +DQE
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE

XP_038881049.1 high mobility group B protein 14 isoform X1 [Benincasa hispida]2.1e-2587.32Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE
        +DDFRKEFQ QNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIAT+KRAEFDKAMAEYKKRK   + +DQE
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE

TrEMBL top hitse value%identityAlignment
A0A0A0KKL8 HMG box domain-containing protein3.0e-2587.32Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE
        +DDFRKEFQ QNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAM EYKKR    + IDQE
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE

A0A1S3AZW3 high mobility group B protein 146.7e-2595.08Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKR
        +DDFRKEFQ QNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAM EYKKR
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKR

A0A2P2JQ17 High mobility group B protein 142.5e-2480.28Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE
        ++DFRKEFQVQNPD+K+MRD+GKACGEKWKTMTYEEKV+YYDIATEKRAEFDKAMAEY KRK  S   + E
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE

A0A6J1CXW3 high mobility group B protein 14 isoform X11.8e-2587.32Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE
        +DDFRKEFQ QNPDVK+MRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRK   + ID+E
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE

A0A6J1EJV4 high mobility group B protein 141.0e-2587.32Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE
        +DDFRKEFQ QNPDVK+MRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRK   + +DQE
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE

SwissProt top hitse value%identityAlignment
O49595 High mobility group B protein 11.9e-0845Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKK
        ++DFR  F+ +NP+VK +  VGKA G+KWK+M+  EK  Y + A +++AE++K M  Y K
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKK

O49597 High mobility group B protein 58.4e-0946.55Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEY
        +DDFRKEF + NPD K++ +VG+A G+KWKTMT EE+  +   +  K+ E+   M +Y
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEY

O64702 High mobility group B protein 145.1e-2267.61Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE
        +DDFRK++Q +NPDVK+MR++GK CGEKWKTMTYEEKV+YYDIATEKR EF +AM EY KR    A  + E
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE

P40620 HMG1/2-like protein4.2e-0840.98Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKR
        M DFR++++  +P+ K++  VGKACGE+WK+++ EEK  Y D A +K+ E++  +  Y K+
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKR

P40621 HMG1/2-like protein2.1e-0740.91Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSA
        M +FR+EF+ +NP  K++  VGKA GE+WK+++  EK  Y   A + + E++KA+A Y K +  +A
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSA

Arabidopsis top hitse value%identityAlignment
AT2G34450.1 HMG-box (high mobility group) DNA-binding family protein3.6e-2367.61Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE
        +DDFRK++Q +NPDVK+MR++GK CGEKWKTMTYEEKV+YYDIATEKR EF +AM EY KR    A  + E
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE

AT2G34450.2 HMG-box (high mobility group) DNA-binding family protein6.8e-2268.06Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDV-GKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE
        +DDFRK++Q +NPDVK+MR+V GK CGEKWKTMTYEEKV+YYDIATEKR EF +AM EY KR    A  + E
Subjt:  MDDFRKEFQVQNPDVKTMRDV-GKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQE

AT3G51880.1 high mobility group B11.3e-0945Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKK
        ++DFR  F+ +NP+VK +  VGKA G+KWK+M+  EK  Y + A +++AE++K M  Y K
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKK

AT3G51880.2 high mobility group B11.3e-0945Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKK
        ++DFR  F+ +NP+VK +  VGKA G+KWK+M+  EK  Y + A +++AE++K M  Y K
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKK

AT4G35570.1 high mobility group B56.0e-1046.55Show/hide
Query:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEY
        +DDFRKEF + NPD K++ +VG+A G+KWKTMT EE+  +   +  K+ E+   M +Y
Subjt:  MDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTGAGTGGTATGGACGACTTTCGCAAGGAATTTCAAGTACAGAATCCAGATGTCAAGACGATGCGTGATGTTGGCAAGGCATGTGGGGAGAAATGGAAAACAAT
GACGTATGAGGAAAAAGTACAATATTATGATATTGCCACAGAGAAACGTGCAGAGTTTGACAAAGCCATGGCAGAATATAAGAAGAGGAAGGTAAGATCTGCCTTGATTG
ATCAAGAGTGTTTCTCGACACGTTTGAATTCTTATCCTGCTCCAATACACGAAAATGCTGACTGCTCTGAAATATCGTCAACGTCGTCGGTTTTGAAGCACGTGGCGATA
AATGCA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTGAGTGGTATGGACGACTTTCGCAAGGAATTTCAAGTACAGAATCCAGATGTCAAGACGATGCGTGATGTTGGCAAGGCATGTGGGGAGAAATGGAAAACAAT
GACGTATGAGGAAAAAGTACAATATTATGATATTGCCACAGAGAAACGTGCAGAGTTTGACAAAGCCATGGCAGAATATAAGAAGAGGAAGGTAAGATCTGCCTTGATTG
ATCAAGAGTGTTTCTCGACACGTTTGAATTCTTATCCTGCTCCAATACACGAAAATGCTGACTGCTCTGAAATATCGTCAACGTCGTCGGTTTTGAAGCACGTGGCGATA
AATGCA
Protein sequenceShow/hide protein sequence
MELSGMDDFRKEFQVQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKVRSALIDQECFSTRLNSYPAPIHENADCSEISSTSSVLKHVAI
NA