; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G002490 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G002490
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L34
Genome locationchr01:2254320..2255602
RNA-Seq ExpressionLsi01G002490
SyntenyLsi01G002490
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000271 - Ribosomal protein L34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052628.1 50S ribosomal protein L34 [Cucumis melo var. makuwa]5.0e-5785.81Show/hide
Query:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA
        MAAISVLSSPWVS GAIAVRVPSASLVISTGSRG CSVSLNTANNTSARSGLLHC                LSLGLDWSSK+GVGQGKGR+LVVRAGKAA
Subjt:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA

Query:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_004134668.1 50S ribosomal protein L34, chloroplastic [Cucumis sativus]2.0e-6694.19Show/hide
Query:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA
        MAAISVLS+PWVSTGAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSK+GVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA

Query:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_008439748.1 PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo]3.7e-6896.13Show/hide
Query:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA
        MAAISVLSSPWVS GAIAVRVPSASLVISTGSRG CSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSK+GVGQGKGR+LVVRAGKAA
Subjt:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA

Query:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_022142342.1 50S ribosomal protein L34, chloroplastic [Momordica charantia]4.2e-6490.97Show/hide
Query:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA
        MAAISVLS+PWV +GA+AVRVPSASLVISTGSR CCSVSLNTANNTSARSGLL CSFLPSSSLSCSSSFSG SLGLDW+S+I VGQGKGR+LVVRAGKAA
Subjt:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA

Query:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRS KSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGKGA
Subjt:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

XP_038883793.1 50S ribosomal protein L34, chloroplastic [Benincasa hispida]8.2e-6896.13Show/hide
Query:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA
        MAAISVLSSPWVSTGA AVRVPSASLVISTG RGCCSVSLNTANNTSARSGLLHCSFL SSSLSCSSSFSGLSLGLDWSSKIGVGQGKGR+LVVRAGKAA
Subjt:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA

Query:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

TrEMBL top hitse value%identityAlignment
A0A0A0KI92 Uncharacterized protein9.7e-6794.19Show/hide
Query:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA
        MAAISVLS+PWVSTGAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSK+GVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA

Query:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A1S3AZG6 50S ribosomal protein L34, chloroplastic1.8e-6896.13Show/hide
Query:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA
        MAAISVLSSPWVS GAIAVRVPSASLVISTGSRG CSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSK+GVGQGKGR+LVVRAGKAA
Subjt:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA

Query:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A5A7UBQ8 50S ribosomal protein L342.4e-5785.81Show/hide
Query:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA
        MAAISVLSSPWVS GAIAVRVPSASLVISTGSRG CSVSLNTANNTSARSGLLHC                LSLGLDWSSK+GVGQGKGR+LVVRAGKAA
Subjt:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA

Query:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A5D3CSJ7 50S ribosomal protein L341.8e-6896.13Show/hide
Query:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA
        MAAISVLSSPWVS GAIAVRVPSASLVISTGSRG CSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSK+GVGQGKGR+LVVRAGKAA
Subjt:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA

Query:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRS KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK A
Subjt:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

A0A6J1CMH5 50S ribosomal protein L34, chloroplastic2.0e-6490.97Show/hide
Query:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA
        MAAISVLS+PWV +GA+AVRVPSASLVISTGSR CCSVSLNTANNTSARSGLL CSFLPSSSLSCSSSFSG SLGLDW+S+I VGQGKGR+LVVRAGKAA
Subjt:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAA

Query:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKRNRS KSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGKGA
Subjt:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

SwissProt top hitse value%identityAlignment
P82244 50S ribosomal protein L34, chloroplastic1.6e-3465.38Show/hide
Query:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFL-PSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKA
        MA +S+LS+      AI  R PSASL   TGSR   +    + N  SARSG LHCSFL PSSSL  SS+FSGLSLGLD +S  GV   + R  VVRAGKA
Subjt:  MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFL-PSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKA

Query:  ALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        ALC TKR+RS KSLARTHGFR RM TT+GRA+LKRRRAKGRK+LCTK+NPSSGK A
Subjt:  ALCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

Q04CX6 50S ribosomal protein L346.6e-0472.73Show/hide
Query:  KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVL
        + L R HGFR+RM T NGR VL RRRAKGRKVL
Subjt:  KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVL

Q1I2H1 50S ribosomal protein L346.6e-0483.33Show/hide
Query:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL
        ARTHGFR RM T NGRAVL RRRAKGRK L
Subjt:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL

Q48BE9 50S ribosomal protein L346.6e-0483.33Show/hide
Query:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL
        ARTHGFR RM T NGRAVL RRRAKGRK L
Subjt:  ARTHGFRRRMRTTNGRAVLKRRRAKGRKVL

Q9LP37 50S ribosomal protein L34, chloroplastic7.0e-3061.94Show/hide
Query:  AAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKI-GVGQGKGRTLVVRAGKAA
        +A S L +P  S G I   VPSASL + TG R   S     +  +SA S LLHCSFL SS +S +S FSGLS+  D SS+  G+   + R LVVRAGKAA
Subjt:  AAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKI-GVGQGKGRTLVVRAGKAA

Query:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKR+RS KSLARTHGFRRRMRTT+GRA +KRRRAKGR  LC KSNPSSGK A
Subjt:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA

Arabidopsis top hitse value%identityAlignment
AT1G29070.1 Ribosomal protein L345.0e-3161.94Show/hide
Query:  AAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKI-GVGQGKGRTLVVRAGKAA
        +A S L +P  S G I   VPSASL + TG R   S     +  +SA S LLHCSFL SS +S +S FSGLS+  D SS+  G+   + R LVVRAGKAA
Subjt:  AAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKI-GVGQGKGRTLVVRAGKAA

Query:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA
        LCQTKR+RS KSLARTHGFRRRMRTT+GRA +KRRRAKGR  LC KSNPSSGK A
Subjt:  LCQTKRNRSCKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCGATATCAGTATTATCGTCCCCATGGGTTTCCACCGGAGCCATTGCCGTCCGCGTTCCCTCCGCTTCTCTTGTAATCTCCACTGGTTCTAGAGGTTGCTGCTC
CGTATCTCTGAATACCGCCAACAACACTTCCGCCCGTTCTGGACTGCTCCATTGTTCATTTCTTCCATCTTCCTCCCTCTCGTGCTCTTCATCTTTTTCAGGTTTATCTT
TGGGTTTGGATTGGAGCTCTAAGATTGGGGTCGGACAAGGGAAGGGTAGGACCTTAGTGGTTAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCTTGT
AAATCCTTAGCTCGGACTCATGGTTTTCGCAGACGAATGCGAACCACCAATGGCAGAGCTGTTCTAAAGCGCAGACGTGCCAAGGGTAGGAAGGTCCTCTGCACAAAGTC
CAACCCAAGTAGCGGAAAGGGTGCTTAA
mRNA sequenceShow/hide mRNA sequence
TGATGGCCCAAGTGGATGCCTTGATCTAAAAACCCGACCCGATTAAGTTCAGCAACATCAGGATAAGGCTCCTTCATCCTCCCGCTACTAGAATTAGCAGAAGGGGGAAA
CTGACAGTCTAACAATGGCAGCGATATCAGTATTATCGTCCCCATGGGTTTCCACCGGAGCCATTGCCGTCCGCGTTCCCTCCGCTTCTCTTGTAATCTCCACTGGTTCT
AGAGGTTGCTGCTCCGTATCTCTGAATACCGCCAACAACACTTCCGCCCGTTCTGGACTGCTCCATTGTTCATTTCTTCCATCTTCCTCCCTCTCGTGCTCTTCATCTTT
TTCAGGTTTATCTTTGGGTTTGGATTGGAGCTCTAAGATTGGGGTCGGACAAGGGAAGGGTAGGACCTTAGTGGTTAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAA
GAAACAGGTCTTGTAAATCCTTAGCTCGGACTCATGGTTTTCGCAGACGAATGCGAACCACCAATGGCAGAGCTGTTCTAAAGCGCAGACGTGCCAAGGGTAGGAAGGTC
CTCTGCACAAAGTCCAACCCAAGTAGCGGAAAGGGTGCTTAAGTTTTTCTCGCTTTAACCATTTGTAGGTAAATTGGGCAATGTTGTCTAATTAACTCTTCGGATGATTG
GTCAAGGTAGTTCACTATATTACATGATGCTTTGTTATTGATTCATTTTAAAGTTTCTTAATTGTCAATGTTAAATTCAAATGCCTGGACGAGACTAGCTTTTGTGATGA
TGCTTTCGTCTTGTTCATTTGAAAATTTCCTCTGAACTGAAATATGCACATCTTCTTAAAACCTGAGGTTTGTTGTTACTAACCTAACT
Protein sequenceShow/hide protein sequence
MAAISVLSSPWVSTGAIAVRVPSASLVISTGSRGCCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKIGVGQGKGRTLVVRAGKAALCQTKRNRSC
KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKGA