CuGenDBv2

Gene ID	Lsi01G002070
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	cyclic phosphodiesterase-like
Genome location	chr01:1941996..1944097
RNA-Seq Expression	Lsi01G002070
Synteny	Lsi01G002070
Gene Ontology terms	GO:0009187 - cyclic nucleotide metabolic process (biological process) GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity (molecular function)
InterPro domains	IPR009097 - Cyclic phosphodiesterase IPR012386 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581386.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-90

86.84

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Query:  MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANPES     SEGEKNVYSVWALPPEDVTARI+ LMNSL SEFGGPQFEPHITVVGAIRLT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLL
Subjt:  MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP
        IHPTT+VVETSSHCCGHFGY NSTPYMPH+SLLY+NISDE+KKQAK++A+KLDEA+NGL FPITRLALYKTDT D+TL+SWEKIAE DLP
Subjt:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP

XP_022978766.1 cyclic phosphodiesterase-like [Cucurbita maxima]

6.3e-91

86.84

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Query:  MANPES----ASEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANPES     SEGEKNVYSVWALPPEDVTARI+ LMNSL SEFGGPQFEPHITVVGAIRLT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLL
Subjt:  MANPES----ASEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP
        IHPTT+VVETSSHCCGHFGYKNSTPYMPH+SLLY+NISDE+KKQAK++A+KLDEA+NGL FP+TRLALYKTDT D+TL+SWEKIAE DLP
Subjt:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP

XP_023522563.1 cyclic phosphodiesterase-like [Cucurbita pepo subsp. pepo]

8.2e-91

87.37

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Query:  MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANPES     SEGEKNVYSVWALPPEDVTARI+ LMNSL SEFGGPQFEPHITVVGAIRLT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLL
Subjt:  MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP
        IHPT EVVETSSHCCGHFGYKNSTPYMPH+SLLY+NISDE+KKQAK++A+KLDEA+NGL FPITRLALYKTDT D+TL+SWEKIAE DLP
Subjt:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP

XP_023543945.1 cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo]

3.7e-91

87.37

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Query:  MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANPES     SEGEKNVYSVWALPPEDVTARI+ LMNSL SEFGGPQFEPHITVVGAIRLT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLL
Subjt:  MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP
        IHPTT+VVETSSHCCGHFGYKNSTPYMPH+SLLY+NISDE+KKQAK++A+KLDEA+NGL FPITRLALYKTDT D+TL+SWEKIAE DLP
Subjt:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP

XP_038882567.1 cyclic phosphodiesterase-like [Benincasa hispida]

2.2e-96

92.63

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Query:  MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANPESA    SE E NVYSVWALPPEDVTARIKNLMNSL SEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
Subjt:  MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP
        IH TTEVVETSSHCCGHFGYKNSTPYMPHMSLLY+NISDEKKKQAK IADKLDEAVNGL+FPITRLALYKTDTED+TL+SWEKIAEH+LP
Subjt:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KLS9 Uncharacterized protein

6.2e-84

82.54

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Query:  MANPESAS----EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        M NPESAS    E E +VYSVWALPPEDV+ARI+NLM SL SEFGGP FEPHITVVGAIRLT +DAL KFR+ACQG+KAYQATVDHV+TGTFFYQCVFLL
Subjt:  MANPESAS----EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDL
        IHPTTEVVETSSH C HF +K+STPYMPHMSLLYS+ISDEK+KQAK+IADKLDEAVNGLRFPITRLAL KTDT D+TL+SW+KI EHDL
Subjt:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDL

A0A1S3AYZ1 cyclic phosphodiesterase-like

2.4e-88

85.71

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Query:  MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        M NPESA    SE E NVYSVWALPPEDV+ARI+NLMNSL SEFGGPQFEPHITVVGAIRLT +DALNKF +ACQG+KAYQATVDHVSTGTFFYQCVFLL
Subjt:  MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDL
        IHPTTEVVETSSH C HFG+KNSTPYMPHMSLLY++ISDEKKKQAK+IADKLDEAVNGL+FPITRLAL+KTDT D+TL+SWEKI EHDL
Subjt:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDL

A0A6J1EEQ8 cyclic phosphodiesterase-like

2.6e-82

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Query:  MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANP SA     EGE  +YSVWALPPEDV  +I +LM+SL SEFGGP+FEPHITVVGAIRLTP DALNKFRSAC+G+KAYQATVD VS GT FYQCVFLL
Subjt:  MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP
        IHPTTEVV+ SSHCCGHFGY NSTPYMPH+SLLY+NISDE KK+AK+IADKL+EAVNGL+ P+TRLALYKTDT D+TL+SWEKIAEHDLP
Subjt:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP

A0A6J1EGC1 cyclic phosphodiesterase-like

6.4e-89

86.32

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Query:  MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANPES     SEGEKNVYSVWALPPEDV ARI+ LMNSL SEFGGPQFEPHITVVGAIRLT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLL
Subjt:  MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP
        IHPTT+VVETSSHCCGHFGYKN TPYMPH+SLLY+NISDE+KKQAK++A+KLDEA+NGL FPITRLALYKTDT D+TL+SWEKIAE DLP
Subjt:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP

A0A6J1INY2 cyclic phosphodiesterase-like

3.1e-91

86.84

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Query:  MANPES----ASEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL
        MANPES     SEGEKNVYSVWALPPEDVTARI+ LMNSL SEFGGPQFEPHITVVGAIRLT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLL
Subjt:  MANPES----ASEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLL

Query:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP
        IHPTT+VVETSSHCCGHFGYKNSTPYMPH+SLLY+NISDE+KKQAK++A+KLDEA+NGL FP+TRLALYKTDT D+TL+SWEKIAE DLP
Subjt:  IHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP

SwissProt top hits

e value

%identity

Alignment

O04147 Cyclic phosphodiesterase

3.8e-54

57.8

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Query:  EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSS
        E +K+VYSVWALP E+   R K LM +L SEF GP+F PH+TV  +  LT D+A   F SAC GLKAY ATVD VSTGTFF+QCVFLL+  T EV+E   
Subjt:  EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSS

Query:  HCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIA
        HC  HF    +TPYMPH+SLLY+ +++E+KK A++ A  LD +++GL F + RLAL KTDTED+TLE+WE +A
Subjt:  HCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIA

Arabidopsis top hits

e value

%identity

Alignment

AT4G18930.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

2.7e-55

57.8

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Query:  EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSS
        E +K+VYSVWALP E+   R K LM +L SEF GP+F PH+TV  +  LT D+A   F SAC GLKAY ATVD VSTGTFF+QCVFLL+  T EV+E   
Subjt:  EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSS

Query:  HCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIA
        HC  HF    +TPYMPH+SLLY+ +++E+KK A++ A  LD +++GL F + RLAL KTDTED+TLE+WE +A
Subjt:  HCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIA

AT4G18940.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

1.7e-41

44.13

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Query:  EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAI--RLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVET
        E EK +Y++WA+P +DV  R++ LM  L SEFGGP F+PH+T+VG    +LT  +A   F+SAC+G K Y ATVD VS GT ++QC+++ +  T EV+  
Subjt:  EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAI--RLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVET

Query:  SSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDL
        + H   HF       Y+PHMS+LY ++++ +KK+A + A  LD +++GL F I R+AL+ TD +   + SW K+ EH L
Subjt:  SSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDL

Sequences

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CDS sequence

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ATGGCCAACCCAGAATCCGCCTCTGAAGGGGAAAAGAACGTGTATTCGGTGTGGGCTCTTCCTCCGGAAGATGTGACGGCCAGAATCAAGAACCTAATGAACAGCCTCAT
ATCCGAGTTCGGCGGGCCCCAATTCGAGCCACATATCACCGTTGTTGGGGCAATCCGTCTCACCCCTGACGATGCCCTCAACAAATTTCGCTCCGCTTGCCAGGGGCTTA
AGGCTTATCAAGCCACCGTCGATCATGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACTGAGGTGGTGGAGACTAGTTCACATTGC
TGTGGACATTTTGGTTACAAAAACTCTACCCCTTACATGCCCCATATGAGCCTACTGTATTCCAACATATCAGATGAAAAAAAGAAACAGGCAAAACAAATAGCAGACAA
GCTCGATGAAGCCGTGAACGGCCTGAGGTTCCCAATCACTCGACTTGCACTGTACAAAACAGACACTGAGGATCAAACTCTAGAGTCCTGGGAGAAAATTGCAGAACACG
ATCTTCCTTGA

mRNA sequence

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CTTCCTTTCACAATTTCACTGTAACAACTGTAACTGCATCCCTCCACGCAATACAATTGTCATCAAAACCAATTCCTCCCATTCCTACCGTCAACGGAATCGGAACTATA
ATACTCCATTTTATTTCAATCTTCTTCTCTTCTCCACTCCAATGGCCAACCCAGAATCCGCCTCTGAAGGGGAAAAGAACGTGTATTCGGTGTGGGCTCTTCCTCCGGAA
GATGTGACGGCCAGAATCAAGAACCTAATGAACAGCCTCATATCCGAGTTCGGCGGGCCCCAATTCGAGCCACATATCACCGTTGTTGGGGCAATCCGTCTCACCCCTGA
CGATGCCCTCAACAAATTTCGCTCCGCTTGCCAGGGGCTTAAGGCTTATCAAGCCACCGTCGATCATGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTA
TTCATCCTACCACTGAGGTGGTGGAGACTAGTTCACATTGCTGTGGACATTTTGGTTACAAAAACTCTACCCCTTACATGCCCCATATGAGCCTACTGTATTCCAACATA
TCAGATGAAAAAAAGAAACAGGCAAAACAAATAGCAGACAAGCTCGATGAAGCCGTGAACGGCCTGAGGTTCCCAATCACTCGACTTGCACTGTACAAAACAGACACTGA
GGATCAAACTCTAGAGTCCTGGGAGAAAATTGCAGAACACGATCTTCCTTGAAGTTAAGCTTCTGTTATACCCATGCCCCTTGAAGATCTAGATTATGTTCTGTTACACT
GTTTAACGTATTTTTTTCCAACAATGTCTGTACTGCTCTAGACTTCTTAACTGGGAAAAAATAAATGTCAGCCGAAGGCCTTGTTTGGAAGCTTACCAAGTTTCGTGATT
AGATTGTTTGAACCTCTTTTGTTTTTTGGAAAACAAGTTTGTGTTTATTTCATGTATGGCATGGAATTTAGGGAGGAAAAACCAAGCTTCATTACCCAAGGAAGATTACA
GACATTACTGCAAGCTCTTCCAATTAGTGAAAAGATTGCAAATGCTGAGATTACGCTTTACAGCATCAGAAGCCTACAAAATCAGTCATGGAAGTAAATCTTTACTTCTT
TCAGTATAATTGTAGTATGGAATTTTATCAAATTTGTATTCCCTTCCACCAATTACCACTCTAATTTCTCTATTTCCTATTTTATTCTTGTAGAGAAGGGAGTTGTCTTT
TTTTTTTTT

Protein sequence

Show/hide protein sequence

MANPESASEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHC
CGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP

Lsi01G002070 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome