; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G001710 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G001710
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionChlorophyll a-b binding proteinic
Genome locationchr01:1668099..1669300
RNA-Seq ExpressionLsi01G001710
SyntenyLsi01G001710
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009521 - photosystem (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2314663.1 hypothetical protein GH714_028341 [Hevea brasiliensis]2.3e-5959.9Show/hide
Query:  MSPSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQ
        +SP IVVD VS VV Q+LQW+LS +NGLNKES+HGEH Q +IL+LL+LQ S+  W++SQ QWV+ASTWVDWV DL EW  G++V L+G HQH L  PDGQ
Subjt:  MSPSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQ

Query:  NALCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQLT-----------SSSVPAVVTGELSGEVGW
        +ALC+DQAWV QVV+++LAEDL S LEP+ L +L ++A Q+L +D  + SKHGPS VDHF+LT           +SSVPA+VT EL+ +VGW
Subjt:  NALCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQLT-----------SSSVPAVVTGELSGEVGW

KAG5613833.1 hypothetical protein H5410_013657 [Solanum commersonii]5.4e-5362.73Show/hide
Query:  PSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQNA
        PS+VV+WVSKVVG++LQWTLSS++ LNKESKHGEH + +IL+ L L+ S+ LWVIS+ QWV+A+T V WV++L + +  NTV L+G+HQH+L+ P+ Q+A
Subjt:  PSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQNA

Query:  LCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQLT
        LC+DQ WV QVV+S+LAE+L SSLEPYS  KL  + GQKLREDT++S+KHGPS VDH Q T
Subjt:  LCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQLT

RLN33992.1 hypothetical protein C2845_PM03G05550 [Panicum miliaceum]1.9e-5350.41Show/hide
Query:  MSPSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQ
        + P +VVD V +VVG++L+  LS ++GL++ES+HGEHG+ ++LELL+L+  +GL V+ Q + VEA+  V+ V DL E AAGN VALDGAH+HDL+GPDG+
Subjt:  MSPSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQ

Query:  NALCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQLT-----------SSSVPAVVTGELSGEVGWWLAREWAQ
        +AL VDQA V +VVE +LAEDL + LEP  L +L A+AG++L ED A+ ++HGP+GVD  QL               VPAVV GEL+G+V   LA E A+
Subjt:  NALCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQLT-----------SSSVPAVVTGELSGEVGWWLAREWAQ

Query:  VLDTVGAVPWAAGGNL--LAGSFPHADSSIALNFRGVGGELH
        VLD VGAVP AAG     L     H D+++A      GG  H
Subjt:  VLDTVGAVPWAAGGNL--LAGSFPHADSSIALNFRGVGGELH

RXH86399.1 hypothetical protein DVH24_017452 [Malus domestica]4.2e-5363.98Show/hide
Query:  PSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQNA
        P IV DWV KVVG++LQW+L+ +NGL+KES+HGEHGQPSILELL+L+ S+  WV+ +TQWVEAS  V WV  L E AAGN+V+L+ AHQH L  PDGQ+A
Subjt:  PSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQNA

Query:  LCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQLT
        LC+DQA V QVVE++LAEDL S LEP+   +L  +AGQ+L E+ ++SS+HGPSGVDHF+LT
Subjt:  LCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQLT

VVW58041.1 unnamed protein product, partial [Nymphaea colorata]1.5e-5547.24Show/hide
Query:  PSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQNA
        P IVVDWV +VV Q+LQ TL+ +NGL+KE +HGEHG+ ++L+LL+LQF + L VI QTQW+EA+TWV WV  L EW+A N + L+  H++DL  PDGQ+A
Subjt:  PSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQNA

Query:  LCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQL-----------TSSSVPAVVTGELSGEVGWWLAREWAQVL
        L +DQA V QVV+SSL EDL + LEP SL +L ++  ++LRED  + ++H P G+DH +L            +S VPA+VT E +GEVG     E A+VL
Subjt:  LCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQL-----------TSSSVPAVVTGELSGEVGWWLAREWAQVL

Query:  DTVGAVPWAAGGN--LLAGSFPHADSSIALNFRGVGGELHGLASQRWGGESHCR
        +TV  +P A GG+   L     H D++I     G    +   A +   GESH R
Subjt:  DTVGAVPWAAGGN--LLAGSFPHADSSIALNFRGVGGELHGLASQRWGGESHCR

TrEMBL top hitse value%identityAlignment
A0A2P2LQQ4 Chlorophyll a-b binding protein of LHCII type 1-like7.6e-7761.24Show/hide
Query:  MSPSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQ
        +SPSIVVD +SKVV QILQW+L+S+NGLNKES+H EHGQ +IL+LL+LQ S+ LWVISQ+QWV+A+T V+WV DL E    NTV L  +HQ +L+ PDGQ
Subjt:  MSPSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQ

Query:  NALCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQL-----------TSSSVPAVVTGELSGEVGWWLAREWAQ
        +AL +DQA V QVV+++LAEDL S LEP SLT+L +I  Q+LREDTA+ SKHGPS VDH +L             S VPAVVTGEL+ +VGW L REWAQ
Subjt:  NALCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQL-----------TSSSVPAVVTGELSGEVGWWLAREWAQ

Query:  VLDTVGAVPWAAGGNLLAGSFPHADSSIALNFRGVGGELHGLASQRWGGESHCRGSHW
        VL+TV AVPWA  GN L  SF H D++IA   RG G ELHGLA QR  GE H   SH+
Subjt:  VLDTVGAVPWAAGGNLLAGSFPHADSSIALNFRGVGGELHGLASQRWGGESHCRGSHW

A0A2P2LQR3 Chlorophyll a-b binding proteinic1.1e-7062.45Show/hide
Query:  MSPSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQ
        +SPSIVVD +SKVV QILQW+L+S+NGLNKES+H EHGQ +IL+LL+LQ S+ LWVISQ+QWV+A+T V+WV DL E    NTV L  +HQ +L+ PDGQ
Subjt:  MSPSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQ

Query:  NALCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQL-----------TSSSVPAVVTGELSGEVGWWLAREWAQ
        +AL +DQA V QVV+++LAEDL S LEP SLT+L +I  Q+LREDTA+ SKHGPS VDH +L             S VPAVVTGEL+ +VGW L REW Q
Subjt:  NALCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQL-----------TSSSVPAVVTGELSGEVGWWLAREWAQ

Query:  VLDTVGAVPWAAGGNLLAGSFPHADSSIA
        VLDTVGA+PWAA GN L G F H D++IA
Subjt:  VLDTVGAVPWAAGGNLLAGSFPHADSSIA

A0A3L6T734 Uncharacterized protein9.1e-5450.41Show/hide
Query:  MSPSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQ
        + P +VVD V +VVG++L+  LS ++GL++ES+HGEHG+ ++LELL+L+  +GL V+ Q + VEA+  V+ V DL E AAGN VALDGAH+HDL+GPDG+
Subjt:  MSPSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQ

Query:  NALCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQLT-----------SSSVPAVVTGELSGEVGWWLAREWAQ
        +AL VDQA V +VVE +LAEDL + LEP  L +L A+AG++L ED A+ ++HGP+GVD  QL               VPAVV GEL+G+V   LA E A+
Subjt:  NALCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQLT-----------SSSVPAVVTGELSGEVGWWLAREWAQ

Query:  VLDTVGAVPWAAGGNL--LAGSFPHADSSIALNFRGVGGELH
        VLD VGAVP AAG     L     H D+++A      GG  H
Subjt:  VLDTVGAVPWAAGGNL--LAGSFPHADSSIALNFRGVGGELH

A0A5K1F0S1 Uncharacterized protein (Fragment)7.4e-5647.24Show/hide
Query:  PSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQNA
        P IVVDWV +VV Q+LQ TL+ +NGL+KE +HGEHG+ ++L+LL+LQF + L VI QTQW+EA+TWV WV  L EW+A N + L+  H++DL  PDGQ+A
Subjt:  PSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQNA

Query:  LCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQL-----------TSSSVPAVVTGELSGEVGWWLAREWAQVL
        L +DQA V QVV+SSL EDL + LEP SL +L ++  ++LRED  + ++H P G+DH +L            +S VPA+VT E +GEVG     E A+VL
Subjt:  LCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQL-----------TSSSVPAVVTGELSGEVGWWLAREWAQVL

Query:  DTVGAVPWAAGGN--LLAGSFPHADSSIALNFRGVGGELHGLASQRWGGESHCR
        +TV  +P A GG+   L     H D++I     G    +   A +   GESH R
Subjt:  DTVGAVPWAAGGN--LLAGSFPHADSSIALNFRGVGGELHGLASQRWGGESHCR

A0A6A6MR52 Chlorophyll a-b binding protein, chloroplastic1.1e-5959.9Show/hide
Query:  MSPSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQ
        +SP IVVD VS VV Q+LQW+LS +NGLNKES+HGEH Q +IL+LL+LQ S+  W++SQ QWV+ASTWVDWV DL EW  G++V L+G HQH L  PDGQ
Subjt:  MSPSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQ

Query:  NALCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQLT-----------SSSVPAVVTGELSGEVGW
        +ALC+DQAWV QVV+++LAEDL S LEP+ L +L ++A Q+L +D  + SKHGPS VDHF+LT           +SSVPA+VT EL+ +VGW
Subjt:  NALCVDQAWVPQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQLT-----------SSSVPAVVTGELSGEVGW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCCAAGCATTGTTGTTGACTGGGTCAGCAAGGTGGTCGGCCAAATTCTCCAATGGACCCTTTCCAGTAACAATGGCCTGAACAAAGAATCCAAACATGGAGAACA
TGGCCAACCTTCCATTCTTGAGCTCCTTAACCTTCAATTCAGCGAAGGCCTCTGGGTCATCAGCCAAACCCAATGGGTCGAAGCTTCCACCTGGGTAGATTGGGTCAGTG
ATCTCCCCGAGTGGGCCGCCGGCAATACGGTAGCCCTCGACGGCGCCCATCAACACGACCTGAGTGGCCCAGATGGCCAAAATGCTCTGTGCGTGGATCAAGCTTGGGTT
CCCCAAGTAGTCGAGTCCTCCCTCGCTGAAGATTTGAGATCCAGCCTTGAACCATACAGCCTCACCAAACTTCACGCCATTGCGGGACAGAAGCTCAGGGAAGACACAGC
CCAAAGCTCCAAGCATGGCCCATCTGGAGTGGATCACTTCCAACTCACGTCCAGCAGTGTCCCAGCCGTAGTCACCGGGGAACTCTCCGGTGAGGTAGGATGGTGGCTCG
CCAGAGAATGGGCCCAAGTACTTGACACGGTCGGGGCCGTACCATGGGCTGCCGGAGGAAACTTGCTTGCTGGCAGTTTTCCTCATGCTGACTCTTCCATTGCCCTGAAT
TTCAGGGGTGTTGGGGGAGAGCTTCACGGCCTTGCCAGCCAGAGATGGGGAGGAGAGAGCCATTGTAGAGGCAGCCATTGGAATGATTCAGAAGGAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCCCAAGCATTGTTGTTGACTGGGTCAGCAAGGTGGTCGGCCAAATTCTCCAATGGACCCTTTCCAGTAACAATGGCCTGAACAAAGAATCCAAACATGGAGAACA
TGGCCAACCTTCCATTCTTGAGCTCCTTAACCTTCAATTCAGCGAAGGCCTCTGGGTCATCAGCCAAACCCAATGGGTCGAAGCTTCCACCTGGGTAGATTGGGTCAGTG
ATCTCCCCGAGTGGGCCGCCGGCAATACGGTAGCCCTCGACGGCGCCCATCAACACGACCTGAGTGGCCCAGATGGCCAAAATGCTCTGTGCGTGGATCAAGCTTGGGTT
CCCCAAGTAGTCGAGTCCTCCCTCGCTGAAGATTTGAGATCCAGCCTTGAACCATACAGCCTCACCAAACTTCACGCCATTGCGGGACAGAAGCTCAGGGAAGACACAGC
CCAAAGCTCCAAGCATGGCCCATCTGGAGTGGATCACTTCCAACTCACGTCCAGCAGTGTCCCAGCCGTAGTCACCGGGGAACTCTCCGGTGAGGTAGGATGGTGGCTCG
CCAGAGAATGGGCCCAAGTACTTGACACGGTCGGGGCCGTACCATGGGCTGCCGGAGGAAACTTGCTTGCTGGCAGTTTTCCTCATGCTGACTCTTCCATTGCCCTGAAT
TTCAGGGGTGTTGGGGGAGAGCTTCACGGCCTTGCCAGCCAGAGATGGGGAGGAGAGAGCCATTGTAGAGGCAGCCATTGGAATGATTCAGAAGGAAATTGA
Protein sequenceShow/hide protein sequence
MSPSIVVDWVSKVVGQILQWTLSSNNGLNKESKHGEHGQPSILELLNLQFSEGLWVISQTQWVEASTWVDWVSDLPEWAAGNTVALDGAHQHDLSGPDGQNALCVDQAWV
PQVVESSLAEDLRSSLEPYSLTKLHAIAGQKLREDTAQSSKHGPSGVDHFQLTSSSVPAVVTGELSGEVGWWLAREWAQVLDTVGAVPWAAGGNLLAGSFPHADSSIALN
FRGVGGELHGLASQRWGGESHCRGSHWNDSEGN