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Lsi01G004200 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G004200
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionExpression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.
Genome locationchr01:3563507..3563827
RNA-Seq ExpressionLsi01G004200
SyntenyLsi01G004200
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603773.1 hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sororia]2.3e-2969.91Show/hide
Query:  MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENND-------QMVKLRQQR
        + G +RR  P KN  QR+   SSC  ST  K SKEGN+RE+KIRMTKKEL+ELVGWLNMADSSFE VMARLVNVIS+QNG++++       QMVKLRQQR
Subjt:  MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENND-------QMVKLRQQR

Query:  SWRPSLQSIPEII
        SWRPSLQSIPEII
Subjt:  SWRPSLQSIPEII

KGN49118.1 hypothetical protein Csa_002843 [Cucumis sativus]1.0e-2972.9Show/hide
Query:  MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSL
        MEG    TPP+KNH QR+ +  S         SKE NLREVKIRMTKKEL+ELVGWLNMADSSFE VMARLVNVI+ QNG+ NNDQ+VKLRQQRSWRPSL
Subjt:  MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSL

Query:  QSIPEII
        QSIPE+I
Subjt:  QSIPEII

XP_008441100.1 PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo]1.3e-3583.65Show/hide
Query:  DRRTPPWKNHHQRK-PEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSI
        DRRTPP KNH QR+  EGSSCC       SKE NLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVI+DQNG+ NNDQ+VKLRQQRSWRPSLQSI
Subjt:  DRRTPPWKNHHQRK-PEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSI

Query:  PEII
        PEII
Subjt:  PEII

XP_022977330.1 uncharacterized protein LOC111477681 [Cucurbita maxima]2.5e-3173.45Show/hide
Query:  MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNG-------ENNDQMVKLRQQR
        + GGDRR  P KN  QR+    SC  ST  K SKEGNLRE+KIRMTKKEL+EL+GWLNMADSSFE VMARLVNVISDQNG       EN  QMVKLRQQR
Subjt:  MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNG-------ENNDQMVKLRQQR

Query:  SWRPSLQSIPEII
        SWRPSLQSIPEII
Subjt:  SWRPSLQSIPEII

XP_023544016.1 uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo]4.6e-3070.8Show/hide
Query:  MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENND-------QMVKLRQQR
        + GGDRR  P KN  QR+   +SC  ST  K SKEGNLRE+KIRMTKKEL+ELVGWLNMADSSFE VMARLVNVIS+ NG++++       QMVKLRQQR
Subjt:  MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENND-------QMVKLRQQR

Query:  SWRPSLQSIPEII
        SWRPSLQSIPEII
Subjt:  SWRPSLQSIPEII

TrEMBL top hitse value%identityAlignment
A0A0A0KHU7 Uncharacterized protein5.0e-3072.9Show/hide
Query:  MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSL
        MEG    TPP+KNH QR+ +  S         SKE NLREVKIRMTKKEL+ELVGWLNMADSSFE VMARLVNVI+ QNG+ NNDQ+VKLRQQRSWRPSL
Subjt:  MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSL

Query:  QSIPEII
        QSIPE+I
Subjt:  QSIPEII

A0A1S3B2N5 uncharacterized protein LOC1034853266.1e-3683.65Show/hide
Query:  DRRTPPWKNHHQRK-PEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSI
        DRRTPP KNH QR+  EGSSCC       SKE NLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVI+DQNG+ NNDQ+VKLRQQRSWRPSLQSI
Subjt:  DRRTPPWKNHHQRK-PEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSI

Query:  PEII
        PEII
Subjt:  PEII

A0A438EDR4 Uncharacterized protein2.4e-0852.24Show/hide
Query:  REVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPSLQSIPEI
        REVKI++TKKELEEL+  ++M   + EHV+A+L+      NG +ND+    ++QRSWRP+LQSIPE+
Subjt:  REVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPSLQSIPEI

A0A5D3CNX5 Uncharacterized protein6.1e-3683.65Show/hide
Query:  DRRTPPWKNHHQRK-PEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSI
        DRRTPP KNH QR+  EGSSCC       SKE NLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVI+DQNG+ NNDQ+VKLRQQRSWRPSLQSI
Subjt:  DRRTPPWKNHHQRK-PEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSI

Query:  PEII
        PEII
Subjt:  PEII

A0A6J1IM02 uncharacterized protein LOC1114776811.2e-3173.45Show/hide
Query:  MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNG-------ENNDQMVKLRQQR
        + GGDRR  P KN  QR+    SC  ST  K SKEGNLRE+KIRMTKKEL+EL+GWLNMADSSFE VMARLVNVISDQNG       EN  QMVKLRQQR
Subjt:  MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNG-------ENNDQMVKLRQQR

Query:  SWRPSLQSIPEII
        SWRPSLQSIPEII
Subjt:  SWRPSLQSIPEII

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G20340.1 Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.5.5e-0538.16Show/hide
Query:  KDSKEG-NLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPSLQSIPEI
        +DSK      E+KIR+TKK+L +L+  +N+ D +F+        +       NN    +  QQR WRP LQSIPE+
Subjt:  KDSKEG-NLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPSLQSIPEI

AT4G21920.1 unknown protein8.5e-0632.63Show/hide
Query:  HQRKPEGSSCCSSTNN----KDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPSLQSIPEI
        H    +G      T+N      S     RE+KIR+TKKELE+L+  + +   + E ++++L+    DQ G +   +    Q   W+P LQSIPE+
Subjt:  HQRKPEGSSCCSSTNN----KDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPSLQSIPEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGCGGCGACCGGAGGACTCCGCCGTGGAAGAACCACCATCAGAGAAAGCCTGAAGGTAGTTCTTGTTGTTCTAGTACGAACAACAAGGATTCAAAAGAAGGTAA
TTTGAGAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTGAACG
TTATTAGCGACCAAAATGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTTTGCAAAGCATTCCTGAGATAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGCGGCGACCGGAGGACTCCGCCGTGGAAGAACCACCATCAGAGAAAGCCTGAAGGTAGTTCTTGTTGTTCTAGTACGAACAACAAGGATTCAAAAGAAGGTAA
TTTGAGAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTGAACG
TTATTAGCGACCAAAATGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTTTGCAAAGCATTCCTGAGATAATTTGA
Protein sequenceShow/hide protein sequence
MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPSLQSIPEII