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Lsi01G003590 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G003590
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLysM domain-containing protein
Genome locationchr01:3192840..3193238
RNA-Seq ExpressionLsi01G003590
SyntenyLsi01G003590
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]3.0e-1867.07Show/hide
Query:  MAKAITSIAIFLLALSLLIFSIAVEGRG----TIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL
        MAKA  SIAIFLLA SLLIF+I+V+GR      +  EA LELQCN+   VKSGDTCF +AQ FKL+T  F+FINPNLNCSAL
Subjt:  MAKAITSIAIFLLALSLLIFSIAVEGRG----TIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]1.8e-1563.86Show/hide
Query:  MAKAI--TSIAIFLLALSLLIFSIAVEGRGTI---KPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL
        MAKA+  +S  IFLLA SLLIFSI+VE R T      EA LELQCN+V  VK+GDTCFDL Q FK++T  F+FINPNLNC+ L
Subjt:  MAKAI--TSIAIFLLALSLLIFSIAVEGRGTI---KPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL

TMW90128.1 hypothetical protein EJD97_016167 [Solanum chilense]3.0e-1047.67Show/hide
Query:  MAKAITSIAIFLLALSLLIFSIAVEGRGTI--------KPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL
        MAK    +  F+L LSLL+F   VE + TI         P    E++C++V+ VK GDTCFD++ TF L   EFN INPNLNC+AL
Subjt:  MAKAITSIAIFLLALSLLIFSIAVEGRGTI--------KPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]6.7e-1870.51Show/hide
Query:  MAKAITSIAIFLLALSLLIFSIAVEGRGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL
        MAKA   IAIFLLA  LLIFSI+V+G   +  E  LELQCN+   VKSGDTCF LA TFKLST  FNFINPNLNCSAL
Subjt:  MAKAITSIAIFLLALSLLIFSIAVEGRGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]5.1e-1869.23Show/hide
Query:  MAKAITSIAIFLLALSLLIFSIAVEGRGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL
        MAKA  SIAIFLLA SLLIF+I+V+G   ++ EA LELQCN+   VKSGDTCF +AQ FKL+T  F+FINPNLNCSAL
Subjt:  MAKAITSIAIFLLALSLLIFSIAVEGRGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein8.8e-1663.86Show/hide
Query:  MAKAI--TSIAIFLLALSLLIFSIAVEGRGTI---KPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL
        MAKA+  +S  IFLLA SLLIFSI+VE R T      EA LELQCN+V  VK+GDTCFDL Q FK++T  F+FINPNLNC+ L
Subjt:  MAKAI--TSIAIFLLALSLLIFSIAVEGRGTI---KPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL

A0A0A0KLD2 LysM domain-containing protein1.4e-1867.07Show/hide
Query:  MAKAITSIAIFLLALSLLIFSIAVEGRG----TIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL
        MAKA  SIAIFLLA SLLIF+I+V+GR      +  EA LELQCN+   VKSGDTCF +AQ FKL+T  F+FINPNLNCSAL
Subjt:  MAKAITSIAIFLLALSLLIFSIAVEGRG----TIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like3.2e-1870.51Show/hide
Query:  MAKAITSIAIFLLALSLLIFSIAVEGRGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL
        MAKA   IAIFLLA  LLIFSI+V+G   +  E  LELQCN+   VKSGDTCF LA TFKLST  FNFINPNLNCSAL
Subjt:  MAKAITSIAIFLLALSLLIFSIAVEGRGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL

A0A2Z7A4L5 LysM domain-containing protein1.9e-1050.6Show/hide
Query:  MAKAITSIAI---FLLALSLLIFSIAVEGRGTI--KPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL
        MAKA  + +I   F L LSL++ +   E R TI  K +A + L CN V AV  GDTCFD+A++F L+T EF+ INPN+NC AL
Subjt:  MAKAITSIAI---FLLALSLLIFSIAVEGRGTI--KPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL

A0A6N2B813 LysM domain-containing protein1.5e-1047.67Show/hide
Query:  MAKAITSIAIFLLALSLLIFSIAVEGRGTI--------KPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL
        MAK    +  F+L LSLL+F   VE + TI         P    E++C++V+ VK GDTCFD++ TF L   EFN INPNLNC+AL
Subjt:  MAKAITSIAIFLLALSLLIFSIAVEGRGTI--------KPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGGCTATTACTTCAATTGCCATCTTCCTATTGGCTCTCTCTCTTCTCATTTTTTCAATTGCTGTGGAAGGTCGTGGTACTATTAAGCCAGAAGCAAGGTTGGA
GTTGCAATGCAACAGAGTTATTGCAGTAAAGAGTGGAGACACCTGCTTTGATCTTGCCCAGACATTCAAGCTCTCCACTGTTGAATTCAATTTTATCAATCCAAATCTCA
ATTGCTCTGCTCTC
mRNA sequenceShow/hide mRNA sequence
AAACCAAAATTATGGCGAAGGCTATTACTTCAATTGCCATCTTCCTATTGGCTCTCTCTCTTCTCATTTTTTCAATTGCTGTGGAAGGTCGTGGTACTATTAAGCCAGAA
GCAAGGTTGGAGTTGCAATGCAACAGAGTTATTGCAGTAAAGAGTGGAGACACCTGCTTTGATCTTGCCCAGACATTCAAGCTCTCCACTGTTGAATTCAATTTTATCAA
TCCAAATCTCAATTGCTCTGCTCTC
Protein sequenceShow/hide protein sequence
MAKAITSIAIFLLALSLLIFSIAVEGRGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL