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Lsi01G004110 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G004110
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionHomeobox-leucine zipper protein
Genome locationchr01:3510514..3513982
RNA-Seq ExpressionLsi01G004110
SyntenyLsi01G004110
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0008289 - lipid binding (molecular function)
InterPro domainsIPR001356 - Homeobox domain
IPR009057 - Homeobox-like domain superfamily
IPR042160 - Homeobox-leucine zipper protein GLABRA2/ANL2/PDF2/ATML1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK13060.1 homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Cucumis melo var. makuwa]9.9e-4090.62Show/hide
Query:  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
        MFDPDMFD THHHML+ELENMRDD+FD KSGAEILE AC  D  QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Subjt:  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW

XP_004134971.1 homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Cucumis sativus]2.0e-4091.67Show/hide
Query:  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
        MFDPDMFD THHHML+ELENMRDD+FD KSGAEILE AC TD  QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Subjt:  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW

XP_008439968.1 PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Cucumis melo]9.9e-4090.62Show/hide
Query:  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
        MFDPDMFD THHHML+ELENMRDD+FD KSGAEILE AC  D  QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Subjt:  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW

XP_022926381.1 homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like [Cucurbita moschata]7.6e-4084.16Show/hide
Query:  MFDPDMFDTHHHMLD--------ELENMRDDEFDTKSGAEILEVACATDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKF
        MFDPDMFDTHHHMLD        ELEN+RDD+F+ KSGAE+LE AC +DQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKF
Subjt:  MFDPDMFDTHHHMLD--------ELENMRDDEFDTKSGAEILEVACATDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKF

Query:  W
        W
Subjt:  W

XP_038881455.1 homeobox-leucine zipper protein MERISTEM L1-like [Benincasa hispida]5.1e-4495.7Show/hide
Query:  MFDPDMFDTHHHMLDELENMRDDEFDTKSGAEILEVACATDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
        MFDPDMFDTHHHML+ELENMRDDEF+TKSGAEILE AC TDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Subjt:  MFDPDMFDTHHHMLDELENMRDDEFDTKSGAEILEVACATDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW

TrEMBL top hitse value%identityAlignment
A0A0A0KN23 Uncharacterized protein9.7e-4191.67Show/hide
Query:  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
        MFDPDMFD THHHML+ELENMRDD+FD KSGAEILE AC TD  QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Subjt:  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW

A0A1S3AZL7 homeobox-leucine zipper protein PROTODERMAL FACTOR 24.8e-4090.62Show/hide
Query:  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
        MFDPDMFD THHHML+ELENMRDD+FD KSGAEILE AC  D  QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Subjt:  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW

A0A5D3CNN9 Homeobox-leucine zipper protein PROTODERMAL FACTOR 24.8e-4090.62Show/hide
Query:  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
        MFDPDMFD THHHML+ELENMRDD+FD KSGAEILE AC  D  QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Subjt:  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW

A0A6J1EER9 homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like3.7e-4084.16Show/hide
Query:  MFDPDMFDTHHHMLD--------ELENMRDDEFDTKSGAEILEVACATDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKF
        MFDPDMFDTHHHMLD        ELEN+RDD+F+ KSGAE+LE AC +DQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKF
Subjt:  MFDPDMFDTHHHMLD--------ELENMRDDEFDTKSGAEILEVACATDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKF

Query:  W
        W
Subjt:  W

A0A6J1KQC5 homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like1.4e-3983.17Show/hide
Query:  MFDPDMFDTHHHMLD--------ELENMRDDEFDTKSGAEILEVACATDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKF
        MFDPDMFDTHHHMLD        ELEN+RDD+F+ KSGAEILE  C +DQQRSKKKRYNRHTQHQIQEME FFKECPHPDDKQRMELSRELGLEPLQVKF
Subjt:  MFDPDMFDTHHHMLD--------ELENMRDDEFDTKSGAEILEVACATDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKF

Query:  W
        W
Subjt:  W

SwissProt top hitse value%identityAlignment
Q0J9X2 Homeobox-leucine zipper protein ROC21.6e-2451.64Show/hide
Query:  PDMFDTH------------HHMLDEL-----------------ENMRDDEFDTKSGAEILEVACATDQ---QRSKKKRYNRHTQHQIQEMEAFFKECPHP
        P++ D H            HH+LD++                 + +  DEF++KSG+E ++     DQ   QR +KKRY+RHTQHQIQEMEAFFKECPHP
Subjt:  PDMFDTH------------HHMLDEL-----------------ENMRDDEFDTKSGAEILEVACATDQ---QRSKKKRYNRHTQHQIQEMEAFFKECPHP

Query:  DDKQRMELSRELGLEPLQVKFW
        DDKQR ELSRELGLEPLQVKFW
Subjt:  DDKQRMELSRELGLEPLQVKFW

Q6ZAR0 Homeobox-leucine zipper protein ROC12.6e-2271.79Show/hide
Query:  DEFDTKSGAEILEVA----CATDQ---QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
        DEF++KS +E ++ A       DQ   QR +KKRY+RHTQHQIQEMEAFFKECPHPDDKQR ELSRELGLEPLQVKFW
Subjt:  DEFDTKSGAEILEVA----CATDQ---QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW

Q8RWU4 Homeobox-leucine zipper protein MERISTEM L12.5e-2556.88Show/hide
Query:  MFDPDMFDTHHHMLD----------ELENMRDDEFDTKSGAEI-----LEVACATDQQR-SKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELG
        M+ P+MF++HHHM D           +    +++F+TKSGAE+     LE       QR +KKKRY+RHTQ QIQE+E+FFKECPHPDDKQR ELSREL 
Subjt:  MFDPDMFDTHHHMLD----------ELENMRDDEFDTKSGAEI-----LEVACATDQQR-SKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELG

Query:  LEPLQVKFW
        LEPLQVKFW
Subjt:  LEPLQVKFW

Q93V99 Homeobox-leucine zipper protein PROTODERMAL FACTOR 25.2e-2353.64Show/hide
Query:  MFDPDMFDTHHHMLD-----------ELENMRDDEFDTKSGAEIL------EVACATDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSREL
        M+ P+MF++ HHM D            +   R+D+F+TKSG E+       E      Q+ +KKKRY+RHTQ QIQE+E+FFKECPHPDDKQR ELSR+L
Subjt:  MFDPDMFDTHHHMLD-----------ELENMRDDEFDTKSGAEIL------EVACATDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSREL

Query:  GLEPLQVKFW
         LEPLQVKFW
Subjt:  GLEPLQVKFW

Q94C37 Homeobox-leucine zipper protein HDG25.2e-2357.66Show/hide
Query:  MFDPDMF-------DTHHHMLDELEN-----MRDDEFD---TKSGAEILEVACATDQ---QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRE
        MF+P+M        D+++H  +  +N     +RDDEFD   TKSG+E  E     DQ     +KKKRY+RHTQ QIQEMEAFFKECPHPDDKQR +LSRE
Subjt:  MFDPDMF-------DTHHHMLDELEN-----MRDDEFD---TKSGAEILEVACATDQ---QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRE

Query:  LGLEPLQVKFW
        L LEPLQVKFW
Subjt:  LGLEPLQVKFW

Arabidopsis top hitse value%identityAlignment
AT1G05230.1 homeodomain GLABROUS 23.7e-2457.66Show/hide
Query:  MFDPDMF-------DTHHHMLDELEN-----MRDDEFD---TKSGAEILEVACATDQ---QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRE
        MF+P+M        D+++H  +  +N     +RDDEFD   TKSG+E  E     DQ     +KKKRY+RHTQ QIQEMEAFFKECPHPDDKQR +LSRE
Subjt:  MFDPDMF-------DTHHHMLDELEN-----MRDDEFD---TKSGAEILEVACATDQ---QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRE

Query:  LGLEPLQVKFW
        L LEPLQVKFW
Subjt:  LGLEPLQVKFW

AT1G05230.2 homeodomain GLABROUS 23.7e-2457.66Show/hide
Query:  MFDPDMF-------DTHHHMLDELEN-----MRDDEFD---TKSGAEILEVACATDQ---QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRE
        MF+P+M        D+++H  +  +N     +RDDEFD   TKSG+E  E     DQ     +KKKRY+RHTQ QIQEMEAFFKECPHPDDKQR +LSRE
Subjt:  MFDPDMF-------DTHHHMLDELEN-----MRDDEFD---TKSGAEILEVACATDQ---QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRE

Query:  LGLEPLQVKFW
        L LEPLQVKFW
Subjt:  LGLEPLQVKFW

AT1G05230.3 homeodomain GLABROUS 23.7e-2457.66Show/hide
Query:  MFDPDMF-------DTHHHMLDELEN-----MRDDEFD---TKSGAEILEVACATDQ---QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRE
        MF+P+M        D+++H  +  +N     +RDDEFD   TKSG+E  E     DQ     +KKKRY+RHTQ QIQEMEAFFKECPHPDDKQR +LSRE
Subjt:  MFDPDMF-------DTHHHMLDELEN-----MRDDEFD---TKSGAEILEVACATDQ---QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRE

Query:  LGLEPLQVKFW
        L LEPLQVKFW
Subjt:  LGLEPLQVKFW

AT4G21750.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein1.8e-2656.88Show/hide
Query:  MFDPDMFDTHHHMLD----------ELENMRDDEFDTKSGAEI-----LEVACATDQQR-SKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELG
        M+ P+MF++HHHM D           +    +++F+TKSGAE+     LE       QR +KKKRY+RHTQ QIQE+E+FFKECPHPDDKQR ELSREL 
Subjt:  MFDPDMFDTHHHMLD----------ELENMRDDEFDTKSGAEI-----LEVACATDQQR-SKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELG

Query:  LEPLQVKFW
        LEPLQVKFW
Subjt:  LEPLQVKFW

AT4G21750.2 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein1.8e-2656.88Show/hide
Query:  MFDPDMFDTHHHMLD----------ELENMRDDEFDTKSGAEI-----LEVACATDQQR-SKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELG
        M+ P+MF++HHHM D           +    +++F+TKSGAE+     LE       QR +KKKRY+RHTQ QIQE+E+FFKECPHPDDKQR ELSREL 
Subjt:  MFDPDMFDTHHHMLD----------ELENMRDDEFDTKSGAEI-----LEVACATDQQR-SKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELG

Query:  LEPLQVKFW
        LEPLQVKFW
Subjt:  LEPLQVKFW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGATCCAGATATGTTCGATACTCACCATCATATGCTTGACGAGTTGGAAAATATGAGAGATGATGAATTTGATACCAAATCAGGCGCAGAAATCTTAGAAGTTGC
TTGTGCAACTGACCAACAACGCTCTAAGAAGAAACGTTATAATCGTCATACACAACATCAAATCCAAGAAATGGAAGCATTCTTCAAAGAATGTCCTCACCCAGATGACA
AGCAGAGGATGGAGCTGAGCCGGGAGCTGGGGTTGGAGCCATTGCAAGTGAAGTTTTGGGTATTCTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATTATCTCAACTTCCTTTCATATTTTCTTTCCCATTTCTCTGATATCTTTTTTTCTTCCAAATTCCCACTCACAGAAACCCTTCATATCATTATTCCAACCTCCATTTGC
CTTGTGTTTCTTTCCCTCCCTTTCTTATTTCACTCTTAAGTCCTCTGGCTATTACATTACACTCTTCCAACTCTCTTTTCCCATAATTCTTACAATAATATATTGTTATA
TAATTACATTCCCAAACCAAACCCTTTTCCCTCTTTTTTCCACTATCATGATTCTGCCTTTCCCTTAACCTCCCTTCCTGCTTCATTTTCTGCCCCAATCCAACCAGCCT
GGAAGAAGGTTATTTATTGTATATTGGAGAGCGAAGATGTTTGATCCAGATATGTTCGATACTCACCATCATATGCTTGACGAGTTGGAAAATATGAGAGATGATGAATT
TGATACCAAATCAGGCGCAGAAATCTTAGAAGTTGCTTGTGCAACTGACCAACAACGCTCTAAGAAGAAACGTTATAATCGTCATACACAACATCAAATCCAAGAAATGG
AAGCATTCTTCAAAGAATGTCCTCACCCAGATGACAAGCAGAGGATGGAGCTGAGCCGGGAGCTGGGGTTGGAGCCATTGCAAGTGAAGTTTTGGGTATTCTTGTAA
Protein sequenceShow/hide protein sequence
MFDPDMFDTHHHMLDELENMRDDEFDTKSGAEILEVACATDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWVFL