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Lsi01G004000 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G004000
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box domain-containing protein
Genome locationchr01:3426066..3426623
RNA-Seq ExpressionLsi01G004000
SyntenyLsi01G004000
Gene Ontology termsNA
InterPro domainsIPR011043 - Galactose oxidase/kelch, beta-propeller
IPR017451 - F-box associated interaction domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK13067.1 putative F-box protein [Cucumis melo var. makuwa]2.4e-5059.14Show/hide
Query:  MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTSGD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-
        MTNEY KFP EK K+    G  YSYGLGF+PK KQYKIAR S   D+S  LVEIF FG++   WT VG LPS V E+HGVYFNGGLYW+ ++ +PHD + 
Subjt:  MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTSGD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-

Query:  NVIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQ
        + IYRLDIENE LE IS PQ+    FF GVFDGTLYLT+S    + +KY VWKM+++FSW K FV+ +P+ L  P HP QP G  Q
Subjt:  NVIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQ

XP_004134745.1 F-box protein At3g07870 [Cucumis sativus]2.9e-5159.68Show/hide
Query:  MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTSGD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-
        MTNEY KFP EK K+    G  YSYGLGF+PKTKQYKIAR S   D+S  LVEIF FG++   WTPVG LPS V E+HGVYF GGLYW+ ++ +PHD + 
Subjt:  MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTSGD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-

Query:  NVIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQ
        + IYRLD+ENEKLE IS PQ     FF GVFDGTLYLT+S    + +KY VWKM+++FSW K FV+  P+ L  P HP QP G  Q
Subjt:  NVIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQ

XP_008439950.1 PREDICTED: putative F-box protein At3g21120 [Cucumis melo]5.4e-5059.14Show/hide
Query:  MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTSGD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-
        MTNEY KFP EK K+    G  YSYGLGF+PK KQYKIAR S   D+S  LVEIF FG+    WT VG LPS V E+HGVYFNGGLYW+ ++ +PHD + 
Subjt:  MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTSGD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-

Query:  NVIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQ
        + IYRLDIENE LE IS PQ+    FF GVFDGTLYLT+S    + +KY VWKM+++FSW K FV+ +P+ L  P HP QP G  Q
Subjt:  NVIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQ

XP_038880514.1 putative F-box protein At1g46984 [Benincasa hispida]1.0e-4551.85Show/hide
Query:  MTNEYIKFPLEKLKAPGGGTYSYGLGFSPKTKQYKIARISSVRDKSLVEIFRFGTSGDWTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPH-DFTNVIYR
        MTNEY K P  + K      Y YGLGFSP+TKQYK+AR   V  + +VEIF FGTS +WTPVG +P ++ E HGVYFNGGLYW+G +  P+   ++VIYR
Subjt:  MTNEYIKFPLEKLKAPGGGTYSYGLGFSPKTKQYKIARISSVRDKSLVEIFRFGTSGDWTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPH-DFTNVIYR

Query:  LDIENEKLETISFPQNGE---VIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELR--LPKHPQQPIGSCQQRV
        LD+E++K + ISFP +G+      ++GV++ TLYLT+  G     +YHVWKMEEDFSW K+FVL  P+ +   LP+H   PIG C Q +
Subjt:  LDIENEKLETISFPQNGE---VIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELR--LPKHPQQPIGSCQQRV

XP_038883771.1 putative F-box protein At1g60370 [Benincasa hispida]1.7e-5663.35Show/hide
Query:  MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKSL--VEIFRFGTSGDWTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFTNV
        MTNEY KFP EK K     G  YSYGLGFSP+TKQYKIAR S +RD+S   VEIF FGT+ +WTPVGVLPS V E+HGVYFNGGLYW  DEL P D  N 
Subjt:  MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKSL--VEIFRFGTSGDWTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFTNV

Query:  IYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQ-------QPIGSCQ
        IYRLDIENEKLE IS P  G   FF GVFDGTLYLT  TG +  + Y VWKMEE+ SW K FVL  P+ LR P+H Q       QPI  C+
Subjt:  IYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQ-------QPIGSCQ

TrEMBL top hitse value%identityAlignment
A0A0A0KJY9 F-box domain-containing protein1.4e-5159.68Show/hide
Query:  MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTSGD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-
        MTNEY KFP EK K+    G  YSYGLGF+PKTKQYKIAR S   D+S  LVEIF FG++   WTPVG LPS V E+HGVYF GGLYW+ ++ +PHD + 
Subjt:  MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTSGD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-

Query:  NVIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQ
        + IYRLD+ENEKLE IS PQ     FF GVFDGTLYLT+S    + +KY VWKM+++FSW K FV+  P+ L  P HP QP G  Q
Subjt:  NVIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQ

A0A1S3B0Q6 putative F-box protein At3g211202.6e-5059.14Show/hide
Query:  MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTSGD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-
        MTNEY KFP EK K+    G  YSYGLGF+PK KQYKIAR S   D+S  LVEIF FG+    WT VG LPS V E+HGVYFNGGLYW+ ++ +PHD + 
Subjt:  MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTSGD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-

Query:  NVIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQ
        + IYRLDIENE LE IS PQ+    FF GVFDGTLYLT+S    + +KY VWKM+++FSW K FV+ +P+ L  P HP QP G  Q
Subjt:  NVIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQ

A0A1S3BQV8 putative F-box protein At3g211201.1e-4348.94Show/hide
Query:  MTNEYIKFPLEKLKAPGGGTYSYGLGFSPKTKQYKIARISSVRDKSLVEIFRFGTSGDWTPVGVLPSYVTEEHGVYFNGGLYWIGDELN-PH----DFTN
        +TNEY K P  +LK      Y YGLGFSPKT QYK+AR     ++ +V+IF FGTS +WTP+G +P+++ E HGVYFNGGLYW+G +   P+    D+T 
Subjt:  MTNEYIKFPLEKLKAPGGGTYSYGLGFSPKTKQYKIARISSVRDKSLVEIFRFGTSGDWTPVGVLPSYVTEEHGVYFNGGLYWIGDELN-PH----DFTN

Query:  VIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQQRV
        V+YRLD+ +EK + IS P  G+   ++GV++GTLYLT+         YHVWKM+EDFSW+K+FVL  P+ +    H   PIG   Q V
Subjt:  VIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQQRV

A0A5D3CIX9 Putative F-box protein1.1e-4348.94Show/hide
Query:  MTNEYIKFPLEKLKAPGGGTYSYGLGFSPKTKQYKIARISSVRDKSLVEIFRFGTSGDWTPVGVLPSYVTEEHGVYFNGGLYWIGDELN-PH----DFTN
        +TNEY K P  +LK      Y YGLGFSPKT QYK+AR     ++ +V+IF FGTS +WTP+G +P+++ E HGVYFNGGLYW+G +   P+    D+T 
Subjt:  MTNEYIKFPLEKLKAPGGGTYSYGLGFSPKTKQYKIARISSVRDKSLVEIFRFGTSGDWTPVGVLPSYVTEEHGVYFNGGLYWIGDELN-PH----DFTN

Query:  VIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQQRV
        V+YRLD+ +EK + IS P  G+   ++GV++GTLYLT+         YHVWKM+EDFSW+K+FVL  P+ +    H   PIG   Q V
Subjt:  VIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQQRV

A0A5D3CM94 Putative F-box protein1.2e-5059.14Show/hide
Query:  MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTSGD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-
        MTNEY KFP EK K+    G  YSYGLGF+PK KQYKIAR S   D+S  LVEIF FG++   WT VG LPS V E+HGVYFNGGLYW+ ++ +PHD + 
Subjt:  MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTSGD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-

Query:  NVIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQ
        + IYRLDIENE LE IS PQ+    FF GVFDGTLYLT+S    + +KY VWKM+++FSW K FV+ +P+ L  P HP QP G  Q
Subjt:  NVIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAATGAGTACATAAAATTTCCCCTAGAAAAATTGAAAGCACCTGGTGGTGGAACCTATAGCTACGGATTAGGATTCAGCCCTAAAACAAAGCAGTACAAAATAGC
TCGAATATCCTCTGTACGTGATAAATCCTTGGTAGAGATTTTTAGATTCGGGACAAGTGGCGATTGGACCCCTGTTGGGGTTTTGCCTTCATATGTCACTGAAGAGCATG
GCGTTTATTTCAATGGAGGCCTCTATTGGATCGGAGACGAGCTGAACCCACATGATTTTACTAATGTCATTTACCGTTTGGACATAGAAAATGAGAAATTGGAGACAATT
TCATTTCCGCAAAATGGCGAAGTTATTTTTTTCCTTGGAGTTTTTGATGGCACCCTCTATCTAACTATTTCCACCGGCTTCATGAGGATGGACAAGTACCATGTGTGGAA
GATGGAAGAAGATTTTTCATGGACTAAACAATTTGTTTTACCCAACCCAAAAGAATTGCGTCTTCCTAAGCATCCTCAACAACCTATTGGATCATGTCAACAACGTGTTA
TGATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAAATGAGTACATAAAATTTCCCCTAGAAAAATTGAAAGCACCTGGTGGTGGAACCTATAGCTACGGATTAGGATTCAGCCCTAAAACAAAGCAGTACAAAATAGC
TCGAATATCCTCTGTACGTGATAAATCCTTGGTAGAGATTTTTAGATTCGGGACAAGTGGCGATTGGACCCCTGTTGGGGTTTTGCCTTCATATGTCACTGAAGAGCATG
GCGTTTATTTCAATGGAGGCCTCTATTGGATCGGAGACGAGCTGAACCCACATGATTTTACTAATGTCATTTACCGTTTGGACATAGAAAATGAGAAATTGGAGACAATT
TCATTTCCGCAAAATGGCGAAGTTATTTTTTTCCTTGGAGTTTTTGATGGCACCCTCTATCTAACTATTTCCACCGGCTTCATGAGGATGGACAAGTACCATGTGTGGAA
GATGGAAGAAGATTTTTCATGGACTAAACAATTTGTTTTACCCAACCCAAAAGAATTGCGTCTTCCTAAGCATCCTCAACAACCTATTGGATCATGTCAACAACGTGTTA
TGATCTAA
Protein sequenceShow/hide protein sequence
MTNEYIKFPLEKLKAPGGGTYSYGLGFSPKTKQYKIARISSVRDKSLVEIFRFGTSGDWTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFTNVIYRLDIENEKLETI
SFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQQRVMI