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Lsi01G002000 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G002000
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionS-protein homolog
Genome locationchr01:1881234..1881680
RNA-Seq ExpressionLsi01G002000
SyntenyLsi01G002000
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052584.1 pumilio-like protein 15-like [Cucumis melo var. makuwa]2.8e-6581.43Show/hide
Query:  LITYVVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPER
        L+ YVVV++ MMG+ C  GSKTMPP SSWKVV+FNQLSPGQ+L++HCKSKD+DLG HSLRVGE FSWKFKEN+FSTTRFWC+LTSSSKK VTMDVFWPER
Subjt:  LITYVVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPER

Query:  HNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWDN
        H+WLAYRCNY TCIWVAQDDGIY+VNV  N REFVRKWDN
Subjt:  HNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWDN

KAE7997944.1 hypothetical protein FH972_002530 [Carpinus fangiana]1.3e-3347.55Show/hide
Query:  ITYVVVIMVMMGQPCWAGSKTMP----PLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFW
        + +++V+ + MG    +  +T+     PL  W V ++N +  G+ L LHCKSKDDDLG+ +L VG+D SW FKEN   TT +WC +    K H T+DVFW
Subjt:  ITYVVVIMVMMGQPCWAGSKTMP----PLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFW

Query:  PERHN-WLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD
         ER N WL+YRCN++ CIW+A+DDGIYL  +P N  +FV KW+
Subjt:  PERHN-WLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD

KAE8647731.1 hypothetical protein Csa_003821 [Cucumis sativus]2.5e-5876.87Show/hide
Query:  VIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAY
        V++ MMG+PCW GSKTM PLS WKVVIF+QL+PG+ L +HCKSKD+DLG HSL+V ++FSWKFKEN+FSTT FWCTLT+SSKK VTMDVFWPERHNWLA 
Subjt:  VIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAY

Query:  RCNYETCIWVAQDDGIYLVNVPMNSREFVRKWDN
        RC+Y TCIWVAQDDGIYLVN   N+REFVRKWD+
Subjt:  RCNYETCIWVAQDDGIYLVNVPMNSREFVRKWDN

KAG7034676.1 S-protein-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]7.3e-5072Show/hide
Query:  MVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRC
        M MMG P  AGSKTMPPLS WKVVIFNQL+PGQTL  HCKSK+DDLG+H L+VGE +SW+FKENV STTRFWCT T+S  K + MDVFWPE H WLAYRC
Subjt:  MVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRC

Query:  NYETCIWVAQDDGIYLVNVPMNSRE
        N  +C+WVAQDDG+YL N+P   RE
Subjt:  NYETCIWVAQDDGIYLVNVPMNSRE

XP_034229618.1 S-protein homolog 1-like [Prunus dulcis]1.4e-3247.86Show/hide
Query:  LITYVVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPE-
        ++ +V V ++ +  PC  GS      ++W V + N LS G+TL  HCKSKDDDLG  +L  G +F+W FKEN F TT +WC + S+ +KH  +DVFW E 
Subjt:  LITYVVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPE-

Query:  RHNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD
         H+WL YRCN++ CIW+A+DDGIY+  +P N  EF  KW+
Subjt:  RHNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD

TrEMBL top hitse value%identityAlignment
A0A5A7UB41 S-protein homolog1.3e-6581.43Show/hide
Query:  LITYVVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPER
        L+ YVVV++ MMG+ C  GSKTMPP SSWKVV+FNQLSPGQ+L++HCKSKD+DLG HSLRVGE FSWKFKEN+FSTTRFWC+LTSSSKK VTMDVFWPER
Subjt:  LITYVVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPER

Query:  HNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWDN
        H+WLAYRCNY TCIWVAQDDGIY+VNV  N REFVRKWDN
Subjt:  HNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWDN

A0A5E4EJG4 S-protein homolog6.7e-3347.86Show/hide
Query:  LITYVVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPE-
        ++ +V V ++ +  PC  GS      ++W V + N LS G+TL  HCKSKDDDLG  +L  G +F+W FKEN F TT +WC + S+ +KH  +DVFW E 
Subjt:  LITYVVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPE-

Query:  RHNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD
         H+WL YRCN++ CIW+A+DDGIY+  +P N  EF  KW+
Subjt:  RHNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD

A0A5N6QHU0 S-protein homolog6.1e-3447.55Show/hide
Query:  ITYVVVIMVMMGQPCWAGSKTMP----PLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFW
        + +++V+ + MG    +  +T+     PL  W V ++N +  G+ L LHCKSKDDDLG+ +L VG+D SW FKEN   TT +WC +    K H T+DVFW
Subjt:  ITYVVVIMVMMGQPCWAGSKTMP----PLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFW

Query:  PERHN-WLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD
         ER N WL+YRCN++ CIW+A+DDGIYL  +P N  +FV KW+
Subjt:  PERHN-WLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD

A0A6J5Y6Z2 S-protein homolog3.3e-3247.86Show/hide
Query:  LITYVVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPE-
        ++ +V V M+ +  PC  GS      +SW V + N LS G+TL  HCKSKDDDLG  +L  G +F+W FKEN   TT +WC + S+ + H  +DVFW E 
Subjt:  LITYVVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPE-

Query:  RHNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD
         H WL YRCN++ CIW+A+DDGIY+  +P N  EF  KW+
Subjt:  RHNWLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD

A0A6P4ABD6 S-protein homolog5.7e-3247.45Show/hide
Query:  VVIMVMMGQPCWAGSK--TMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPE-RHN
        V+++  M +PC   ++  T  PL  + + I N LS G+ L +HC+SKDDDLG H+L  G  F+W F+ N + TTRFWC       +H   DVFWPE RH 
Subjt:  VVIMVMMGQPCWAGSK--TMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPE-RHN

Query:  WLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD
        WL  RC+Y+ CIW A+DDG YL NVP+N  E + KW+
Subjt:  WLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWD

SwissProt top hitse value%identityAlignment
F4JLQ5 S-protein homolog 23.1e-1135.05Show/hide
Query:  PLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDG
        P S   V I N L    TL  HCKSKDDDLGN +L+ GE +S+ F    F  T ++C+ +  ++ H + D++   R +    +C  + C+W  + +G
Subjt:  PLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDG

F4JLS0 S-protein homolog 12.1e-2341.03Show/hide
Query:  MPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGI
        +P +S W+V + N L+ G+TL +HCKSK+DDLG  +L+    FSW F EN+  +T FWC + +    H+ ++VFW +    L +RC ++ CIW A+ DG+
Subjt:  MPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGI

Query:  YLVNVPMNSREFVRKWD
        YL N         RKW+
Subjt:  YLVNVPMNSREFVRKWD

P0DN92 S-protein homolog 241.6e-1041.98Show/hide
Query:  LSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIY
        L +HCKS+DDDLG H L  GE F WKF  N   +T ++C  +    K    +++   R N   YRC    C W A+ DGIY
Subjt:  LSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIY

Q2HQ46 S-protein homolog 741.4e-2239.66Show/hide
Query:  MPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGI
        +P +S W+V + N L+ G+TL +HCKSK++DLG+ +L+  + FSW F EN+  +T FWC + S    H+ + VFW +    L +RC+++ C+W A++DG+
Subjt:  MPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGI

Query:  YLVNVPMNSREFVRKW
        YL N  +       KW
Subjt:  YLVNVPMNSREFVRKW

Q40975 Self-incompatibility protein S11.6e-1034.04Show/hide
Query:  KVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIY
        +V I N+   G+++ +HC+SKD+DL N ++  G D S+ F+E+ F TT F+C L    +       +  +R +    RC+ + C+W   DDG+Y
Subjt:  KVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGIY

Arabidopsis top hitse value%identityAlignment
AT4G16195.1 Plant self-incompatibility protein S1 family2.2e-1235.05Show/hide
Query:  PLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDG
        P S   V I N L    TL  HCKSKDDDLGN +L+ GE +S+ F    F  T ++C+ +  ++ H + D++   R +    +C  + C+W  + +G
Subjt:  PLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDG

AT4G16295.1 S-protein homologue 11.5e-2441.03Show/hide
Query:  MPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGI
        +P +S W+V + N L+ G+TL +HCKSK+DDLG  +L+    FSW F EN+  +T FWC + +    H+ ++VFW +    L +RC ++ CIW A+ DG+
Subjt:  MPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGI

Query:  YLVNVPMNSREFVRKWD
        YL N         RKW+
Subjt:  YLVNVPMNSREFVRKWD

AT4G29035.1 Plant self-incompatibility protein S1 family9.6e-2439.66Show/hide
Query:  MPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGI
        +P +S W+V + N L+ G+TL +HCKSK++DLG+ +L+  + FSW F EN+  +T FWC + S    H+ + VFW +    L +RC+++ C+W A++DG+
Subjt:  MPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHNWLAYRCNYETCIWVAQDDGI

Query:  YLVNVPMNSREFVRKW
        YL N  +       KW
Subjt:  YLVNVPMNSREFVRKW

AT5G04347.1 Plant self-incompatibility protein S1 family2.5e-1137.62Show/hide
Query:  VVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSS--KKHVTMDVFWPERHNWLA-YRCNYETCIWVAQDDGIYLVNV
        +++ N+L+  + L + C+SKDD+LG+H LRVG+     F +NV+  T FWC L      K HV  D +   R  W A     Y   +W+A++DGIY    
Subjt:  VVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSS--KKHVTMDVFWPERHNWLA-YRCNYETCIWVAQDDGIYLVNV

Query:  P
        P
Subjt:  P

AT5G04350.1 Plant self-incompatibility protein S1 family1.4e-1433.04Show/hide
Query:  CWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTS--SSKKHVTMDVFWPERHNWLAYRCNYE--
        C   S     +   KVV+ NQL   + L +HC+SKDDDLG H L++G+D+ + F +N++ TT F C +    + K H+          +++AY  ++   
Subjt:  CWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTS--SSKKHVTMDVFWPERHNWLAYRCNYE--

Query:  ---TCIWVAQDDGIY
           +C W+ ++DGIY
Subjt:  ---TCIWVAQDDGIY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTTTTGATGAATTATGGCCTCATTACATATGTTGTAGTGATAATGGTGATGATGGGTCAGCCATGTTGGGCAGGCTCAAAAACAATGCCACCATTGAGTTCATG
GAAGGTGGTGATTTTTAACCAATTGAGTCCGGGCCAAACTTTATCCCTTCATTGCAAATCGAAAGATGACGATTTGGGCAATCATTCTCTACGAGTGGGTGAAGATTTTT
CATGGAAATTCAAAGAGAACGTATTTTCAACAACTCGTTTTTGGTGTACTTTAACAAGTTCATCAAAGAAACATGTTACAATGGATGTGTTTTGGCCAGAGAGACACAAT
TGGCTTGCTTACAGATGCAATTACGAGACTTGTATTTGGGTTGCTCAAGATGATGGTATTTATTTGGTGAATGTTCCTATGAATTCAAGGGAGTTTGTGCGTAAATGGGA
CAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGTTTTGATGAATTATGGCCTCATTACATATGTTGTAGTGATAATGGTGATGATGGGTCAGCCATGTTGGGCAGGCTCAAAAACAATGCCACCATTGAGTTCATG
GAAGGTGGTGATTTTTAACCAATTGAGTCCGGGCCAAACTTTATCCCTTCATTGCAAATCGAAAGATGACGATTTGGGCAATCATTCTCTACGAGTGGGTGAAGATTTTT
CATGGAAATTCAAAGAGAACGTATTTTCAACAACTCGTTTTTGGTGTACTTTAACAAGTTCATCAAAGAAACATGTTACAATGGATGTGTTTTGGCCAGAGAGACACAAT
TGGCTTGCTTACAGATGCAATTACGAGACTTGTATTTGGGTTGCTCAAGATGATGGTATTTATTTGGTGAATGTTCCTATGAATTCAAGGGAGTTTGTGCGTAAATGGGA
CAACTAA
Protein sequenceShow/hide protein sequence
MNVLMNYGLITYVVVIMVMMGQPCWAGSKTMPPLSSWKVVIFNQLSPGQTLSLHCKSKDDDLGNHSLRVGEDFSWKFKENVFSTTRFWCTLTSSSKKHVTMDVFWPERHN
WLAYRCNYETCIWVAQDDGIYLVNVPMNSREFVRKWDN