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Lsi01G002260 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G002260
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr01:2067695..2068685
RNA-Seq ExpressionLsi01G002260
SyntenyLsi01G002260
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647723.1 hypothetical protein Csa_003961 [Cucumis sativus]1.1e-3782.69Show/hide
Query:  MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFR
        MSIPELPFSPSN          PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQR+VYL+SSGQV NQTDLH KLQTVLNSRSR HKSCFKFR
Subjt:  MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFR

Query:  VFWC
           C
Subjt:  VFWC

KAG6581370.1 hypothetical protein SDJN03_21372, partial [Cucurbita argyrosperma subsp. sororia]2.3e-4080Show/hide
Query:  MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSC-FKF
        MSIPELPFSPSN I+TS+   TP VQ+VSK+TSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLS+SG+VFNQ DLHRKL++VL+SR +R + C FKF
Subjt:  MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSC-FKF

Query:  RVFWCSVRKI
        RVFWCSVR+I
Subjt:  RVFWCSVRKI

KAG7026513.1 hypothetical protein SDJN02_10515, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-2680Show/hide
Query:  NTTPTPK-VQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNS-RSRRHKSCFKFR
        +TT TPK VQRV KSTSDRLLQKF DATEFGFDY+ SGLWSPPLQR+VYLSSSG+VFN TDL RKL+ VL+S RSRR  SCFKFR
Subjt:  NTTPTPK-VQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNS-RSRRHKSCFKFR

KAG7034657.1 hypothetical protein SDJN02_04387 [Cucurbita argyrosperma subsp. argyrosperma]1.1e-3479.21Show/hide
Query:  MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSC-FKF
        MSIPELPFSPSN I+TS+   TP VQ+VSK+TSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLS+SG+VFNQ DLHRKL++VL+SR +R + C FKF
Subjt:  MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSC-FKF

Query:  R
        R
Subjt:  R

XP_038892892.1 uncharacterized protein LOC120081796 [Benincasa hispida]2.8e-4691.59Show/hide
Query:  MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFR
        MSIP+LPFSPSN I+TSN   TPKVQRVSKSTSDRLLQKFFDATEFGFDYE SGLWSPPLQRSVYLSSSGQVFNQTDLH KLQTVLNSR RRHKSCFKFR
Subjt:  MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFR

Query:  VFWCSVR
        VFWCSVR
Subjt:  VFWCSVR

TrEMBL top hitse value%identityAlignment
A0A0A0KLQ8 Uncharacterized protein3.4e-4283.49Show/hide
Query:  MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFR
        MSIPELPFSPSN          PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQR+VYL+SSGQV NQTDLH KLQTVLNSRSR HKSCFKFR
Subjt:  MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFR

Query:  VFWCSVRKI
        VFWC V++I
Subjt:  VFWCSVRKI

A0A2I4H1I2 uncharacterized protein LOC109012687 isoform X18.2e-2051.82Show/hide
Query:  MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVL--NSRSRRHKS-CF
        MSIPE PFS S+   +   T + +V+ VSK  SDRL+QKF+D +EFGFDYE+SGLWSPP+QR+V++SSSG++F + D+  KL++ L  + R R+H+S CF
Subjt:  MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVL--NSRSRRHKS-CF

Query:  KFRVFWCSVR
           V    VR
Subjt:  KFRVFWCSVR

A0A314YAR0 Uncharacterized protein4.8e-2055.1Show/hide
Query:  SPSNLISTSNTTPT-PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCS
        SPS  +      PT P VQ V KSTSDRLLQKFFDA EF FDYE+SGLWSPP++R+V+LSS G++F + ++  KL T++++ + +HK+C   R FWCS
Subjt:  SPSNLISTSNTTPT-PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCS

A0A314ZRE6 Uncharacterized protein3.7e-2055.1Show/hide
Query:  SPSNLISTSNTTPT-PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCS
        SPS  +      PT P VQ V KSTSDRLLQKFFDA EF FDYE+SGLWSPP++R+V+LSS G++F + ++  KL T++++ + +HK+C   R FWCS
Subjt:  SPSNLISTSNTTPT-PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCS

A0A6P5SBA8 uncharacterized protein LOC110756101 isoform X14.8e-2055.1Show/hide
Query:  SPSNLISTSNTTPT-PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCS
        SPS  +      PT P VQ V KSTSDRLLQKFFDA EF FDYE+SGLWSPP++R+V+LSS G++F + ++  KL T++++ + +HK+C   R FWCS
Subjt:  SPSNLISTSNTTPT-PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTAATTTCCACTTCCAATACTACTCCTACTCCAAAGGTTCAGAGGGTATCCAAATCCACTTCAGACAGATTGCT
TCAGAAATTCTTCGATGCCACAGAATTTGGATTTGATTACGAGAGAAGTGGCCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATTTAAGCTCTTCAGGTCAAGTTTTCA
ATCAAACGGATTTGCATAGGAAACTTCAGACTGTGTTGAATTCTCGTAGTAGAAGACATAAAAGTTGTTTCAAATTCAGAGTGTTTTGGTGCTCTGTGAGGAAAATCTGA
mRNA sequenceShow/hide mRNA sequence
AAGAAAACACCTTTGTCTTCTTCAAACACTCATCCCTTTTCTTTTTTCTTTTTTCTTTTTTATTTTTATATATAAACATTATCTTAATCTCTCTTTCTCTCTCTCTCTCT
CTCTTCTTTTTCTTTTTCTTGGATTTCAAATTCAATTGGGTTCCAAATTCCCATCAATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTAATTTCCACTTCCAAT
ACTACTCCTACTCCAAAGGTTCAGAGGGTATCCAAATCCACTTCAGACAGATTGCTTCAGAAATTCTTCGATGCCACAGAATTTGGATTTGATTACGAGAGAAGTGGCCT
CTGGTCTCCCCCTCTTCAACGCAGTGTTTATTTAAGCTCTTCAGGTCAAGTTTTCAATCAAACGGATTTGCATAGGAAACTTCAGACTGTGTTGAATTCTCGTAGTAGAA
GACATAAAAGTTGTTTCAAATTCAGAGTGTTTTGGTGCTCTGTGAGGAAAATCTGAAAGCTGTCATCTTTAGTGCTAAGCTTCCAACTTTTTTTTTTCCCTTAATGGGAT
CGATGATAATGGAGTTTCACAGTCCCAGCCTAGAAAACAAAAGCAGAGGGGGGCCCTCAAGAAAAAGAAAAAGATCCACCCTATACAGTTCCTATTTTGTTTATTTTGTA
CAAGTTCAATAGTTGATATAACACATTATTGTTGCTAATCCAAAGTTCAAGGCCTATAACATGAATCTCTTTGAGCTGTTGACTAACACCATTTCTATTCTTTCTTTTCC
CCTGTGAATATGAAATTATTACATGTTTAATTTGAGTCTCATTACCCTTGAGTTATGTTTA
Protein sequenceShow/hide protein sequence
MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCSVRKI