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Lsi01G002140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G002140
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSeipin-2
Genome locationchr01:1969696..1970121
RNA-Seq ExpressionLsi01G002140
SyntenyLsi01G002140
Gene Ontology termsGO:0006629 - lipid metabolic process (biological process)
GO:0140042 - lipid droplet formation (biological process)
GO:0030176 - integral component of endoplasmic reticulum membrane (cellular component)
InterPro domainsIPR009617 - Seipin family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052594.1 seipin-2 [Cucumis melo var. makuwa]2.7e-6295.38Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT
        MLQFKSEPIRLLLT+LKLAPLVTGYISESQTL+IKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIY+AS ILESELPLFKRIIWYWRKTIYVWISMT
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT

Query:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS
        SFMMQLLF LVCCRPIILPRIRRRDGSAN+
Subjt:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS

KAG7026505.1 Seipin-2 [Cucurbita argyrosperma subsp. argyrosperma]6.7e-6189.93Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT
        MLQF+SEPIRLLLTILKLAPLVTGYISESQTLN+KLKG  EGNIPTACLRVTIEQRAEF+PGAGIPEIYDAS ILESELPLFKRIIWYWRKT+YVWISMT
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT

Query:  SFMMQLLFMLVCCRPIILP--RIRRRDGSANSSSMSNVI
        SFMMQLLFMLVCCRPIILP  R+RRRDGSAN SS  N I
Subjt:  SFMMQLLFMLVCCRPIILP--RIRRRDGSANSSSMSNVI

XP_004134598.1 seipin-2 [Cucumis sativus]2.3e-6194.62Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT
        MLQFKSEPIRLLLT+LKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEF+PGAGIPEIY+AS ILESELPLFKRIIWYWRKTIYVWISMT
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT

Query:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS
        SFMMQLLF LVCCRPIILPRIRRRD SAN+
Subjt:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS

XP_008439706.1 PREDICTED: seipin-2 [Cucumis melo]4.7e-6294.62Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT
        MLQFKSEPIRLLLT+LKLAPLVTGYISESQTL+IKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIY+AS ILESELPLFKRIIWYWRKTIYVWISMT
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT

Query:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS
        SFMMQLLF LVCCRP+ILPRIRRRDGSAN+
Subjt:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS

XP_022142206.1 seipin-2-like [Momordica charantia]4.0e-6187.14Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT
        MLQFKSEPIRLLLTILKLAPLVTGY+SE+QTLN+KL GFTEGNIPTACLRVT++QRAEF+PGAGIPEIYDAS ILESELPLFKRIIW+WRKT+YVWISMT
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT

Query:  SFMMQLLFMLVCCRPIILPRIRRRDGSANSSSMSNVISAQ
        SFMMQLLF LVCCRPIILPRIRR  GSAN+SS  N  SAQ
Subjt:  SFMMQLLFMLVCCRPIILPRIRRRDGSANSSSMSNVISAQ

TrEMBL top hitse value%identityAlignment
A0A0A0KLS3 Uncharacterized protein1.1e-6194.62Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT
        MLQFKSEPIRLLLT+LKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEF+PGAGIPEIY+AS ILESELPLFKRIIWYWRKTIYVWISMT
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT

Query:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS
        SFMMQLLF LVCCRPIILPRIRRRD SAN+
Subjt:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS

A0A1S3B005 seipin-22.3e-6294.62Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT
        MLQFKSEPIRLLLT+LKLAPLVTGYISESQTL+IKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIY+AS ILESELPLFKRIIWYWRKTIYVWISMT
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT

Query:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS
        SFMMQLLF LVCCRP+ILPRIRRRDGSAN+
Subjt:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS

A0A5D3CN25 Seipin-21.3e-6295.38Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT
        MLQFKSEPIRLLLT+LKLAPLVTGYISESQTL+IKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIY+AS ILESELPLFKRIIWYWRKTIYVWISMT
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT

Query:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS
        SFMMQLLF LVCCRPIILPRIRRRDGSAN+
Subjt:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS

A0A6J1CLI6 seipin-2-like1.9e-6187.14Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT
        MLQFKSEPIRLLLTILKLAPLVTGY+SE+QTLN+KL GFTEGNIPTACLRVT++QRAEF+PGAGIPEIYDAS ILESELPLFKRIIW+WRKT+YVWISMT
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT

Query:  SFMMQLLFMLVCCRPIILPRIRRRDGSANSSSMSNVISAQ
        SFMMQLLF LVCCRPIILPRIRR  GSAN+SS  N  SAQ
Subjt:  SFMMQLLFMLVCCRPIILPRIRRRDGSANSSSMSNVISAQ

E5GC21 Uncharacterized protein2.3e-6294.62Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT
        MLQFKSEPIRLLLT+LKLAPLVTGYISESQTL+IKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIY+AS ILESELPLFKRIIWYWRKTIYVWISMT
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT

Query:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS
        SFMMQLLF LVCCRP+ILPRIRRRDGSAN+
Subjt:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS

SwissProt top hitse value%identityAlignment
F4I340 Seipin-22.4e-4565.38Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT
        ML+F+SEPIRL+ T  K+ PLVTGY+SE QTL++KLKGF E +IPTACL++ IEQRAEF PGAGIPE+YDAS  +ES LP F++IIW WRKT++VWISM+
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT

