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Lsi01G003380 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G003380
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr01:2967563..2975068
RNA-Seq ExpressionLsi01G003380
SyntenyLsi01G003380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052708.1 hypothetical protein E6C27_scaffold120G003210 [Cucumis melo var. makuwa]4.0e-3393.24Show/hide
Query:  CDSFWVFEEDYKGFTDTETNINSCNLRFVQECQNQNNKRRFTFLYTGGTRNEKGQSVIFWPSNEAAQFLLSLYD
        CDSFWVFEEDYKGFTD ETN NSCNL+FVQECQNQNNKRRFTFLYTGG RNEKGQSVIFWPSNEAAQF+LSLYD
Subjt:  CDSFWVFEEDYKGFTDTETNINSCNLRFVQECQNQNNKRRFTFLYTGGTRNEKGQSVIFWPSNEAAQFLLSLYD
KGN49203.1 hypothetical protein Csa_002915 [Cucumis sativus]2.6e-0887.5Show/hide
Query:  LLSLYDYRPFLLGVMLECSNSINYSDKDRE--GEGEGERE
        +LSLYD RPFLLGVMLECSNSINYSDKDRE  GEG+GERE
Subjt:  LLSLYDYRPFLLGVMLECSNSINYSDKDRE--GEGEGERE
KGN49204.1 hypothetical protein Csa_003775 [Cucumis sativus]4.9e-0778.26Show/hide
Query:  RAGIFLLSVAARIILELELLLASVLDGFLHCSSHPPEQFPELLPTV
        R+G    SVAARIIL+ ELLLASVLDGFLH SSHPPEQF ELL TV
Subjt:  RAGIFLLSVAARIILELELLLASVLDGFLHCSSHPPEQFPELLPTV
TrEMBL top hitse value%identityAlignment
A0A0A0KI11 Uncharacterized protein1.3e-0887.5Show/hide
Query:  LLSLYDYRPFLLGVMLECSNSINYSDKDRE--GEGEGERE
        +LSLYD RPFLLGVMLECSNSINYSDKDRE  GEG+GERE
Subjt:  LLSLYDYRPFLLGVMLECSNSINYSDKDRE--GEGEGERE
A0A0A0KK41 Uncharacterized protein2.4e-0778.26Show/hide
Query:  RAGIFLLSVAARIILELELLLASVLDGFLHCSSHPPEQFPELLPTV
        R+G    SVAARIIL+ ELLLASVLDGFLH SSHPPEQF ELL TV
Subjt:  RAGIFLLSVAARIILELELLLASVLDGFLHCSSHPPEQFPELLPTV
A0A5D3CRT7 Uncharacterized protein1.9e-3393.24Show/hide
Query:  CDSFWVFEEDYKGFTDTETNINSCNLRFVQECQNQNNKRRFTFLYTGGTRNEKGQSVIFWPSNEAAQFLLSLYD
        CDSFWVFEEDYKGFTD ETN NSCNL+FVQECQNQNNKRRFTFLYTGG RNEKGQSVIFWPSNEAAQF+LSLYD
Subjt:  CDSFWVFEEDYKGFTDTETNINSCNLRFVQECQNQNNKRRFTFLYTGGTRNEKGQSVIFWPSNEAAQFLLSLYD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTGAGTGCTATGCATTGTTGTCACACCGTGTCGACTCTGATTGATCATCTACTGAAGATTGGACCAACGTTTCACTTCTTCATGCTGAAAACTAGAGCTGGAAT
TTTTCTCCTCAGCGTAGCTGCAAGGATCATACTGGAACTTGAACTGCTGCTTGCCTCTGTTCTTGATGGCTTTCTTCATTGCAGCTCTCATCCTCCAGAACAGTTTCCGG
AATTGCTTCCTACTGTAAGTTGCGATAGTTTCTGGGTATTTGAGGAAGATTATAAAGGATTCACAGACACAGAGACAAACATCAACAGTTGCAATCTGAGGTTTGTGCAG
GAGTGTCAGAACCAAAACAACAAAAGAAGATTCACCTTTTTGTATACAGGAGGAACGCGAAATGAGAAAGGGCAAAGCGTAATCTTTTGGCCTTCCAATGAAGCTGCGCA
GTTTCTGTTGAGCCTCTACGATTATCGGCCTTTTCTCCTTGGAGTCATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGAGAAGGAGAAGGAGAAGGAG
AGAGAGAGCTAATAGCAATTGCAGTGGGCAGAGAGCCTACAGAGACATATCAGTATCGAATATTGTTGCGGCAAAAGTAA
mRNA sequenceShow/hide mRNA sequence
GTCTGTTCTTACTCTTATGCGATCTTTCTTCCTTTTCGATTTTCCCGGGAAAACTCGAGGATTTTCGTATTTGGTTTCCTTCACTCTGATGCTAATCTCATCTCCGTGTA
GAAGAGGAGATCTGCATTGTGAAGTAGATTATAAACTATGGATTTGGAATTTCATTCCGTCCTTATCATTTAGTTTGAAGGCTATGGCACAAGGGGATTTTGATTTTTGA
GGTAGAGGTTTGGGAGTTATTGCGGAATTTCGATGGCATTGAGTGCTATGCATTGTTGTCACACCGTGTCGACTCTGATTGATCATCTACTGAAGATTGGACCAACGTTT
CACTTCTTCATGCTGAAAACTAGAGCTGGAATTTTTCTCCTCAGCGTAGCTGCAAGGATCATACTGGAACTTGAACTGCTGCTTGCCTCTGTTCTTGATGGCTTTCTTCA
TTGCAGCTCTCATCCTCCAGAACAGTTTCCGGAATTGCTTCCTACTGTAAGTTGCGATAGTTTCTGGGTATTTGAGGAAGATTATAAAGGATTCACAGACACAGAGACAA
ACATCAACAGTTGCAATCTGAGGTTTGTGCAGGAGTGTCAGAACCAAAACAACAAAAGAAGATTCACCTTTTTGTATACAGGAGGAACGCGAAATGAGAAAGGGCAAAGC
GTAATCTTTTGGCCTTCCAATGAAGCTGCGCAGTTTCTGTTGAGCCTCTACGATTATCGGCCTTTTCTCCTTGGAGTCATGTTGGAATGCTCAAATTCCATCAACTACAG
CGATAAAGACAGAGAAGGAGAAGGAGAAGGAGAGAGAGAGCTAATAGCAATTGCAGTGGGCAGAGAGCCTACAGAGACATATCAGTATCGAATATTGTTGCGGCAAAAGT
AACGAAGGAAGGTGACTATGTTCAACGTTGAACAGATGTAGGGAGTCGAGATTTTAAGGTCAGACCTCAGTGGAAGAGTAGACATCGTAACCATCCAGCTCCAATAATAC
CTCATTTTTCAACCAGGATTTGGATGGTATTCCTCTCATCCTAAATTTTTGAAGTTAAGAATTTCAAATTAAAGCCCTGGATCTCATTGATTTTGCCTTCCAAGTTCTAC
CTCATATTATGATGCAAAAGAATTGGAAAAGTATAAAGAGGAAATGCATTGGCCTTCGATTCAAGCATGCTAAATTGGTGTATTGCTTTTTAAGCTTAGGTGATAGGAAA
ATGACTTTTTATGTTATTGGGTAAAACTTACCTTTACTGTCCGAAGCCGAAAGTGTGTTGGCTAAAACATAGAAAAAGTTCCACGTTTTATATTTCCAATGTCACACACA
TCAATAGGATCTCTGCTGGATTTTCTTCAATATCTTTTCTTTGTTAGCTTTGCAGTAGCGATTATTTATTTATTTATTTATTTATTTATTTTTAAAACGGATGTGGATTT
CTTTACGGTGTAAATCAAAATGGAAATACAAGCTCAATGATAATAGTGGTTAAATTCCATACGTCTTTTTTTACTTATTTGGAGATGACCTAGTCCTTTTTTTTCTTTGT
TCTTTTTTCCTTTCTATGAACCTATGTCTTCTAGACTTTTCAG
Protein sequenceShow/hide protein sequence
MALSAMHCCHTVSTLIDHLLKIGPTFHFFMLKTRAGIFLLSVAARIILELELLLASVLDGFLHCSSHPPEQFPELLPTVSCDSFWVFEEDYKGFTDTETNINSCNLRFVQ
ECQNQNNKRRFTFLYTGGTRNEKGQSVIFWPSNEAAQFLLSLYDYRPFLLGVMLECSNSINYSDKDREGEGEGERELIAIAVGREPTETYQYRILLRQK