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Lsi01G002560 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G002560
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr01:2308012..2310710
RNA-Seq ExpressionLsi01G002560
SyntenyLsi01G002560
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2615158.1 unnamed protein product [Spirodela intermedia]6.7e-0643.18Show/hide
Query:  LPSLTKPALLHAFKTPMNVTLTGASGAR-------------PCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVPREAV
        +P  T+PA + A +TPM VT  G +  R             P  ASP++ T Q+  SFSGI SN  L S++ PHLAYMS  A+PR+ V
Subjt:  LPSLTKPALLHAFKTPMNVTLTGASGAR-------------PCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVPREAV

CAA2632815.1 unnamed protein product [Spirodela intermedia]6.7e-0648.81Show/hide
Query:  LPSLTKPALLHAFKTPMNVTLTG-------------ASGARPCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVP
        LPS T PA   A  TP+ V   G             AS  RPC ASPQII  Q     SGIL N  L    HP LAYMSTSAVP
Subjt:  LPSLTKPALLHAFKTPMNVTLTG-------------ASGARPCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVP

CAA7409143.1 unnamed protein product [Spirodela intermedia]6.7e-0648.81Show/hide
Query:  LPSLTKPALLHAFKTPMNVTLTG-------------ASGARPCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVP
        LPS T PA   A  TP+ V   G             AS  RPC ASPQII  Q     SGIL N  L    HP LAYMSTSAVP
Subjt:  LPSLTKPALLHAFKTPMNVTLTG-------------ASGARPCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVP

KAF7806299.1 basic leucine zipper 43-like [Senna tora]3.7e-0443.9Show/hide
Query:  PSLTKPALLHAFKTPMNVTLTG-----------ASGARPCD--ASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAV
        PS+TKPA LHA K+P+NV  +G           +  +RPC     P IITF D  SFS  LS +  DSS+ P  AYMS   +
Subjt:  PSLTKPALLHAFKTPMNVTLTG-----------ASGARPCD--ASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAV

TrEMBL top hitse value%identityAlignment
A0A0A9G1U2 Uncharacterized protein1.8e-0438Show/hide
Query:  PYVSVISLKKRLPSLTKPALLHAFKTPMNVTLTG-------------ASGARPCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVPREAVI
        PY   +  K   P  TKPA +HA   PM    +G             AS   PC A P I+  Q     S I SN  + S   PHL YMST AVP+  VI
Subjt:  PYVSVISLKKRLPSLTKPALLHAFKTPMNVTLTG-------------ASGARPCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVPREAVI

A0A7I8IC34 Hypothetical protein3.2e-0643.18Show/hide
Query:  LPSLTKPALLHAFKTPMNVTLTGASGAR-------------PCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVPREAV
        +P  T+PA + A +TPM VT  G +  R             P  ASP++ T Q+  SFSGI SN  L S++ PHLAYMS  A+PR+ V
Subjt:  LPSLTKPALLHAFKTPMNVTLTGASGAR-------------PCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVPREAV

A0A7I8JP89 Hypothetical protein3.2e-0648.81Show/hide
Query:  LPSLTKPALLHAFKTPMNVTLTG-------------ASGARPCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVP
        LPS T PA   A  TP+ V   G             AS  RPC ASPQII  Q     SGIL N  L    HP LAYMSTSAVP
Subjt:  LPSLTKPALLHAFKTPMNVTLTG-------------ASGARPCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVP

A0A7I8LGH7 Hypothetical protein3.2e-0648.81Show/hide
Query:  LPSLTKPALLHAFKTPMNVTLTG-------------ASGARPCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVP
        LPS T PA   A  TP+ V   G             AS  RPC ASPQII  Q     SGIL N  L    HP LAYMSTSAVP
Subjt:  LPSLTKPALLHAFKTPMNVTLTG-------------ASGARPCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTCCCCAACTTGTGTCACCAGTAAGCCAAAAGCAATGGCCAACCTTTCACTGTGCTCTTTAATGGCAGTTTCTTTTTCTTCTTCCTCAATGTCATGCAGAACTGA
TGAAACATTTGCTGTGTATCCTGCTGCTGCTATTCTTACTCCAATTATCTCCAACATCTTTAGATCGCTCATGCTCCTTATCTCCGGCGACAAATCGGTGAACTCTTCCT
TCTGCTTCAATCAAGCTCCAGCCTGCAATTTTTCTGGCGAAGATACTAGCCAACTGGACATAATGCCCATTGTGAGTGGGATCCATTTGAATCAAGTTGCTCCCAATCTC
TTCACCCAGTTCTATAAATCCGTGAACCTTGCAAGAACCAAGCACCGTTGCCCACAGGACAGGGTCCGGAGGAGCAGGCATCCTTGTTCCATCTCTGGTTCAAGGCCATA
TGTGTCCGTCATTAGCTTAAAGAAGCGTCTTCCCTCGCTGACTAAACCAGCTCTGCTACACGCATTCAAGACTCCAATGAATGTCACGTTGACTGGCGCTTCTGGCGCAA
GGCCATGCGATGCTAGCCCACAAATCATAACATTCCAAGACCATTTATCCTTCTCAGGCATTCTGTCAAACAAGAATCTGGACTCATCAATACATCCGCACTTAGCATAC
ATGTCAACTAGTGCTGTGCCAAGAGAAGCAGTCATTGGGAATCTTAACGAGTCTGCAATAGAATGGATCATTTTCCCATACTCAAGCATACCAAGCTGGGCTGCTGCTGC
GAGCAAGGACACCAATATTGCCTCATTCGGTCTCATTTTTTGCTCTCCCATCTCTTTGAAGAACTTCATCAAACACCTGTTTCGCAGATTCAACTCTGCAACAAGTACAA
TACAAGTGAATCAACGCATTTCGGATGAAAACGTCTTTGACAAAACCAAGTTTAATCACATGGGTTTGAACTTGAACCCCTTCGCGGATGGCCAAAGCGTTACTACAAGC
TTGCAACATAAAGGTGAGAGTATGTTTATTAGGCGCCGCCAGAAAACTTCGGCGCATGCGCGAGTAAAGAGAAATGGACTCGAGAGAGGAAGAAATGGCAAGAAAAGCGA
GGAGGTGAGCCGTGATGCGTCCATCGTCAGCAAGGCCAAAGACGACAGTACGGGCATGGGCTTGCTTAATTTGGCTGATCCCAGGTGTTGGTGGAAGACAAGAAAGAGGC
GGAGCATAAAGAAGGATCCGTCGCAAATTCTGAAGTTTTTATTGGATTTGATTGCGGCAATAACAGCTCCTGGTCCTATAGATTACATTTTCTCAGGCATTTCATCGAAC
ATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATTCCCCAACTTGTGTCACCAGTAAGCCAAAAGCAATGGCCAACCTTTCACTGTGCTCTTTAATGGCAGTTTCTTTTTCTTCTTCCTCAATGTCATGCAGAACTGA
TGAAACATTTGCTGTGTATCCTGCTGCTGCTATTCTTACTCCAATTATCTCCAACATCTTTAGATCGCTCATGCTCCTTATCTCCGGCGACAAATCGGTGAACTCTTCCT
TCTGCTTCAATCAAGCTCCAGCCTGCAATTTTTCTGGCGAAGATACTAGCCAACTGGACATAATGCCCATTGTGAGTGGGATCCATTTGAATCAAGTTGCTCCCAATCTC
TTCACCCAGTTCTATAAATCCGTGAACCTTGCAAGAACCAAGCACCGTTGCCCACAGGACAGGGTCCGGAGGAGCAGGCATCCTTGTTCCATCTCTGGTTCAAGGCCATA
TGTGTCCGTCATTAGCTTAAAGAAGCGTCTTCCCTCGCTGACTAAACCAGCTCTGCTACACGCATTCAAGACTCCAATGAATGTCACGTTGACTGGCGCTTCTGGCGCAA
GGCCATGCGATGCTAGCCCACAAATCATAACATTCCAAGACCATTTATCCTTCTCAGGCATTCTGTCAAACAAGAATCTGGACTCATCAATACATCCGCACTTAGCATAC
ATGTCAACTAGTGCTGTGCCAAGAGAAGCAGTCATTGGGAATCTTAACGAGTCTGCAATAGAATGGATCATTTTCCCATACTCAAGCATACCAAGCTGGGCTGCTGCTGC
GAGCAAGGACACCAATATTGCCTCATTCGGTCTCATTTTTTGCTCTCCCATCTCTTTGAAGAACTTCATCAAACACCTGTTTCGCAGATTCAACTCTGCAACAAGTACAA
TACAAGTGAATCAACGCATTTCGGATGAAAACGTCTTTGACAAAACCAAGTTTAATCACATGGGTTTGAACTTGAACCCCTTCGCGGATGGCCAAAGCGTTACTACAAGC
TTGCAACATAAAGGTGAGAGTATGTTTATTAGGCGCCGCCAGAAAACTTCGGCGCATGCGCGAGTAAAGAGAAATGGACTCGAGAGAGGAAGAAATGGCAAGAAAAGCGA
GGAGGTGAGCCGTGATGCGTCCATCGTCAGCAAGGCCAAAGACGACAGTACGGGCATGGGCTTGCTTAATTTGGCTGATCCCAGGTGTTGGTGGAAGACAAGAAAGAGGC
GGAGCATAAAGAAGGATCCGTCGCAAATTCTGAAGTTTTTATTGGATTTGATTGCGGCAATAACAGCTCCTGGTCCTATAGATTACATTTTCTCAGGCATTTCATCGAAC
ATCTGA
Protein sequenceShow/hide protein sequence
MYSPTCVTSKPKAMANLSLCSLMAVSFSSSSMSCRTDETFAVYPAAAILTPIISNIFRSLMLLISGDKSVNSSFCFNQAPACNFSGEDTSQLDIMPIVSGIHLNQVAPNL
FTQFYKSVNLARTKHRCPQDRVRRSRHPCSISGSRPYVSVISLKKRLPSLTKPALLHAFKTPMNVTLTGASGARPCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAY
MSTSAVPREAVIGNLNESAIEWIIFPYSSIPSWAAAASKDTNIASFGLIFCSPISLKNFIKHLFRRFNSATSTIQVNQRISDENVFDKTKFNHMGLNLNPFADGQSVTTS
LQHKGESMFIRRRQKTSAHARVKRNGLERGRNGKKSEEVSRDASIVSKAKDDSTGMGLLNLADPRCWWKTRKRRSIKKDPSQILKFLLDLIAAITAPGPIDYIFSGISSN
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