CuGenDBv2

Gene ID	Lsi01G004540
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	chaperonin-like RBCX protein 1, chloroplastic
Genome location	chr01:3783958..3785448
RNA-Seq Expression	Lsi01G004540
Synteny	Lsi01G004540
Gene Ontology terms	GO:0006950 - response to stress (biological process) GO:0009628 - response to abiotic stimulus (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0044183 - protein folding chaperone (molecular function)
InterPro domains	IPR003435 - Chaperonin-like RbcX IPR038052 - Chaperonin-like RbcX superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7026647.1 Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

5.2e-46

75.48

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Query:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ
        +HNFFTYVAVRIVTAQLEVALQLL   FNCSAML    LVLILVLVEQSYNPEA+ ELMEFLD HSLNDGDKFL++LMRESSRHKSL          + +
Subjt:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ

Query:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK
        I E       VRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D EK
Subjt:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK

XP_004134778.1 chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus]

1.2e-37

63.23

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Query:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ
        +HNFFTYVAVRIVTAQLE                              SYNPEAY ELMEFLD HSLNDGDKFLASLMRESSRHK+L          + +
Subjt:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ

Query:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK
        I E       VRSAYCKNDFEWDNLKRLAFKMVSESNTR+MREY+TETSPSDTEK
Subjt:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK

XP_008440039.1 PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo]

1.5e-37

63.23

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Query:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ
        +HNFFTYVAVRIVTAQLE                              SYNPEAY ELMEFLD HSLNDGDKFLASLMRESSRHKSL          + +
Subjt:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ

Query:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK
        I E       VRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK

XP_038881664.1 chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]

2.1e-39

65.81

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Query:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ
        +HNFFTYVAVRIVTAQLE                              SYNPEAYQELMEFLD HSLNDGDKFLASLMRESSRHKSL          + +
Subjt:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ

Query:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK
        I E       VRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK
Subjt:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK

XP_038881665.1 chaperonin-like RBCX protein 1, chloroplastic isoform X2 [Benincasa hispida]

2.1e-39

65.81

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Query:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ
        +HNFFTYVAVRIVTAQLE                              SYNPEAYQELMEFLD HSLNDGDKFLASLMRESSRHKSL          + +
Subjt:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ

Query:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK
        I E       VRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK
Subjt:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMZ4 Uncharacterized protein

5.6e-38

63.23

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Query:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ
        +HNFFTYVAVRIVTAQLE                              SYNPEAY ELMEFLD HSLNDGDKFLASLMRESSRHK+L          + +
Subjt:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ

Query:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK
        I E       VRSAYCKNDFEWDNLKRLAFKMVSESNTR+MREY+TETSPSDTEK
Subjt:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK

A0A1S3B054 uncharacterized protein LOC103484635

7.3e-38

63.23

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Query:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ
        +HNFFTYVAVRIVTAQLE                              SYNPEAY ELMEFLD HSLNDGDKFLASLMRESSRHKSL          + +
Subjt:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ

Query:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK
        I E       VRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK

A0A5D3CNU4 Chaperonin-like RBCX protein 1

7.3e-38

63.23

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Query:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ
        +HNFFTYVAVRIVTAQLE                              SYNPEAY ELMEFLD HSLNDGDKFLASLMRESSRHKSL          + +
Subjt:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ

Query:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK
        I E       VRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK

A0A6J1BTL5 chaperonin-like RBCX protein 1, chloroplastic

8.9e-36

61.94

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Query:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ
        +HNFFTYVAVRIV AQLE                              SYNPEA+ ELMEFLD HSLNDGDKFLASLMRESSRHKSL          + +
Subjt:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ

Query:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK
        I E       VRSAYCKNDFEWDNLKRLA KM SESNTRLMREYVTETSPS+TEK
Subjt:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK

A0A6J1KRH1 chaperonin-like RBCX protein 1, chloroplastic

4.9e-34

60.65

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Query:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ
        +HNFFTYVAVRIVTAQLE                              SYNPEA+ ELMEFLD HSLNDGDKFL++LMRESSRHKSL          + +
Subjt:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ

Query:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK
        I E       VRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D EK
Subjt:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK

SwissProt top hits

e value

%identity

Alignment

Q94AU9 Chaperonin-like RBCX protein 1, chloroplastic

8.3e-31

52.6

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Query:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ
        +H+FFTYVAVRIV+AQLE                              SYNPEAY EL EFLDT+S++DGDKF A+LMR SSRH +L          + +
Subjt:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ

Query:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
        I E       VRSAYCKNDFEWDN+KRLAFK V +SNTRLMREYV ETS  +T+
Subjt:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Arabidopsis top hits

e value

%identity

Alignment

AT4G04330.1 Chaperonin-like RbcX protein

5.9e-32

52.6

Show/hide

Query:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ
        +H+FFTYVAVRIV+AQLE                              SYNPEAY EL EFLDT+S++DGDKF A+LMR SSRH +L          + +
Subjt:  MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQ

Query:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
        I E       VRSAYCKNDFEWDN+KRLAFK V +SNTRLMREYV ETS  +T+
Subjt:  IYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Sequences

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CDS sequence

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mRNA sequence

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ATGCATAATTTCTTCACATATGTTGCTGTTAGGATAGTGACTGCGCAGCTTGAGGTTGCTCTTCAATTGCTTTTTACTCTTTTTAATTGCTCTGCCATGTTGTGTGGGTT
TCCATTGGTATTGATTCTTGTTCTGGTAGAGCAGAGCTATAATCCAGAGGCGTACCAGGAGTTAATGGAGTTTCTTGACACACATTCACTGAATGATGGGGACAAATTCC
TGGCCAGTTTGATGCGGGAATCGTCAAGGCATAAATCTCTTGGTAAAACCCAAATCTACTCTGTCTTTAGTTCGGCCCAAATCTACGAGTTCATTAGGGACCAAAAATGC
GTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTTAAAATGGTTAGTGAATCCAACACAAGACTTATGAGGGAATACGTGACGGA
GACAAGTCCATCAGATACCGAGAAGTGACAAAATTCTGCTCTGCATTTTCTTCACCTTTTGCATTTAAACAGGAGAGGATACATAGATCCAGTGTGTGTGATATGATATG
AGAGTAACAAAGAAGTAGCAAACCCAGTGATGGTATGGTAATATACGGAAACATTCATTCTGAATTCTTCTTGCGAGCTGCAAAATAATTTTATCGCAATTTAAATTACT
CAAAGGTTGCAAAGCTTTCAAAGTACTCACCTGTTGCAGAAGATTAACGACACCTCACCTGAAGTTCAGAAAGTTGTGAATCAGCAGCTCCAGTTTGAAACAATGTCTTG
TGGTTTGCACATCCATAAATAATACGGAAGACTCAGTAATTTGCTTAAAAGAAATCAGAGGAAACAATAAGATTTTGGGATGTGTAAGAACCAAAATATGGGATGTGAAT
GAGAATGCAATGCATTTCAGAACCAGACCTCAATGAGGCAAAGAGACAGTCAATGAATTCAGAAATGCTTTGGCTCACAGCAGAAGCTAATGCAAGAGACTTTTTGCTAA
CTTAACTTAGGGAAATAATTATAATCTGCATGATTAAAAGTGATATTGTTGGGGAATCAGTGGCTGGCTAACGTAGACACCAG

Protein sequence

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MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQIYEFIRDQKC
VRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK

Lsi01G004540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome