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Lsi01G002960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G002960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3
Genome locationchr01:2635793..2637425
RNA-Seq ExpressionLsi01G002960
SyntenyLsi01G002960
Gene Ontology termsNA
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038880785.1 protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X1 [Benincasa hispida]4.3e-3895.79Show/hide
Query:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE
        MSSAAAMAARSAFRSTLARAPISARLTNGAK+KS  SPF IPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE
Subjt:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE

XP_038880789.1 protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X2 [Benincasa hispida]4.3e-3895.79Show/hide
Query:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE
        MSSAAAMAARSAFRSTLARAPISARLTNGAK+KS  SPF IPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE
Subjt:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE

XP_038880790.1 protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X3 [Benincasa hispida]4.3e-3895.79Show/hide
Query:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE
        MSSAAAMAARSAFRSTLARAPISARLTNGAK+KS  SPF IPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE
Subjt:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE

XP_038880792.1 protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X4 [Benincasa hispida]4.3e-3895.79Show/hide
Query:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE
        MSSAAAMAARSAFRSTLARAPISARLTNGAK+KS  SPF IPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE
Subjt:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE

XP_038880793.1 protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X5 [Benincasa hispida]4.3e-3895.79Show/hide
Query:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE
        MSSAAAMAARSAFRSTLARAPISARLTNGAK+KS  SPF IPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE
Subjt:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE

TrEMBL top hitse value%identityAlignment
A0A0A0KHP8 Uncharacterized protein2.0e-4148.09Show/hide
Query:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPEALGVF
        MSSAAAMAARSAFRSTLARAPIS R T+ AK KS  SPF IPKQNPLSQSHRILRSPVELSCC+ESLLPYHSATASALLTSMLSVSRRSYGWTPE     
Subjt:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPEALGVF

Query:  EMWSSEMFIENLKEQICSARRYYLSSKHQRCSDLVIPHLYVENVYLCSIYPLDPYGLDQYDILVPCFVVKELEFTCDNLSLSSLNALWYYRLAITIIMSQ
                                      C +L + H                              + ++E   ++ + S+                 
Subjt:  EMWSSEMFIENLKEQICSARRYYLSSKHQRCSDLVIPHLYVENVYLCSIYPLDPYGLDQYDILVPCFVVKELEFTCDNLSLSSLNALWYYRLAITIIMSQ

Query:  LCEEGQVMYEFSFFFLFIDGINFSNMTSMILICSTAQIAMMMYDECRMVRALALKRQDAEIK
                               SN TSMILI ST QIAMMMYDE RMVRALALKRQDAEIK
Subjt:  LCEEGQVMYEFSFFFLFIDGINFSNMTSMILICSTAQIAMMMYDECRMVRALALKRQDAEIK

A0A6J1EE22 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X43.0e-3793.68Show/hide
Query:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE
        MSSAAAMAARSAFRSTLARA IS RLTNGAKVKSP+SPF IPKQNPLSQSHRILRSPVE+SCCVESLLPYHSATASALLTSMLSVSRRSYGWT E
Subjt:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE

A0A6J1IM12 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X13.0e-3793.68Show/hide
Query:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE
        MSSAAAMAARSAFRSTLARA IS RLTNGAKVKSP+SPF IPKQNPLSQSHRILRSPVE+SCCVESLLPYHSATASALLTSMLSVSRRSYGWT E
Subjt:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE

A0A6J1IR78 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X33.0e-3793.68Show/hide
Query:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE
        MSSAAAMAARSAFRSTLARA IS RLTNGAKVKSP+SPF IPKQNPLSQSHRILRSPVE+SCCVESLLPYHSATASALLTSMLSVSRRSYGWT E
Subjt:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE

A0A6J1IUA2 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X43.0e-3793.68Show/hide
Query:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE
        MSSAAAMAARSAFRSTLARA IS RLTNGAKVKSP+SPF IPKQNPLSQSHRILRSPVE+SCCVESLLPYHSATASALLTSMLSVSRRSYGWT E
Subjt:  MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPE

SwissProt top hitse value%identityAlignment
Q93ZJ3 Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial1.2e-0945.83Show/hide
Query:  SSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPF-GIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPEA
        +SA    ARS  R+  +R+  ++     ++ KS    F    +++PL      LR+PVELS CVESLLPYHSATASAL+TS LS+S ++YGW  +A
Subjt:  SSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPF-GIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPEA

Arabidopsis top hitse value%identityAlignment
AT1G28395.1 unknown protein1.0e-1659.14Show/hide
Query:  AARSAFRSTLARAPISA-RLTNGAK--VKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPEAL
        AARS FRS  +RA  +A R + G K    S  + F +PKQ+PL  ++RI RSPVELSCCVE++LPYH+ATASALL SMLSVSRR  GW  + L
Subjt:  AARSAFRSTLARAPISA-RLTNGAK--VKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPEAL

AT1G28395.2 unknown protein1.0e-1659.14Show/hide
Query:  AARSAFRSTLARAPISA-RLTNGAK--VKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPEAL
        AARS FRS  +RA  +A R + G K    S  + F +PKQ+PL  ++RI RSPVELSCCVE++LPYH+ATASALL SMLSVSRR  GW  + L
Subjt:  AARSAFRSTLARAPISA-RLTNGAK--VKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPEAL

AT1G28395.3 unknown protein1.0e-1659.14Show/hide
Query:  AARSAFRSTLARAPISA-RLTNGAK--VKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPEAL
        AARS FRS  +RA  +A R + G K    S  + F +PKQ+PL  ++RI RSPVELSCCVE++LPYH+ATASALL SMLSVSRR  GW  + L
Subjt:  AARSAFRSTLARAPISA-RLTNGAK--VKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPEAL

AT2G33847.1 unknown protein2.4e-1862.79Show/hide
Query:  AARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWT
        AARS FRS + RA ++A  +      S  S F +PKQ+PL  SHRI RSPVELSCCVE++LPYH+ATASALL SMLSVS RS  WT
Subjt:  AARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWT

AT2G33847.2 unknown protein2.4e-1862.79Show/hide
Query:  AARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWT
        AARS FRS + RA ++A  +      S  S F +PKQ+PL  SHRI RSPVELSCCVE++LPYH+ATASALL SMLSVS RS  WT
Subjt:  AARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTCCGCCGCTGCCATGGCTGCTAGGTCAGCCTTCAGATCAACCCTAGCCCGAGCCCCTATCTCCGCCAGACTTACCAACGGTGCCAAAGTCAAATCACCCTCATC
TCCCTTCGGCATCCCCAAGCAGAACCCACTCTCCCAATCCCATCGCATTTTGAGGTCTCCTGTTGAGTTGAGTTGCTGTGTGGAATCGTTGCTTCCTTACCACTCTGCTA
CTGCCTCTGCATTGCTTACTTCTATGCTTTCAGTCTCTCGTCGAAGCTACGGTTGGACTCCTGAAGCTCTGGGTGTGTTCGAAATGTGGTCGAGTGAAATGTTCATTGAG
AATTTGAAAGAACAAATTTGTTCGGCAAGACGATACTATTTGAGCTCTAAGCATCAACGATGTTCAGATCTTGTTATTCCGCATCTTTATGTGGAAAATGTTTATTTATG
TTCTATTTATCCATTGGATCCTTACGGCTTAGACCAATATGATATTCTGGTTCCATGTTTTGTTGTCAAAGAATTAGAATTCACTTGTGATAATTTAAGTCTTTCTTCTC
TTAATGCTCTATGGTATTACCGTCTAGCCATCACCATAATAATGAGTCAGCTGTGTGAAGAAGGTCAGGTTATGTATGAATTTTCTTTTTTCTTTTTGTTCATTGATGGC
ATTAATTTTAGTAATATGACAAGTATGATATTGATTTGTTCTACCGCTCAGATTGCAATGATGATGTATGATGAATGTCGGATGGTTCGAGCACTTGCCCTCAAAAGACA
AGATGCTGAAATAAAGTCATGTATTGCTTGTTTTTCGTGTTCAAGTAGTTCAGTGACATTGGGTTTTTATAGCAGTAGGAAGAAACAAACTCATAACTGA
mRNA sequenceShow/hide mRNA sequence
CAAGGTTCTGATTATGTTCGTACGGTACAAGCGCGCACACAGGAATACCTAACGCTAAAGCAAAGGGCTAAAACCTTAAGAAAACCCCAAGAACGAAATCTCCAAATTCC
TTTGCCAAATCCCTGAACCATGTCCTCCGCCGCTGCCATGGCTGCTAGGTCAGCCTTCAGATCAACCCTAGCCCGAGCCCCTATCTCCGCCAGACTTACCAACGGTGCCA
AAGTCAAATCACCCTCATCTCCCTTCGGCATCCCCAAGCAGAACCCACTCTCCCAATCCCATCGCATTTTGAGGTCTCCTGTTGAGTTGAGTTGCTGTGTGGAATCGTTG
CTTCCTTACCACTCTGCTACTGCCTCTGCATTGCTTACTTCTATGCTTTCAGTCTCTCGTCGAAGCTACGGTTGGACTCCTGAAGCTCTGGGTGTGTTCGAAATGTGGTC
GAGTGAAATGTTCATTGAGAATTTGAAAGAACAAATTTGTTCGGCAAGACGATACTATTTGAGCTCTAAGCATCAACGATGTTCAGATCTTGTTATTCCGCATCTTTATG
TGGAAAATGTTTATTTATGTTCTATTTATCCATTGGATCCTTACGGCTTAGACCAATATGATATTCTGGTTCCATGTTTTGTTGTCAAAGAATTAGAATTCACTTGTGAT
AATTTAAGTCTTTCTTCTCTTAATGCTCTATGGTATTACCGTCTAGCCATCACCATAATAATGAGTCAGCTGTGTGAAGAAGGTCAGGTTATGTATGAATTTTCTTTTTT
CTTTTTGTTCATTGATGGCATTAATTTTAGTAATATGACAAGTATGATATTGATTTGTTCTACCGCTCAGATTGCAATGATGATGTATGATGAATGTCGGATGGTTCGAG
CACTTGCCCTCAAAAGACAAGATGCTGAAATAAAGTCATGTATTGCTTGTTTTTCGTGTTCAAGTAGTTCAGTGACATTGGGTTTTTATAGCAGTAGGAAGAAACAAACT
CATAACTGA
Protein sequenceShow/hide protein sequence
MSSAAAMAARSAFRSTLARAPISARLTNGAKVKSPSSPFGIPKQNPLSQSHRILRSPVELSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPEALGVFEMWSSEMFIE
NLKEQICSARRYYLSSKHQRCSDLVIPHLYVENVYLCSIYPLDPYGLDQYDILVPCFVVKELEFTCDNLSLSSLNALWYYRLAITIIMSQLCEEGQVMYEFSFFFLFIDG
INFSNMTSMILICSTAQIAMMMYDECRMVRALALKRQDAEIKSCIACFSCSSSSVTLGFYSSRKKQTHN