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Lsi01G003580 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G003580
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLysM domain-containing protein
Genome locationchr01:3186190..3188279
RNA-Seq ExpressionLsi01G003580
SyntenyLsi01G003580
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0016798 - hydrolase activity, acting on glycosyl bonds (molecular function)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]9.7e-2168.66Show/hide
Query:  MFGGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT
        +F  V   EA LEL+CNK YGVK+GDTCF + Q FK++T+HF+FINPNLNCSALF+ QWLC+NAFLT
Subjt:  MFGGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]8.8e-2276.47Show/hide
Query:  FGGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLTIP
        F GV   EAGLEL+CNKVYGVKNGDTCFDL Q FKI+T HF+FINPNLNC+ LFIGQWLCL+A L +P
Subjt:  FGGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLTIP

PQQ05751.1 hypothetical protein Pyn_28323 [Prunus yedoensis var. nudiflora]5.2e-1462.96Show/hide
Query:  LECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT
        L+C  VYGVK+GDTCF++ +TF + TE F+ INPNLNC+ALF+GQW+CLN  L+
Subjt:  LECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]1.4e-2276.92Show/hide
Query:  GGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT
        G V  AE  LEL+CNK YGVK+GDTCF L  TFK+ST+HFNFINPNLNCSALF+GQWLC+NAFLT
Subjt:  GGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]1.3e-2070.77Show/hide
Query:  GGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT
        G V   EA LEL+CNK YGVK+GDTCF + Q FK++T+HF+FINPNLNCSALF+ QWLC+NAFLT
Subjt:  GGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein4.3e-2276.47Show/hide
Query:  FGGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLTIP
        F GV   EAGLEL+CNKVYGVKNGDTCFDL Q FKI+T HF+FINPNLNC+ LFIGQWLCL+A L +P
Subjt:  FGGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLTIP

A0A0A0KLD2 LysM domain-containing protein4.7e-2168.66Show/hide
Query:  MFGGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT
        +F  V   EA LEL+CNK YGVK+GDTCF + Q FK++T+HF+FINPNLNCSALF+ QWLC+NAFLT
Subjt:  MFGGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like6.6e-2376.92Show/hide
Query:  GGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT
        G V  AE  LEL+CNK YGVK+GDTCF L  TFK+ST+HFNFINPNLNCSALF+GQWLC+NAFLT
Subjt:  GGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT

A0A314YKP2 LysM domain-containing protein2.5e-1462.96Show/hide
Query:  LECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT
        L+C  VYGVK+GDTCF++ +TF + TE F+ INPNLNC+ALF+GQW+CLN  L+
Subjt:  LECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT

M5WNV7 LysM domain-containing protein3.3e-1464.81Show/hide
Query:  LECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT
        L+C  VYGVK+GDTCF + QTF + TE F+ INPNLNC+ALF+GQW+CLN  L+
Subjt:  LECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGGTGGGGTTGCTGAGGCAGAAGCAGGCTTGGAGTTAGAATGCAACAAAGTTTATGGAGTAAAAAATGGAGACACTTGCTTTGATCTTGGCCAGACATTCAAGAT
CTCCACTGAACACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTTTTTATTGGCCAGTGGCTCTGTCTCAATGCCTTCCTTACCATTCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCGGTGGGGTTGCTGAGGCAGAAGCAGGCTTGGAGTTAGAATGCAACAAAGTTTATGGAGTAAAAAATGGAGACACTTGCTTTGATCTTGGCCAGACATTCAAGAT
CTCCACTGAACACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTTTTTATTGGCCAGTGGCTCTGTCTCAATGCCTTCCTTACCATTCCTTAG
Protein sequenceShow/hide protein sequence
MFGGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLTIP