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Lsi01G004020 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G004020
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr01:3445303..3446455
RNA-Seq ExpressionLsi01G004020
SyntenyLsi01G004020
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439956.1 PREDICTED: uncharacterized protein LOC103484588 isoform X1 [Cucumis melo]2.8e-2978.57Show/hide
Query:  MELADNPKS-VIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIG
        MELAD PKS VI  GEVN+GLEKAVISDQ+NRFQY TK DSFIIDMD+ SN   KEISHNSRI++NFSRKGMLRGG+K+GQD+GDGD+ AGESISP+G
Subjt:  MELADNPKS-VIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIG

XP_022950211.1 uncharacterized protein LOC111453372 isoform X2 [Cucurbita moschata]1.7e-2974.75Show/hide
Query:  MELADNPKSVIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIGKV
        MELA+NPKSVI   E  NG E+AV+SDQ+NRFQYKTK DSFIIDMDSFSN++S EI  N RI +NFSRKGMLRGGNKMGQ HGDGDD  G+SISP+G V
Subjt:  MELADNPKSVIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIGKV

XP_023544499.1 uncharacterized protein LOC111804055 isoform X1 [Cucurbita pepo subsp. pepo]1.3e-2975.51Show/hide
Query:  MELADNPKSVIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIGK
        MELA+NPKSVI   E  NG E+AV+SDQ+NRFQYKTK DSFIIDMDSFSN++S EIS N RI +NFSRKGMLRGGNKMGQ HGDGDD  G+SISP+ K
Subjt:  MELADNPKSVIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIGK

XP_023544500.1 uncharacterized protein LOC111804055 isoform X2 [Cucurbita pepo subsp. pepo]2.0e-3075.76Show/hide
Query:  MELADNPKSVIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIGKV
        MELA+NPKSVI   E  NG E+AV+SDQ+NRFQYKTK DSFIIDMDSFSN++S EIS N RI +NFSRKGMLRGGNKMGQ HGDGDD  G+SISP+G V
Subjt:  MELADNPKSVIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIGKV

XP_023544501.1 uncharacterized protein LOC111804055 isoform X3 [Cucurbita pepo subsp. pepo]4.4e-3076.29Show/hide
Query:  MELADNPKSVIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIG
        MELA+NPKSVI   E  NG E+AV+SDQ+NRFQYKTK DSFIIDMDSFSN++S EIS N RI +NFSRKGMLRGGNKMGQ HGDGDD  G+SISP+G
Subjt:  MELADNPKSVIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIG

TrEMBL top hitse value%identityAlignment
A0A0A0KN31 Uncharacterized protein1.4e-2974.75Show/hide
Query:  MELADNPKS--VIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIG
        MELAD PKS  +I   EVN+GLEK+VISD++NRFQY TK DSFIIDMD+ SN   KEISHNSRI++NFSRKGMLRGGNK+GQD+GDGD+  GESISPIG
Subjt:  MELADNPKS--VIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIG

A0A1S3B0M0 uncharacterized protein LOC103484588 isoform X11.4e-2978.57Show/hide
Query:  MELADNPKS-VIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIG
        MELAD PKS VI  GEVN+GLEKAVISDQ+NRFQY TK DSFIIDMD+ SN   KEISHNSRI++NFSRKGMLRGG+K+GQD+GDGD+ AGESISP+G
Subjt:  MELADNPKS-VIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIG

A0A6J1GE64 uncharacterized protein LOC111453372 isoform X31.8e-2975.26Show/hide
Query:  MELADNPKSVIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIG
        MELA+NPKSVI   E  NG E+AV+SDQ+NRFQYKTK DSFIIDMDSFSN++S EI  N RI +NFSRKGMLRGGNKMGQ HGDGDD  G+SISP+G
Subjt:  MELADNPKSVIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIG

A0A6J1GE74 uncharacterized protein LOC111453372 isoform X28.0e-3074.75Show/hide
Query:  MELADNPKSVIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIGKV
        MELA+NPKSVI   E  NG E+AV+SDQ+NRFQYKTK DSFIIDMDSFSN++S EI  N RI +NFSRKGMLRGGNKMGQ HGDGDD  G+SISP+G V
Subjt:  MELADNPKSVIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIGKV

A0A6J1KV36 uncharacterized protein LOC111496704 isoform X24.0e-2971.43Show/hide
Query:  MELADNPKSVIISGEVNNGLEKAV------ISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESIS
        ME ADNPKSVI SGEVNNG+EKAV      ISDQ+NRFQY TKPDSFIIDMDSFSN+ +KEIS +S +++NFSRKG LRGGNK+GQDHG  +D   ES+S
Subjt:  MELADNPKSVIISGEVNNGLEKAV------ISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESIS

Query:  PIGKV
        PIG V
Subjt:  PIGKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTGGCGGACAATCCAAAGTCGGTTATAATTTCTGGCGAAGTGAATAATGGGTTAGAAAAAGCAGTGATTTCCGATCAATCAAACAGATTTCAGTACAAAACGAA
ACCCGATAGCTTCATCATCGATATGGACAGTTTTTCCAACACTAACAGCAAGGAAATTTCTCACAATTCAAGAATTACAAAGAATTTTAGCAGAAAAGGAATGTTACGTG
GCGGAAACAAGATGGGGCAAGATCATGGTGACGGTGATGATGGGGCAGGAGAGTCCATCTCCCCAATAGGTAAAGTAACTTAA
mRNA sequenceShow/hide mRNA sequence
TTTTCCTAAGAAAAGAAAAAAAAGAAAAAAGGAAAAAACTTCTCCCATGTGTTAAATTTCAATCACATAATAATGATATATATATATATATATATATATAATGCAGGGGC
AAAGTCTTAAAATTTCCCAATTCATTCTGTTTTCTTTTTCCTCTGTTTCTCATCGACGCTTCTTCCCGGATTCTTTCCTCCGCGCTTAAATAGAAGAATCGTCTTCATCT
GCAACTTGCACAAAGCAGTCCAAATCAAAATCAATCAGATTTCAGATCTCTTGTGTGAGAAAGAATACTGTAATTCGTATTCGTACCTATTGATTGTACCAGCTTACAAG
GAGAGAAAGAAAGACGAAGAAGGATCTTTCTGAGTTCTCCAATCTCTTCCTATAAATTCAAACTCATCTTCCTTCATTTCTTGCTTCAATGGAATTGGCGGACAATCCAA
AGTCGGTTATAATTTCTGGCGAAGTGAATAATGGGTTAGAAAAAGCAGTGATTTCCGATCAATCAAACAGATTTCAGTACAAAACGAAACCCGATAGCTTCATCATCGAT
ATGGACAGTTTTTCCAACACTAACAGCAAGGAAATTTCTCACAATTCAAGAATTACAAAGAATTTTAGCAGAAAAGGAATGTTACGTGGCGGAAACAAGATGGGGCAAGA
TCATGGTGACGGTGATGATGGGGCAGGAGAGTCCATCTCCCCAATAGGTAAAGTAACTTAA
Protein sequenceShow/hide protein sequence
MELADNPKSVIISGEVNNGLEKAVISDQSNRFQYKTKPDSFIIDMDSFSNTNSKEISHNSRITKNFSRKGMLRGGNKMGQDHGDGDDGAGESISPIGKVT