; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G004050 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G004050
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontyrosyl-DNA phosphodiesterase 1
Genome locationchr01:3455753..3457523
RNA-Seq ExpressionLsi01G004050
SyntenyLsi01G004050
Gene Ontology termsGO:0000012 - single strand break repair (biological process)
GO:0006302 - double-strand break repair (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0017005 - 3'-tyrosyl-DNA phosphodiesterase activity (molecular function)
InterPro domainsIPR010347 - Tyrosyl-DNA phosphodiesterase I


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439959.1 PREDICTED: tyrosyl-DNA phosphodiesterase 1 isoform X2 [Cucumis melo]1.6e-6983.93Show/hide
Query:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC
        GYAAGNAIPSPLKNVEKGFLR              HAMPHIKTFARYNGQKLAWLVLTSSNLS+AAWGALQKNNSQLMIRSYELGVLFLP+K  DCSFSC
Subjt:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC

Query:  TKSGGSAQNK---SRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPS
        TK+GGSAQNK   SRPSE+LE KTELVTLAWQE++KRESLSEVIQLPIPYELPPQPYGPQGQA LIPS
Subjt:  TKSGGSAQNK---SRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPS

XP_022978029.1 tyrosyl-DNA phosphodiesterase 1 isoform X1 [Cucurbita maxima]7.6e-6781.44Show/hide
Query:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC
        GYAAGNAIPSPLKNV+KGFLR              HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLP+K  D SFSC
Subjt:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC

Query:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW
        TKSGGSAQNKSRPSE+LEEKTELVTLAWQE++KRESLSEVIQLP+PYELPPQPYGPQ     +P  W
Subjt:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW

XP_022978031.1 tyrosyl-DNA phosphodiesterase 1 isoform X2 [Cucurbita maxima]7.6e-6781.44Show/hide
Query:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC
        GYAAGNAIPSPLKNV+KGFLR              HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLP+K  D SFSC
Subjt:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC

Query:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW
        TKSGGSAQNKSRPSE+LEEKTELVTLAWQE++KRESLSEVIQLP+PYELPPQPYGPQ     +P  W
Subjt:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW

XP_023544483.1 tyrosyl-DNA phosphodiesterase 1 isoform X1 [Cucurbita pepo subsp. pepo]1.5e-6782.63Show/hide
Query:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC
        GYAAGNAIPSPLKNVEKGFLR              HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLP+K  D SFSC
Subjt:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC

Query:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW
        TKSGGSAQNKSRPSE+LEEKTELVTLAWQE+RKRESLSEVIQLP+PYELPPQPYGPQ     +P  W
Subjt:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW

XP_023544484.1 tyrosyl-DNA phosphodiesterase 1 isoform X2 [Cucurbita pepo subsp. pepo]1.5e-6782.63Show/hide
Query:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC
        GYAAGNAIPSPLKNVEKGFLR              HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLP+K  D SFSC
Subjt:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC

Query:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW
        TKSGGSAQNKSRPSE+LEEKTELVTLAWQE+RKRESLSEVIQLP+PYELPPQPYGPQ     +P  W
Subjt:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW

TrEMBL top hitse value%identityAlignment
A0A1S3B014 tyrosyl-DNA phosphodiesterase 1 isoform X27.9e-7083.93Show/hide
Query:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC
        GYAAGNAIPSPLKNVEKGFLR              HAMPHIKTFARYNGQKLAWLVLTSSNLS+AAWGALQKNNSQLMIRSYELGVLFLP+K  DCSFSC
Subjt:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC

Query:  TKSGGSAQNK---SRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPS
        TK+GGSAQNK   SRPSE+LE KTELVTLAWQE++KRESLSEVIQLPIPYELPPQPYGPQGQA LIPS
Subjt:  TKSGGSAQNK---SRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPS

A0A6J1GE46 tyrosyl-DNA phosphodiesterase 1 isoform X24.8e-6782.04Show/hide
Query:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC
        GYAAGNAIPSPLKNVEKGFLR              HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLP+K  D SFSC
Subjt:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC

Query:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW
        TKSGGSAQNKSRPSE+LEEKTELVTLAWQE+RK ESLSEVIQLP+PYELPPQPYGPQ     +P  W
Subjt:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW

A0A6J1GF28 tyrosyl-DNA phosphodiesterase 1 isoform X14.8e-6782.04Show/hide
Query:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC
        GYAAGNAIPSPLKNVEKGFLR              HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLP+K  D SFSC
Subjt:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC

Query:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW
        TKSGGSAQNKSRPSE+LEEKTELVTLAWQE+RK ESLSEVIQLP+PYELPPQPYGPQ     +P  W
Subjt:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW

A0A6J1ILM7 tyrosyl-DNA phosphodiesterase 1 isoform X23.7e-6781.44Show/hide
Query:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC
        GYAAGNAIPSPLKNV+KGFLR              HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLP+K  D SFSC
Subjt:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC

Query:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW
        TKSGGSAQNKSRPSE+LEEKTELVTLAWQE++KRESLSEVIQLP+PYELPPQPYGPQ     +P  W
Subjt:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW

A0A6J1INX7 tyrosyl-DNA phosphodiesterase 1 isoform X13.7e-6781.44Show/hide
Query:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC
        GYAAGNAIPSPLKNV+KGFLR              HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLP+K  D SFSC
Subjt:  GYAAGNAIPSPLKNVEKGFLRN-------------HAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSC

Query:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW
        TKSGGSAQNKSRPSE+LEEKTELVTLAWQE++KRESLSEVIQLP+PYELPPQPYGPQ     +P  W
Subjt:  TKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW

SwissProt top hitse value%identityAlignment
Q4G056 Tyrosyl-DNA phosphodiesterase 18.0e-1934.76Show/hide
Query:  GYAAGNAIPSPLKNVEKGFL--------------RNHAMPHIKTFARYNG--QKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCS
        GY AG ++P  ++  EK                 R++AMPHIKT+ R +    KLAW ++TS+NLSKAAWGAL+KN +QLMIRSYELGVLFLP      +
Subjt:  GYAAGNAIPSPLKNVEKGFL--------------RNHAMPHIKTFARYNG--QKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCS

Query:  FSCTKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCWQLTLLMYPGL-GTVGIP
        F   +   S+ ++   S                             P+PY+LPP+ YG + +    P  W +  +  P   G + +P
Subjt:  FSCTKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCWQLTLLMYPGL-GTVGIP

Q8BJ37 Tyrosyl-DNA phosphodiesterase 14.0e-1834.76Show/hide
Query:  GYAAGNAIPSPLKNVEKGFL--------------RNHAMPHIKTFARYNG--QKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCS
        GY AG ++P  ++  EK                 R++AMPHIKT+ R +    KLAW ++TS+NLSKAAWGAL+KN +QLMIRSYELGVLFLP      +
Subjt:  GYAAGNAIPSPLKNVEKGFL--------------RNHAMPHIKTFARYNG--QKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCS

Query:  FSCTKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCWQLTLLMYPGL-GTVGIP
        F                        L T   ++     S       P+PY+LPP+ Y  + +    P  W +  +  P   G + +P
Subjt:  FSCTKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCWQLTLLMYPGL-GTVGIP

Q8H1D9 Tyrosyl-DNA phosphodiesterase 19.1e-4759.41Show/hide
Query:  GYAAGNAIPSPLKNVEKGFL-------------RNHAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPK--KGHDCSF
        GYAAGNAIPSPLKNVEK FL             R  AMPHIKTF RYN QK+AW +LTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLP   K   C F
Subjt:  GYAAGNAIPSPLKNVEKGFL-------------RNHAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPK--KGHDCSF

Query:  SCTKSGGSAQN-KSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW
        SCT+S  S    K    + +E++++LVT+ WQ DR    L E+I LP+PY+LPP+PY P+     +P  W
Subjt:  SCTKSGGSAQN-KSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW

Q9NUW8 Tyrosyl-DNA phosphodiesterase 11.8e-1834.76Show/hide
Query:  GYAAGNAIPSPLKNVEK-GFL-------------RNHAMPHIKTFARYNG--QKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCS
        GY AG ++P  ++  EK  +L             R++AMPHIKT+ R +    K+AW ++TS+NLSKAAWGAL+KN +QLMIRSYELGVLFLP      S
Subjt:  GYAAGNAIPSPLKNVEK-GFL-------------RNHAMPHIKTFARYNG--QKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCS

Query:  FSCTKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCWQLTLLMYPGL-GTVGIP
        F   +   +                             S   +   P+PY+LPP+ YG + +    P  W +  +  P   G + +P
Subjt:  FSCTKSGGSAQNKSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCWQLTLLMYPGL-GTVGIP

Q9TXV7 Probable tyrosyl-DNA phosphodiesterase2.3e-1037.37Show/hide
Query:  RNHAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGAL----QKNNSQLMIRSYELGVLFLPKKGHDCSFSCTKSGGSAQNKSRPSEHLEEKTELVTLAW
        R +A+PH KT+ +Y+ +   W +LTS+NLSKAAWG +     KN  QLMIRS+E+GVL       +  F       SA ++   ++   EK +++   W
Subjt:  RNHAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGAL----QKNNSQLMIRSYELGVLFLPKKGHDCSFSCTKSGGSAQNKSRPSEHLEEKTELVTLAW

Arabidopsis top hitse value%identityAlignment
AT5G15170.1 tyrosyl-DNA phosphodiesterase-related6.4e-4859.41Show/hide
Query:  GYAAGNAIPSPLKNVEKGFL-------------RNHAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPK--KGHDCSF
        GYAAGNAIPSPLKNVEK FL             R  AMPHIKTF RYN QK+AW +LTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLP   K   C F
Subjt:  GYAAGNAIPSPLKNVEKGFL-------------RNHAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPK--KGHDCSF

Query:  SCTKSGGSAQN-KSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW
        SCT+S  S    K    + +E++++LVT+ WQ DR    L E+I LP+PY+LPP+PY P+     +P  W
Subjt:  SCTKSGGSAQN-KSRPSEHLEEKTELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCATGGTTATGCTGCTGGAAATGCCATTCCCAGTCCATTAAAGAACGTGGAGAAGGGATTTTTGAGAAATCATGCAATGCCGCACATAAAGACATTTGCCCGTTA
TAATGGTCAAAAACTTGCTTGGTTAGTGCTAACGTCATCTAACCTCAGCAAAGCTGCCTGGGGAGCACTTCAGAAGAACAATTCTCAGCTAATGATTCGTTCTTACGAGC
TTGGGGTCCTCTTTCTTCCTAAAAAAGGACATGATTGCAGTTTTTCTTGTACCAAGAGTGGAGGTTCAGCACAGAACAAGTCAAGACCATCAGAACATTTAGAAGAAAAA
ACAGAACTGGTGACATTGGCTTGGCAAGAAGACAGGAAAAGAGAATCATTGTCTGAAGTAATTCAATTGCCTATACCTTATGAACTCCCTCCCCAGCCATATGGCCCTCA
AGGTCAGGCAGCGCTCATTCCTTCATGTTGGCAACTTACTTTACTAATGTACCCTGGTCTTGGGACCGTCGGTATACCCAAAAAGATGTCCACGGTGCGGTTTGGCCACG
TCAAGTTCAACTTTATGCTTCCTAGGATTCTTGATATCCTCTTTCCCCGCCAAGTATTTATTAAACCTAGGGTTCATGTGGACGTGAGATATTATATCATTGACGATGGC
GTGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGCATGGTTATGCTGCTGGAAATGCCATTCCCAGTCCATTAAAGAACGTGGAGAAGGGATTTTTGAGAAATCATGCAATGCCGCACATAAAGACATTTGCCCGTTA
TAATGGTCAAAAACTTGCTTGGTTAGTGCTAACGTCATCTAACCTCAGCAAAGCTGCCTGGGGAGCACTTCAGAAGAACAATTCTCAGCTAATGATTCGTTCTTACGAGC
TTGGGGTCCTCTTTCTTCCTAAAAAAGGACATGATTGCAGTTTTTCTTGTACCAAGAGTGGAGGTTCAGCACAGAACAAGTCAAGACCATCAGAACATTTAGAAGAAAAA
ACAGAACTGGTGACATTGGCTTGGCAAGAAGACAGGAAAAGAGAATCATTGTCTGAAGTAATTCAATTGCCTATACCTTATGAACTCCCTCCCCAGCCATATGGCCCTCA
AGGTCAGGCAGCGCTCATTCCTTCATGTTGGCAACTTACTTTACTAATGTACCCTGGTCTTGGGACCGTCGGTATACCCAAAAAGATGTCCACGGTGCGGTTTGGCCACG
TCAAGTTCAACTTTATGCTTCCTAGGATTCTTGATATCCTCTTTCCCCGCCAAGTATTTATTAAACCTAGGGTTCATGTGGACGTGAGATATTATATCATTGACGATGGC
GTGATGTAG
Protein sequenceShow/hide protein sequence
MWHGYAAGNAIPSPLKNVEKGFLRNHAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPKKGHDCSFSCTKSGGSAQNKSRPSEHLEEK
TELVTLAWQEDRKRESLSEVIQLPIPYELPPQPYGPQGQAALIPSCWQLTLLMYPGLGTVGIPKKMSTVRFGHVKFNFMLPRILDILFPRQVFIKPRVHVDVRYYIIDDG
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