Query:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS
         F+ +LLF LVCCRP+I+PR + RD S ++
Subjt:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS

Q8L615 Seipin-36.6e-4366.67Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGN-IPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISM
        M++F SEPIRL+ T+LK+APLVTGY+SE QTLN+KLKG  E + IPTACL++ IEQRAEF PGAGIPEIYDAS  LES+LP  KRIIW WRKT++VWISM
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGN-IPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISM

Query:  TSFMMQLLFMLVCCRPIILP----RIRRRDGS
        + F+M+LLF LV  RP+I+P    R ++RDG+
Subjt:  TSFMMQLLFMLVCCRPIILP----RIRRRDGS

Q9FFD9 Seipin-13.2e-1331.43Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT
        ML+F+S+PIRL  T +   PL+ G  +E+QT+ I      E    T  +R T+  RA+      +P++Y+A  ++ S+ P  KR+ + W+ T+ VW SM 
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT

Query:  SFMMQLLFMLVCCRPIILPRIRRRDGSANSSSMSNVISAQ
         ++  L  +L C RP++ P    R  S + +    V+  +
Subjt:  SFMMQLLFMLVCCRPIILPRIRRRDGSANSSSMSNVISAQ

Arabidopsis top hitse value%identityAlignment
AT1G29760.1 Putative adipose-regulatory protein (Seipin)1.7e-4665.38Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT
        ML+F+SEPIRL+ T  K+ PLVTGY+SE QTL++KLKGF E +IPTACL++ IEQRAEF PGAGIPE+YDAS  +ES LP F++IIW WRKT++VWISM+
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT

Query:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS
         F+ +LLF LVCCRP+I+PR + RD S ++
Subjt:  SFMMQLLFMLVCCRPIILPRIRRRDGSANS

AT2G34380.1 Putative adipose-regulatory protein (Seipin)4.7e-4466.67Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGN-IPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISM
        M++F SEPIRL+ T+LK+APLVTGY+SE QTLN+KLKG  E + IPTACL++ IEQRAEF PGAGIPEIYDAS  LES+LP  KRIIW WRKT++VWISM
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGN-IPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISM

Query:  TSFMMQLLFMLVCCRPIILP----RIRRRDGS
        + F+M+LLF LV  RP+I+P    R ++RDG+
Subjt:  TSFMMQLLFMLVCCRPIILP----RIRRRDGS

AT5G16460.1 Putative adipose-regulatory protein (Seipin)2.3e-1431.43Show/hide
Query:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT
        ML+F+S+PIRL  T +   PL+ G  +E+QT+ I      E    T  +R T+  RA+      +P++Y+A  ++ S+ P  KR+ + W+ T+ VW SM 
Subjt:  MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMT

Query:  SFMMQLLFMLVCCRPIILPRIRRRDGSANSSSMSNVISAQ
         ++  L  +L C RP++ P    R  S + +    V+  +
Subjt:  SFMMQLLFMLVCCRPIILPRIRRRDGSANSSSMSNVISAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACAGTTTAAAAGTGAGCCTATTCGCCTTTTACTGACTATCCTGAAGCTTGCACCTCTTGTTACTGGCTATATATCAGAGTCCCAGACTCTGAATATTAAGCTTAA
AGGTTTCACCGAAGGAAATATACCAACGGCCTGTCTGCGGGTTACAATTGAACAGCGAGCCGAGTTCAATCCTGGTGCTGGTATACCTGAAATATATGATGCATCTGCGA
TCCTCGAATCCGAACTTCCCCTCTTTAAAAGGATTATATGGTACTGGAGGAAGACTATCTATGTATGGATTAGCATGACATCATTTATGATGCAGTTGCTTTTTATGCTT
GTATGTTGTAGACCAATAATCCTTCCTAGAATAAGGAGAAGGGATGGATCTGCTAATTCAAGCTCCATGAGCAACGTCATCTCGGCACAAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTACAGTTTAAAAGTGAGCCTATTCGCCTTTTACTGACTATCCTGAAGCTTGCACCTCTTGTTACTGGCTATATATCAGAGTCCCAGACTCTGAATATTAAGCTTAA
AGGTTTCACCGAAGGAAATATACCAACGGCCTGTCTGCGGGTTACAATTGAACAGCGAGCCGAGTTCAATCCTGGTGCTGGTATACCTGAAATATATGATGCATCTGCGA
TCCTCGAATCCGAACTTCCCCTCTTTAAAAGGATTATATGGTACTGGAGGAAGACTATCTATGTATGGATTAGCATGACATCATTTATGATGCAGTTGCTTTTTATGCTT
GTATGTTGTAGACCAATAATCCTTCCTAGAATAAGGAGAAGGGATGGATCTGCTAATTCAAGCTCCATGAGCAACGTCATCTCGGCACAAGATTAG
Protein sequenceShow/hide protein sequence
MLQFKSEPIRLLLTILKLAPLVTGYISESQTLNIKLKGFTEGNIPTACLRVTIEQRAEFNPGAGIPEIYDASAILESELPLFKRIIWYWRKTIYVWISMTSFMMQLLFML
VCCRPIILPRIRRRDGSANSSSMSNVISAQD