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Lsi01G004030 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G004030
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr01:3446639..3447653
RNA-Seq ExpressionLsi01G004030
SyntenyLsi01G004030
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594650.1 hypothetical protein SDJN03_11203, partial [Cucurbita argyrosperma subsp. sororia]9.1e-2970.48Show/hide
Query:  GGSNTLEKQAVV----GREELGGGG---GTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILKVE
        G ++TLEKQAVV     REELGGGG   G LSHEI  S AHG  G ERLSFRR+SFKRS Q CSWYLDPRKIF+ CATLSC+GTM+LIY AFSSG+L   
Subjt:  GGSNTLEKQAVV----GREELGGGG---GTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILKVE

Query:  ESELD
        ESEL+
Subjt:  ESELD
XP_008439956.1 PREDICTED: uncharacterized protein LOC103484588 isoform X1 [Cucumis melo]1.1e-3479.63Show/hide
Query:  GLGGGSNTLEKQAVVGREEL---GGGG---GTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILK
        G GGGS+TLEKQAVVGREEL   G GG   G LSHE  IS+   S GAE+LS RRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYL FSSG+LK
Subjt:  GLGGGSNTLEKQAVVGREEL---GGGG---GTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILK

Query:  VEESELDS
        VEESEL S
Subjt:  VEESELDS
XP_008439957.1 PREDICTED: uncharacterized protein LOC103484588 isoform X2 [Cucumis melo]1.1e-3479.63Show/hide
Query:  GLGGGSNTLEKQAVVGREEL---GGGG---GTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILK
        G GGGS+TLEKQAVVGREEL   G GG   G LSHE  IS+   S GAE+LS RRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYL FSSG+LK
Subjt:  GLGGGSNTLEKQAVVGREEL---GGGG---GTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILK

Query:  VEESELDS
        VEESEL S
Subjt:  VEESELDS
XP_011658165.1 uncharacterized protein LOC105435952 [Cucumis sativus]1.0e-3280Show/hide
Query:  GGGSNTLEKQAVVGREELGGGGGTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILKVEESELDS
        GGGS+TLEKQAVVGREEL    G LSHE  IS+   S GAE+LS RRNSFKRS QPCSWYLDPRKIFLFCATLSCVGTMLLIYL FSSG+LKVEESE  S
Subjt:  GGGSNTLEKQAVVGREELGGGGGTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILKVEESELDS
XP_038881480.1 uncharacterized protein LOC120073002 isoform X1 [Benincasa hispida]2.4e-3779.82Show/hide
Query:  VAGLGGGSNTLEKQAVVGREEL-----GGGGGTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGIL
        ++ +GGGS+ LEKQAVVG EEL     GGGGG LSHEI IS  H SGGAERLSFRRNS KRSPQ CSWYLDPRKIFLFCATLSCVGTMLLIYLAFS G+L
Subjt:  VAGLGGGSNTLEKQAVVGREEL-----GGGGGTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGIL

Query:  KVEESELDS
        KVEE+ELDS
Subjt:  KVEESELDS
TrEMBL top hitse value%identityAlignment
A0A0A0KN31 Uncharacterized protein5.0e-3380Show/hide
Query:  GGGSNTLEKQAVVGREELGGGGGTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILKVEESELDS
        GGGS+TLEKQAVVGREEL    G LSHE  IS+   S GAE+LS RRNSFKRS QPCSWYLDPRKIFLFCATLSCVGTMLLIYL FSSG+LKVEESE  S
Subjt:  GGGSNTLEKQAVVGREELGGGGGTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILKVEESELDS
A0A1S3B0M0 uncharacterized protein LOC103484588 isoform X15.3e-3579.63Show/hide
Query:  GLGGGSNTLEKQAVVGREEL---GGGG---GTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILK
        G GGGS+TLEKQAVVGREEL   G GG   G LSHE  IS+   S GAE+LS RRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYL FSSG+LK
Subjt:  GLGGGSNTLEKQAVVGREEL---GGGG---GTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILK

Query:  VEESELDS
        VEESEL S
Subjt:  VEESELDS
A0A1S3B0R1 uncharacterized protein LOC103484588 isoform X25.3e-3579.63Show/hide
Query:  GLGGGSNTLEKQAVVGREEL---GGGG---GTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILK
        G GGGS+TLEKQAVVGREEL   G GG   G LSHE  IS+   S GAE+LS RRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYL FSSG+LK
Subjt:  GLGGGSNTLEKQAVVGREEL---GGGG---GTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILK

Query:  VEESELDS
        VEESEL S
Subjt:  VEESELDS
A0A6J1EJ33 uncharacterized protein LOC111433776 isoform X14.4e-2970.48Show/hide
Query:  GGSNTLEKQAVV----GREELGGGG---GTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILKVE
        G ++TLEKQAVV     REELGGGG   G LSHEI  S AHG  G ERLSFRR+SFKRS Q CSWYLDPRKIF+ CATLSC+GTM+LIY AFSSG+L   
Subjt:  GGSNTLEKQAVV----GREELGGGG---GTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILKVE

Query:  ESELD
        ESEL+
Subjt:  ESELD
A0A6J1KL18 uncharacterized protein LOC111496704 isoform X16.3e-2869.52Show/hide
Query:  GGSNTLEKQAVV----GREELGGGG---GTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILKVE
        G ++TLEKQAVV      EE+GGGG   G LSHEI  S AHG GG ER SFRR SFKRS Q CSWYLDPRKIF+FCATLSC+GTM+LIY AFSSG+L   
Subjt:  GGSNTLEKQAVV----GREELGGGG---GTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILKVE

Query:  ESELD
        ESEL+
Subjt:  ESELD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G21215.1 unknown protein2.3e-0639.22Show/hide
Query:  GSNTLEKQAVVGREELGGGGGTLS--------HEIPISNAHGSGG--------AERLSF-RRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLA
        GS+T EK + VG  E  G   T +        H+I ++ A  + G          R  F R++SFKRS    SW LDP+KI LF ATLS +G++LLI   
Subjt:  GSNTLEKQAVVGREELGGGGGTLS--------HEIPISNAHGSGG--------AERLSF-RRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLA

Query:  FS
         S
Subjt:  FS
AT4G21215.2 unknown protein2.3e-0639.22Show/hide
Query:  GSNTLEKQAVVGREELGGGGGTLS--------HEIPISNAHGSGG--------AERLSF-RRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLA
        GS+T EK + VG  E  G   T +        H+I ++ A  + G          R  F R++SFKRS    SW LDP+KI LF ATLS +G++LLI   
Subjt:  GSNTLEKQAVVGREELGGGGGTLS--------HEIPISNAHGSGG--------AERLSF-RRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLA

Query:  FS
         S
Subjt:  FS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAATGTCTCGGTGTGGCAGGACTAGGAGGAGGGTCGAACACGCTCGAAAAGCAGGCGGTGGTGGGCAGAGAAGAATTGGGTGGCGGCGGCGGCACACTGAGCCA
CGAGATACCGATTAGTAATGCCCACGGCAGCGGCGGCGCCGAAAGGCTGAGCTTTAGAAGAAACAGCTTCAAGCGGTCTCCACAACCTTGCAGCTGGTACTTGGACCCCA
GGAAGATTTTTTTGTTCTGCGCCACACTGTCGTGCGTGGGAACTATGTTGCTGATATACTTGGCATTTTCATCTGGGATTCTCAAAGTAGAAGAAAGCGAGTTGGATTCA
TAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAATGTCTCGGTGTGGCAGGACTAGGAGGAGGGTCGAACACGCTCGAAAAGCAGGCGGTGGTGGGCAGAGAAGAATTGGGTGGCGGCGGCGGCACACTGAGCCA
CGAGATACCGATTAGTAATGCCCACGGCAGCGGCGGCGCCGAAAGGCTGAGCTTTAGAAGAAACAGCTTCAAGCGGTCTCCACAACCTTGCAGCTGGTACTTGGACCCCA
GGAAGATTTTTTTGTTCTGCGCCACACTGTCGTGCGTGGGAACTATGTTGCTGATATACTTGGCATTTTCATCTGGGATTCTCAAAGTAGAAGAAAGCGAGTTGGATTCA
TAGAGGTCAACAGTCCAAACCGTTAGGTGACAAATTCTTTTTTTTTTTTTTTTTT
Protein sequenceShow/hide protein sequence
MKKCLGVAGLGGGSNTLEKQAVVGREELGGGGGTLSHEIPISNAHGSGGAERLSFRRNSFKRSPQPCSWYLDPRKIFLFCATLSCVGTMLLIYLAFSSGILKVEESELDS