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Lsi01G003540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G003540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMucin-4 beta chain like
Genome locationchr01:3154351..3155034
RNA-Seq ExpressionLsi01G003540
SyntenyLsi01G003540
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441085.2 PREDICTED: VID27-like protein, partial [Cucumis melo]1.2e-5663.52Show/hide
Query:  SSSSTISIPSSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQ----TITNPAQSQLQSNFYTTEQPSQDCTTAAISSSASF
        SSSS++SI  S+PLFS LL+FFTLILL+FPPFLWTSLLSP +LLAGFL LSLLRLGATQR+    TITNP   +L        QP +  + + ISS    
Subjt:  SSSSTISIPSSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQ----TITNPAQSQLQSNFYTTEQPSQDCTTAAISSSASF

Query:  FEESFVQWNVRAPLEVIYEDYEEEEEEEGENHD-----------KDNPPEPGLLVRHIGS--IERYPSLSLYYPETDSDSSS---VDEMENVCFMWDEED
        FEESFVQWNVRAPLEVIYE YEEEEEEE E  +           +D   + G +V H+ S  +ERYPSLSLYYPETDSDSSS    DEMENVCFMWD+ED
Subjt:  FEESFVQWNVRAPLEVIYEDYEEEEEEEGENHD-----------KDNPPEPGLLVRHIGS--IERYPSLSLYYPETDSDSSS---VDEMENVCFMWDEED

Query:  EDKDELIEIALDNKKKPSEFFQLEAEEDNLIEIDISPTAFPMFI
         D +ELIEIALD K+  SE FQL  EE+NLIEI+ISPTAFP F+
Subjt:  EDKDELIEIALDNKKKPSEFFQLEAEEDNLIEIDISPTAFPMFI

XP_011658193.1 uncharacterized protein LOC105435960 [Cucumis sativus]1.7e-6164.9Show/hide
Query:  MSSSSTISIPSSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQ--------TITNPAQSQLQSNFYTTEQPSQDCTTAAIS
        MSSSS++SI  S+PLFS LL+FFTLILL+FPPFLWTSLLSP ++LAGFL LSLLRLGATQRQ        TITNP   +         QP + CT    S
Subjt:  MSSSSTISIPSSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQ--------TITNPAQSQLQSNFYTTEQPSQDCTTAAIS

Query:  SSASFFEESFVQWNVRAPLEVIYEDYEEEEEEEGENH---------DKDNPPEPG-LLVRHIGSIERYPSLSLYYPETDSD--SSSVDEMENVCFMWDEE
          +S FEESFVQWNVRAPLEVIYEDYEEE+EEE E           D+D   + G +L   + S+ERYPSLSLYYPETDSD  S + DEMENVCFMWD  
Subjt:  SSASFFEESFVQWNVRAPLEVIYEDYEEEEEEEGENH---------DKDNPPEPG-LLVRHIGSIERYPSLSLYYPETDSD--SSSVDEMENVCFMWDEE

Query:  DEDKDELIEIALDNKKKPSEFFQLEAEEDNLIEIDISPTAFPMFI
        DED+DELIEIALD K+  SEFFQL  EE+NLIEIDISPTAFPMFI
Subjt:  DEDKDELIEIALDNKKKPSEFFQLEAEEDNLIEIDISPTAFPMFI

XP_022926379.1 uncharacterized protein LOC111433544 [Cucurbita moschata]5.1e-4254.66Show/hide
Query:  SSSSTISIP-SSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQ----RQTITNPAQSQLQSNFYTTEQPSQDCTTA-------
        S++ T+SI  +S+PLFSTLL+FF L LLYFP  LW  L SP  LL GFLLLSLLRLGATQ    RQT  N  Q + + +  +      + +TA       
Subjt:  SSSSTISIP-SSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQ----RQTITNPAQSQLQSNFYTTEQPSQDCTTA-------

Query:  ----AISSSASFFEESFVQWNVRAPLEVIYEDYEEEEEEEGENHDKDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSVDEM----------ENVCF
            A S S + FEESFVQWNVRAPLEVIYE+YE E+ ++  +++ D  PEP  +   IG +ERYPSLSLYYPETDSDSSS D            +N+C 
Subjt:  ----AISSSASFFEESFVQWNVRAPLEVIYEDYEEEEEEEGENHDKDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSVDEM----------ENVCF

Query:  MWDEEDEDKDELIEIALD-NKKKPSEFFQLEAEEDNL--IEIDISPT
        MWD EDED+DELIEIALD   KK SEF     EEDNL  IEIDISPT
Subjt:  MWDEEDEDKDELIEIALD-NKKKPSEFFQLEAEEDNL--IEIDISPT

XP_023518306.1 uncharacterized protein LOC111781826 [Cucurbita pepo subsp. pepo]1.5e-4154.66Show/hide
Query:  SSSSTISIP-SSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQ----RQTITNPAQSQLQSNFYTTEQPSQDCTTA-------
        S++ T+SI  +S+PLFSTLL+FF L LLYFP  LW  L SP  LL GFLLLSLLRLGATQ    RQT  N  Q + + +         + +TA       
Subjt:  SSSSTISIP-SSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQ----RQTITNPAQSQLQSNFYTTEQPSQDCTTA-------

Query:  ----AISSSASFFEESFVQWNVRAPLEVIYEDYEEEEEEEGENHDKDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSVDEM----------ENVCF
            A S S + FEESFVQWNVRAPLEVIYE+YE E+ ++  +++ D  PEP  +   IG +ERYPSLSLYYPETDSDSSS D            +N+C 
Subjt:  ----AISSSASFFEESFVQWNVRAPLEVIYEDYEEEEEEEGENHDKDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSVDEM----------ENVCF

Query:  MWDEEDEDKDELIEIALD-NKKKPSEFFQLEAEEDNL--IEIDISPT
        MWD EDED+DELIEIALD   KK SEF     EEDNL  IEIDISPT
Subjt:  MWDEEDEDKDELIEIALD-NKKKPSEFFQLEAEEDNL--IEIDISPT

XP_038883304.1 uncharacterized protein LOC120074292 [Benincasa hispida]1.2e-7075.65Show/hide
Query:  MSSSSTISIPSSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQTITNPAQSQLQSNFYTTEQPSQDCTTAAISSSAS-FFE
        MSSS+T     S+PLFSTLL+F  LILLYFP FLWTSLLSPPVLLAG L LSLLRLGATQ Q       SQLQSN  + +Q SQ  + A ISSSAS  FE
Subjt:  MSSSSTISIPSSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQTITNPAQSQLQSNFYTTEQPSQDCTTAAISSSAS-FFE

Query:  ESFVQWNVRAPLEVIYEDYEEEEEEEGENHDKDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSVDEMENVCFMWDEEDEDKDELIEIALDNKKK--
        +SFVQWNVRAPLEVIYEDYEEEEEEE    +KD+ PEP    R   SI+ YPSLSLYYPETDSDSSSVDEMENVCFMWDEEDED+DELIEI LDNKKK  
Subjt:  ESFVQWNVRAPLEVIYEDYEEEEEEEGENHDKDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSVDEMENVCFMWDEEDEDKDELIEIALDNKKK--

Query:  PSEFFQLEAEEDNLIEIDISPTAFPMFINI
        PSEFFQLE EEDNLIEIDISPTAFPMFINI
Subjt:  PSEFFQLEAEEDNLIEIDISPTAFPMFINI

TrEMBL top hitse value%identityAlignment
A0A0A0KLD5 Uncharacterized protein8.1e-6264.9Show/hide
Query:  MSSSSTISIPSSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQ--------TITNPAQSQLQSNFYTTEQPSQDCTTAAIS
        MSSSS++SI  S+PLFS LL+FFTLILL+FPPFLWTSLLSP ++LAGFL LSLLRLGATQRQ        TITNP   +         QP + CT    S
Subjt:  MSSSSTISIPSSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQ--------TITNPAQSQLQSNFYTTEQPSQDCTTAAIS

Query:  SSASFFEESFVQWNVRAPLEVIYEDYEEEEEEEGENH---------DKDNPPEPG-LLVRHIGSIERYPSLSLYYPETDSD--SSSVDEMENVCFMWDEE
          +S FEESFVQWNVRAPLEVIYEDYEEE+EEE E           D+D   + G +L   + S+ERYPSLSLYYPETDSD  S + DEMENVCFMWD  
Subjt:  SSASFFEESFVQWNVRAPLEVIYEDYEEEEEEEGENH---------DKDNPPEPG-LLVRHIGSIERYPSLSLYYPETDSD--SSSVDEMENVCFMWDEE

Query:  DEDKDELIEIALDNKKKPSEFFQLEAEEDNLIEIDISPTAFPMFI
        DED+DELIEIALD K+  SEFFQL  EE+NLIEIDISPTAFPMFI
Subjt:  DEDKDELIEIALDNKKKPSEFFQLEAEEDNLIEIDISPTAFPMFI

A0A1S3B395 VID27-like protein6.0e-5763.52Show/hide
Query:  SSSSTISIPSSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQ----TITNPAQSQLQSNFYTTEQPSQDCTTAAISSSASF
        SSSS++SI  S+PLFS LL+FFTLILL+FPPFLWTSLLSP +LLAGFL LSLLRLGATQR+    TITNP   +L        QP +  + + ISS    
Subjt:  SSSSTISIPSSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQ----TITNPAQSQLQSNFYTTEQPSQDCTTAAISSSASF

Query:  FEESFVQWNVRAPLEVIYEDYEEEEEEEGENHD-----------KDNPPEPGLLVRHIGS--IERYPSLSLYYPETDSDSSS---VDEMENVCFMWDEED
        FEESFVQWNVRAPLEVIYE YEEEEEEE E  +           +D   + G +V H+ S  +ERYPSLSLYYPETDSDSSS    DEMENVCFMWD+ED
Subjt:  FEESFVQWNVRAPLEVIYEDYEEEEEEEGENHD-----------KDNPPEPGLLVRHIGS--IERYPSLSLYYPETDSDSSS---VDEMENVCFMWDEED

Query:  EDKDELIEIALDNKKKPSEFFQLEAEEDNLIEIDISPTAFPMFI
         D +ELIEIALD K+  SE FQL  EE+NLIEI+ISPTAFP F+
Subjt:  EDKDELIEIALDNKKKPSEFFQLEAEEDNLIEIDISPTAFPMFI

A0A6J1CME6 uncharacterized protein LOC1110124587.4e-3952.89Show/hide
Query:  SNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQTITNPAQSQLQSNF-------YTTEQPSQDCTTAAISS-----------
        S+PLFSTLLTFF LILL FP   W  L SP  LL G LLLSLLRLGATQR       ++Q++S            E+  +    A +S            
Subjt:  SNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQTITNPAQSQLQSNF-------YTTEQPSQDCTTAAISS-----------

Query:  SASFFEESFVQWNVRAPLEVIYEDYEEEEEEEGENHD---KDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSVDE---------MENVCFMWDEED
        S + FEESFVQWNVRAPLEVIYE+YE E++++  N      +  P P + VR    IERYPSLSLYYPETDSDSSS DE         ++++CFMWD + 
Subjt:  SASFFEESFVQWNVRAPLEVIYEDYEEEEEEEGENHD---KDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSVDE---------MENVCFMWDEED

Query:  EDKDELIEIALD---NK-KKPSEFFQLEAEEDNLIEIDISPT
        ED+DELIEIALD   NK K  SE FQL  EE+NLIEIDISPT
Subjt:  EDKDELIEIALD---NK-KKPSEFFQLEAEEDNLIEIDISPT

A0A6J1EEY1 uncharacterized protein LOC1114335442.5e-4254.66Show/hide
Query:  SSSSTISIP-SSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQ----RQTITNPAQSQLQSNFYTTEQPSQDCTTA-------
        S++ T+SI  +S+PLFSTLL+FF L LLYFP  LW  L SP  LL GFLLLSLLRLGATQ    RQT  N  Q + + +  +      + +TA       
Subjt:  SSSSTISIP-SSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQ----RQTITNPAQSQLQSNFYTTEQPSQDCTTA-------

Query:  ----AISSSASFFEESFVQWNVRAPLEVIYEDYEEEEEEEGENHDKDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSVDEM----------ENVCF
            A S S + FEESFVQWNVRAPLEVIYE+YE E+ ++  +++ D  PEP  +   IG +ERYPSLSLYYPETDSDSSS D            +N+C 
Subjt:  ----AISSSASFFEESFVQWNVRAPLEVIYEDYEEEEEEEGENHDKDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSVDEM----------ENVCF

Query:  MWDEEDEDKDELIEIALD-NKKKPSEFFQLEAEEDNL--IEIDISPT
        MWD EDED+DELIEIALD   KK SEF     EEDNL  IEIDISPT
Subjt:  MWDEEDEDKDELIEIALD-NKKKPSEFFQLEAEEDNL--IEIDISPT

A0A6J1KY66 uncharacterized protein LOC1114974335.1e-4053.66Show/hide
Query:  SSSSTISIP-SSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQ----RQTITNPAQSQLQSNFYTTEQPSQDCTTA-------
        S++ T+SI  +S+PL STLL+FF L LLYFP  LW  L SP  LL GFLLLSLLRLGATQ    RQT  N  Q + + +         + +TA       
Subjt:  SSSSTISIP-SSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQ----RQTITNPAQSQLQSNFYTTEQPSQDCTTA-------

Query:  ----AISSSASFFEESFVQWNVRAPLEVIYEDYEEEEEEEGENHDKDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSVDEM----------ENVCF
            A S S   FEESFVQWNVRAPLEVIYE+YE E+ ++  +++ D  PEP  +   IG +ERYPSLSLYYPETDSDSSS D            +++C 
Subjt:  ----AISSSASFFEESFVQWNVRAPLEVIYEDYEEEEEEEGENHDKDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSVDEM----------ENVCF

Query:  MWDEEDEDKDELIEIALD-NKKKPSEFFQLEAEEDNL--IEIDISP
        MWD EDED+DELIEIALD   KK SEF     EEDNL  IEIDISP
Subjt:  MWDEEDEDKDELIEIALD-NKKKPSEFFQLEAEEDNL--IEIDISP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G05018.1 unknown protein6.7e-0830.92Show/hide
Query:  SNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQTITNPAQSQLQSNFYTTEQPSQDCTTAAISSSASFFEESFVQWNVR--A
        S+PLFS  ++ +T+ LLYFP      L+S   LL G  L+S L LG+T R++I  P               ++D     + +        F++WN +  A
Subjt:  SNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQTITNPAQSQLQSNFYTTEQPSQDCTTAAISSSASFFEESFVQWNVR--A

Query:  PLEVIYEDYEEEEEEEGENHDKDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSVDEMENVCFMWDEEDEDKDELIEIALDNKKKPSEFFQLEAEED
        PLEVI+    +EEEE+     KD    P   V     I+R+PSLS++ PE+DS      E++    +  E D  +     + L+   KP      ++E D
Subjt:  PLEVIYEDYEEEEEEEGENHDKDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSVDEMENVCFMWDEEDEDKDELIEIALDNKKKPSEFFQLEAEED

Query:  NLIEIDI
        N + ID+
Subjt:  NLIEIDI

AT4G21500.1 unknown protein6.6e-2441.41Show/hide
Query:  SNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQTITNPAQSQLQSNFYTTEQPSQDCTTAAISSSASFFEESFVQWNVRAPL
        S+PLFS  +T ++LIL+YFP  L    LSP +L++G LLLSLLRLG+T R+  T P +S  +S     E+P             S     FV+WN+RAPL
Subjt:  SNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQTITNPAQSQLQSNFYTTEQPSQDCTTAAISSSASFFEESFVQWNVRAPL

Query:  EVIYEDYEEEEEEEGENHDKDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSV-------------DEMENVCFMWDEEDE--DKDELIEIALD---
        EVI+E YE+EEEEE    ++++P            +ER+PSLSL YPE+DS+S S              +  EN+ F W+E++     + LIEI LD   
Subjt:  EVIYEDYEEEEEEEGENHDKDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSV-------------DEMENVCFMWDEEDE--DKDELIEIALD---

Query:  -NKKKPSEF-FQLEAEEDNLIEIDISP
         N+K  S+      AEED LIEID+ P
Subjt:  -NKKKPSEF-FQLEAEEDNLIEIDISP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTTCTTCTACCATTTCCATTCCCTCTTCCAATCCTCTGTTTTCAACTCTTCTCACTTTCTTCACTCTCATTCTCCTCTACTTCCCTCCCTTTCTCTGGACTTC
CCTCCTCTCTCCCCCCGTCCTCCTCGCCGGATTCCTCCTCCTCTCCCTTCTCCGCCTCGGCGCTACTCAACGCCAAACCATCACCAACCCCGCCCAATCTCAACTTCAAT
CCAATTTTTATACTACTGAACAACCATCACAAGACTGTACGACTGCTGCCATTTCTTCCTCTGCCTCCTTCTTCGAGGAATCTTTCGTACAGTGGAACGTCAGGGCGCCG
TTGGAGGTTATTTACGAAGACTACGAAGAAGAAGAAGAAGAAGAAGGCGAAAATCACGATAAAGACAATCCTCCAGAGCCTGGACTACTGGTACGACACATCGGATCAAT
CGAGAGGTATCCATCTCTGTCGCTCTACTATCCGGAAACGGATTCCGATAGCTCGTCGGTGGATGAGATGGAGAATGTGTGTTTTATGTGGGATGAGGAGGATGAAGATA
AAGATGAACTGATCGAGATTGCTTTGGATAACAAGAAAAAGCCATCGGAATTTTTTCAATTGGAGGCGGAGGAGGATAATTTGATCGAGATTGATATTTCTCCAACCGCT
TTTCCAATGTTTATTAATATATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCTTCTTCTACCATTTCCATTCCCTCTTCCAATCCTCTGTTTTCAACTCTTCTCACTTTCTTCACTCTCATTCTCCTCTACTTCCCTCCCTTTCTCTGGACTTC
CCTCCTCTCTCCCCCCGTCCTCCTCGCCGGATTCCTCCTCCTCTCCCTTCTCCGCCTCGGCGCTACTCAACGCCAAACCATCACCAACCCCGCCCAATCTCAACTTCAAT
CCAATTTTTATACTACTGAACAACCATCACAAGACTGTACGACTGCTGCCATTTCTTCCTCTGCCTCCTTCTTCGAGGAATCTTTCGTACAGTGGAACGTCAGGGCGCCG
TTGGAGGTTATTTACGAAGACTACGAAGAAGAAGAAGAAGAAGAAGGCGAAAATCACGATAAAGACAATCCTCCAGAGCCTGGACTACTGGTACGACACATCGGATCAAT
CGAGAGGTATCCATCTCTGTCGCTCTACTATCCGGAAACGGATTCCGATAGCTCGTCGGTGGATGAGATGGAGAATGTGTGTTTTATGTGGGATGAGGAGGATGAAGATA
AAGATGAACTGATCGAGATTGCTTTGGATAACAAGAAAAAGCCATCGGAATTTTTTCAATTGGAGGCGGAGGAGGATAATTTGATCGAGATTGATATTTCTCCAACCGCT
TTTCCAATGTTTATTAATATATAA
Protein sequenceShow/hide protein sequence
MSSSSTISIPSSNPLFSTLLTFFTLILLYFPPFLWTSLLSPPVLLAGFLLLSLLRLGATQRQTITNPAQSQLQSNFYTTEQPSQDCTTAAISSSASFFEESFVQWNVRAP
LEVIYEDYEEEEEEEGENHDKDNPPEPGLLVRHIGSIERYPSLSLYYPETDSDSSSVDEMENVCFMWDEEDEDKDELIEIALDNKKKPSEFFQLEAEEDNLIEIDISPTA
FPMFINI