CuGenDBv2

Gene ID	Lsi01G001890
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	AWPM-19-like protein
Genome location	chr01:1808436..1809939
RNA-Seq Expression	Lsi01G001890
Synteny	Lsi01G001890
Gene Ontology terms	NA
InterPro domains	IPR008390 - AWPM-19-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0052579.1 AWPM-19-like protein [Cucumis melo var. makuwa]

1.1e-36

60.13

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Query:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------
        MK IAA ILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT                                         
Subjt:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------

Query:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS
                  GFAWKEIA+TVTSGHLIALEA +I+LSVTQFVYTAI+ WTSTS
Subjt:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS

TYK13246.1 uncharacterized protein E5676_scaffold255G008640 [Cucumis melo var. makuwa]

1.1e-36

60.13

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Query:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------
        MK IAA ILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT                                         
Subjt:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------

Query:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS
                  GFAWKEIA+TVTSGHLIALEA +I+LSVTQFVYTAI+ WTSTS
Subjt:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS

XP_004134640.1 uncharacterized protein LOC101209586 [Cucumis sativus]

2.4e-36

58.82

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Query:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------
        MK IAA ILFFNFCIC+VIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT                                         
Subjt:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------

Query:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS
                  GFAWKEIA+TVTSGHLIALEAF+I+LS+TQFVYTAI+ W STS
Subjt:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS

XP_008439689.1 PREDICTED: uncharacterized protein LOC103484407 [Cucumis melo]

1.1e-36

60.13

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Query:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------
        MK IAA ILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT                                         
Subjt:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------

Query:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS
                  GFAWKEIA+TVTSGHLIALEA +I+LSVTQFVYTAI+ WTSTS
Subjt:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS

XP_038882133.1 uncharacterized protein LOC120073380 isoform X2 [Benincasa hispida]

2.2e-37

62.5

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Query:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------
        MK IAA ILFFNFCICIVIFGIGGWVMNHT+DNGFVIGAGFEVP YFSPIFFQIGNSAT                                         
Subjt:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------

Query:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTST
                  GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAI+ WTST
Subjt:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTST

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KNQ2 Uncharacterized protein

1.2e-36

58.82

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Query:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------
        MK IAA ILFFNFCIC+VIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT                                         
Subjt:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------

Query:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS
                  GFAWKEIA+TVTSGHLIALEAF+I+LS+TQFVYTAI+ W STS
Subjt:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS

A0A1S3AZB2 uncharacterized protein LOC103484407

5.3e-37

60.13

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Query:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------
        MK IAA ILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT                                         
Subjt:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------

Query:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS
                  GFAWKEIA+TVTSGHLIALEA +I+LSVTQFVYTAI+ WTSTS
Subjt:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS

A0A5A7UGF2 AWPM-19-like protein

5.3e-37

60.13

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Query:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------
        MK IAA ILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT                                         
Subjt:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------

Query:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS
                  GFAWKEIA+TVTSGHLIALEA +I+LSVTQFVYTAI+ WTSTS
Subjt:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS

A0A5D3CS83 Uncharacterized protein

5.3e-37

60.13

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Query:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------
        MK IAA ILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT                                         
Subjt:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------

Query:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS
                  GFAWKEIA+TVTSGHLIALEA +I+LSVTQFVYTAI+ WTSTS
Subjt:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS

A0A6J1IM08 uncharacterized protein LOC111478636

1.1e-31

54.9

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Query:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------
        M+ IAA+I FFNFCI ++IFGIGGWVMNH+IDNGFVIGA FEVP YFSPIFFQIGN+AT                                         
Subjt:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------

Query:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS
                  GFAWKEI+ TVTS HL+ALEAFLIILSVTQF+YTAI+ WTSTS
Subjt:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G29520.1 AWPM-19-like family protein

2.7e-17

35.17

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Query:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------
        +K +A+ +L  NFC+ +++ GIGGW MN  ID+GF +G   E+P +FSPI+F +GN+AT                                         
Subjt:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT-----------------------------------------

Query:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTA
                  GFAWKEI L   +  L  +EAFLIILSVTQ +Y A
Subjt:  ----------GFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTA

AT5G46530.1 AWPM-19-like family protein

3.6e-14

34.48

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Query:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSATGF---------------------------------------
        MK +A+ +L  NFC+  ++ GIG W MN  I++GF+IGA + +P +FSPI F +GN+ATGF                                       
Subjt:  MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSATGF---------------------------------------

Query:  -AW-----------KEIALTVTSGHLIALEAFLIILSVTQFVYTA
         AW           KEI L + +  L  +EAFLIILS TQ +Y A
Subjt:  -AW-----------KEIALTVTSGHLIALEAFLIILSVTQFVYTA

Sequences

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CDS sequence

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ATGAAGACGATTGCAGCGGCGATTTTGTTTTTTAATTTCTGCATATGCATCGTCATTTTCGGAATCGGTGGCTGGGTGATGAATCACACAATTGATAATGGATTTGTTAT
AGGTGCAGGATTTGAAGTTCCTGACTATTTTTCTCCAATTTTCTTCCAAATTGGGAACTCTGCCACTGGGTTTGCTTGGAAAGAGATTGCTCTGACTGTCACCAGTGGCC
ATCTGATTGCATTGGAGGCTTTCCTGATTATCCTTTCAGTTACGCAATTTGTTTATACAGCAATCATGGCGTGGACCTCAACCAGCTAG

mRNA sequence

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CACTCTTCCCCTTTCCAACCAATTCTGACCCCTTTTGGCAAGCAAAGAACCTGACATTCTCCATTAAAATGCTTTCAACAAAATCCCAACTCTCCACAGGATGAACATTC
AACTCTAACTCATTCATCTTCATCTCAAAAACCTTCCTTCTTCCATATAAGCCAGTACAAAACATGAAGACGATTGCAGCGGCGATTTTGTTTTTTAATTTCTGCATATG
CATCGTCATTTTCGGAATCGGTGGCTGGGTGATGAATCACACAATTGATAATGGATTTGTTATAGGTGCAGGATTTGAAGTTCCTGACTATTTTTCTCCAATTTTCTTCC
AAATTGGGAACTCTGCCACTGGGTTTGCTTGGAAAGAGATTGCTCTGACTGTCACCAGTGGCCATCTGATTGCATTGGAGGCTTTCCTGATTATCCTTTCAGTTACGCAA
TTTGTTTATACAGCAATCATGGCGTGGACCTCAACCAGCTAGTAGACTCTAGAAATAGTGTTTTCCTAACGCTTTGTTTGGGTTTCTCTTCATTTTTTTTTTTTCATTTA
TTTTTCTCAACTTCAAATCTTGGTTGCAATCATGTAAAATGGGAGAAACTTGCAATGTATTGGCAGATGAAGTACAGAAGGTAATATGAGAATTGGTGTGCAAAAAAAGA
AGAATAAAATTTCAATGACTTTGATGACTTCATTTGCTCCATAACAGTTTCAACAGTATGCACAAAAAAAATTTCAAGTCTAA

Protein sequence

Show/hide protein sequence

MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSATGFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS

Lsi01G001890 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome