CuGenDBv2

Gene ID	Lsi01G003210
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DUF1771 domain-containing protein
Genome location	chr01:2834504..2836399
RNA-Seq Expression	Lsi01G003210
Synteny	Lsi01G003210
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function) GO:0051536 - iron-sulfur cluster binding (molecular function) GO:0097573 - glutathione oxidoreductase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004134709.1 putative nuclear RNA export factor SDE5 [Cucumis sativus]

5.9e-22

70.97

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Query:  ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGM-GHESDVGGYEAVGERVDRVDRGR
        ADTEDDE+LLDLHDLGGKEAV VLKSQISSLSGIPSIKHLKVIMEADDK+TSKRSCRRL    L KE +   E + G Y  +   +D +DR R
Subjt:  ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGM-GHESDVGGYEAVGERVDRVDRGR

XP_008439864.1 PREDICTED: putative nuclear RNA export factor SDE5 isoform X1 [Cucumis melo]

4.5e-22

70.97

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Query:  ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGM-GHESDVGGYEAVGERVDRVDRGR
        ADTEDDE+LLDLHDLGGKEAV VLKSQISSLSGIPSIKHLKVIMEADDK+TSKRSCRRL    L KE +   E + G Y  +   +D +DR R
Subjt:  ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGM-GHESDVGGYEAVGERVDRVDRGR

XP_008439868.1 PREDICTED: putative nuclear RNA export factor SDE5 isoform X2 [Cucumis melo]

4.5e-22

70.97

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Query:  ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGM-GHESDVGGYEAVGERVDRVDRGR
        ADTEDDE+LLDLHDLGGKEAV VLKSQISSLSGIPSIKHLKVIMEADDK+TSKRSCRRL    L KE +   E + G Y  +   +D +DR R
Subjt:  ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGM-GHESDVGGYEAVGERVDRVDRGR

XP_023003172.1 putative nuclear RNA export factor SDE5 [Cucurbita maxima]

7.8e-22

69.23

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Query:  DADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGMGHESDVGGYEAVGERVDRVDR
        +ADTEDDE+LLDLHD+GGKEAV VLKSQISSLSGIPSIKHLKVI EADDKDTSKRSCRRL    L KE +    +  G  ++  R+D +DR
Subjt:  DADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGMGHESDVGGYEAVGERVDRVDR

XP_038881794.1 putative nuclear RNA export factor SDE5 [Benincasa hispida]

2.9e-21

68.82

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Query:  DADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGMGHESDVGGYEAVGERVDRVDRGR
        +ADTE+DEILLDL+DLGG+EAVSVLKSQISSLSGIPSIKHLKV MEADDKDTSKRSCRRL    L KE +    +  G  ++  R+D +DR R
Subjt:  DADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGMGHESDVGGYEAVGERVDRVDRGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KNB3 DUF1771 domain-containing protein

2.9e-22

70.97

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Query:  ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGM-GHESDVGGYEAVGERVDRVDRGR
        ADTEDDE+LLDLHDLGGKEAV VLKSQISSLSGIPSIKHLKVIMEADDK+TSKRSCRRL    L KE +   E + G Y  +   +D +DR R
Subjt:  ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGM-GHESDVGGYEAVGERVDRVDRGR

A0A1S3AZR4 putative nuclear RNA export factor SDE5 isoform X2

2.2e-22

70.97

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Query:  ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGM-GHESDVGGYEAVGERVDRVDRGR
        ADTEDDE+LLDLHDLGGKEAV VLKSQISSLSGIPSIKHLKVIMEADDK+TSKRSCRRL    L KE +   E + G Y  +   +D +DR R
Subjt:  ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGM-GHESDVGGYEAVGERVDRVDRGR

A0A1S3B0H0 putative nuclear RNA export factor SDE5 isoform X1

2.2e-22

70.97

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Query:  ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGM-GHESDVGGYEAVGERVDRVDRGR
        ADTEDDE+LLDLHDLGGKEAV VLKSQISSLSGIPSIKHLKVIMEADDK+TSKRSCRRL    L KE +   E + G Y  +   +D +DR R
Subjt:  ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGM-GHESDVGGYEAVGERVDRVDRGR

A0A6J1CL01 putative nuclear RNA export factor SDE5 isoform X1

2.4e-21

69.57

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Query:  DADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGM-GHESDVGGYEAVGERVDRVDR
        +ADTEDDEILLDLH+LGG+EAVSVLKSQISSLS IPSIKHLKVI+EA+DKDTSKRSCRRL    L KE +   E + GG+  +  R+D +DR
Subjt:  DADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGM-GHESDVGGYEAVGERVDRVDR

A0A6J1KLP7 putative nuclear RNA export factor SDE5

3.8e-22

69.23

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Query:  DADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGMGHESDVGGYEAVGERVDRVDR
        +ADTEDDE+LLDLHD+GGKEAV VLKSQISSLSGIPSIKHLKVI EADDKDTSKRSCRRL    L KE +    +  G  ++  R+D +DR
Subjt:  DADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL---FLVKEGMGHESDVGGYEAVGERVDRVDR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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mRNA sequence

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ATGGGAGATGCAGATACTGAAGACGATGAAATATTGCTTGATTTGCATGACCTTGGTGGCAAGGAGGCAGTGAGCGTTTTAAAATCTCAAATTTCTTCACTCTCCGGAAT
CCCATCAATTAAACATCTTAAAGTAATCATGGAGGCAGATGATAAAGATACCTCAAAGCGGTCTTGTAGACGTTTGTTTTTGGTCAAGGAGGGGATGGGACATGAGAGTG
ATGTTGGAGGTTATGAAGCTGTTGGAGAAAGAGTCGATCGAGTGGACCGAGGAAGAAAATGGCGGTTCCATTCTAATTCGCTTGGATACTATTGATCGAAAACGGTTAAG
TTTCATCAAAAGAATGCATTGAGAACAAATGGGCAACAAAAAGAACAAAAAAATGAATAGGATAATTTATATGCATCACGGGAGAAGACCTATACATTTGTGTTTTTTGA
ATCTACATCCACGGCCCCAAGTGTTTGTTTTGGTGGATGGAGCTCGAGATTTGAGGCCACATCATTGGGGAGAAACCTTGAAGAAAATGAAAGTTTGCATTTTTTGAAAT
CGCTTAATACAACGAATTTTTGTAAACTGTAAAGTTGTGCATCTTTGAGATGAGCTTTTAGGTTACATATTATCAGGTTATAGAAATATTTTTGAAAAACACACCAAAAA
AGTCCAACCAAACTCTCCCTATCATATAGTGCTTTGTTATTTTTTCTTCCTTTTAAATTAGAGATTGTCATATGATGATGAATTAGAAAAGAGTATGAATGTATTTTGAA
CTCGACCGCTTGGTTGAGAATGATTTAATCAAATGTGTTATCTGGGTATGATTTAATCTTTAAA

Protein sequence

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MGDADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRLFLVKEGMGHESDVGGYEAVGERVDRVDRGRKWRFHSNSLGYY

Lsi01G003210 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome