; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G004900 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G004900
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr01:4050212..4050748
RNA-Seq ExpressionLsi01G004900
SyntenyLsi01G004900
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXC73609.1 hypothetical protein L484_000264 [Morus notabilis]2.9e-0838.86Show/hide
Query:  EASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEPS-----SISHPHHDQLMMMKKKKKMMIKVPPTML
        + +H  VH SSIALLQERFRQL+++KE+REERE++++LS       ++      NN T  C   EPS     S  H HH  L+  + +       P   L
Subjt:  EASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEPS-----SISHPHHDQLMMMKKKKKMMIKVPPTML

Query:  TLLPQTSLSLSLTSSSSNHQPNNNNIPTL-MDLWPLPT---TSCDSAISFITKL-NDHHHDYSDSHIDVDTSLHL
        +L P    S S +         N+  P L M LWPL T        A S  + L +D  HDYS    DVDTSLHL
Subjt:  TLLPQTSLSLSLTSSSSNHQPNNNNIPTL-MDLWPLPT---TSCDSAISFITKL-NDHHHDYSDSHIDVDTSLHL

KAG6594702.1 hypothetical protein SDJN03_11255, partial [Cucurbita argyrosperma subsp. sororia]1.1e-2052.38Show/hide
Query:  VHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLS
        V  SSIALLQERFRQL+K+KEMREERE+V+LLSLS  PK H           NTCVLFEPS  +       MMM             MLT LPQTSLSL 
Subjt:  VHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLS

Query:  LTSSSSNHQPN---NNNIPTLMDLWPL------PTTSCDSAISFITKLNDHHHDYSDSHIDVDTSLHL
         TS S   +     + ++P LM+LWP+       ++SCDSAIS I+KL +H H+ SDS IDVDTSLHL
Subjt:  LTSSSSNHQPN---NNNIPTLMDLWPL------PTTSCDSAISFITKLNDHHHDYSDSHIDVDTSLHL

KGN49044.1 hypothetical protein Csa_002770 [Cucumis sativus]4.1e-5569.7Show/hide
Query:  MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFN----NNTNTCVLFEPS-SISHPHHDQLMMMKK
        MG EDI  + D+QEA+ V +HSSSIALLQERFRQL+K+KEMREE+EVVKLLSLSQYPKTH+CCSFFFN    N+TNTCV+FEPS S ++PHH+ +M MKK
Subjt:  MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFN----NNTNTCVLFEPS-SISHPHHDQLMMMKK

Query:  KK-KMMIKVPPTMLTLLPQTSLSLSLTSSSS---NHQPNNNNIPTLMDLWPLP------TTSCDSAISFITKLNDH-HHD----YSDSHIDVDTSLHL
        KK         TMLTLLPQTSLSLSLTSSSS   +HQ  +NNIPTLMDLWP+P      T+SCDSAISFITKLNDH HHD    Y DS I+VDTSLHL
Subjt:  KK-KMMIKVPPTMLTLLPQTSLSLSLTSSSS---NHQPNNNNIPTLMDLWPLP------TTSCDSAISFITKLNDH-HHD----YSDSHIDVDTSLHL

TYK12991.1 hypothetical protein E5676_scaffold255G005880 [Cucumis melo var. makuwa]3.5e-5471.07Show/hide
Query:  MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNN---NTNTCVLFEPS-SISHPHHDQLMMMKKK
        MG E+I  + D+QEAS V VHSSSIALLQERFRQL+K+KEMREEREVVKLLSLSQYPKTHSCCSFFFNN   NTNTCV+FEPS S S PHH+ +M MKKK
Subjt:  MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNN---NTNTCVLFEPS-SISHPHHDQLMMMKKK

Query:  K-KMMIKVPPTMLTLLPQTSLSLSLTSSSS---NHQPNNNNIPTLMDLWPLP------TTSCDSAISFITKLNDH-HHD----YSDSHIDVDTSLHL
        K         TMLTLLPQTSLSLSLT+SSS   +HQ  +NNIPTLMDLWP+P      ++SCDSAISFI+KLNDH HHD    Y DS I+VDTSLHL
Subjt:  K-KMMIKVPPTMLTLLPQTSLSLSLTSSSS---NHQPNNNNIPTLMDLWPLP------TTSCDSAISFITKLNDH-HHD----YSDSHIDVDTSLHL

XP_015878993.1 uncharacterized protein LOC107415217 [Ziziphus jujuba]9.9e-0937.5Show/hide
Query:  VAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLS
        +A+H SSIALLQERFRQL++MKEMRE +E++++L +    +  S      + N N  + FEP   S P+ D L              P +  +  Q SLS
Subjt:  VAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLS

Query:  LSLTSSSSNHQPNNNNI-------PTLMDLWPLPTTSCDSAISFITKLNDHHHDYSDSHIDVDTSLHL
        L     S+ +  +   I       PTLM+LWP+  T   S  S  +  N +  + SDS  DVDTSLHL
Subjt:  LSLTSSSSNHQPNNNNI-------PTLMDLWPLPTTSCDSAISFITKLNDHHHDYSDSHIDVDTSLHL

TrEMBL top hitse value%identityAlignment
A0A0A0KJS5 Uncharacterized protein2.0e-5569.7Show/hide
Query:  MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFN----NNTNTCVLFEPS-SISHPHHDQLMMMKK
        MG EDI  + D+QEA+ V +HSSSIALLQERFRQL+K+KEMREE+EVVKLLSLSQYPKTH+CCSFFFN    N+TNTCV+FEPS S ++PHH+ +M MKK
Subjt:  MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFN----NNTNTCVLFEPS-SISHPHHDQLMMMKK

Query:  KK-KMMIKVPPTMLTLLPQTSLSLSLTSSSS---NHQPNNNNIPTLMDLWPLP------TTSCDSAISFITKLNDH-HHD----YSDSHIDVDTSLHL
        KK         TMLTLLPQTSLSLSLTSSSS   +HQ  +NNIPTLMDLWP+P      T+SCDSAISFITKLNDH HHD    Y DS I+VDTSLHL
Subjt:  KK-KMMIKVPPTMLTLLPQTSLSLSLTSSSS---NHQPNNNNIPTLMDLWPLP------TTSCDSAISFITKLNDH-HHD----YSDSHIDVDTSLHL

A0A5D3CME5 Uncharacterized protein1.7e-5471.07Show/hide
Query:  MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNN---NTNTCVLFEPS-SISHPHHDQLMMMKKK
        MG E+I  + D+QEAS V VHSSSIALLQERFRQL+K+KEMREEREVVKLLSLSQYPKTHSCCSFFFNN   NTNTCV+FEPS S S PHH+ +M MKKK
Subjt:  MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNN---NTNTCVLFEPS-SISHPHHDQLMMMKKK

Query:  K-KMMIKVPPTMLTLLPQTSLSLSLTSSSS---NHQPNNNNIPTLMDLWPLP------TTSCDSAISFITKLNDH-HHD----YSDSHIDVDTSLHL
        K         TMLTLLPQTSLSLSLT+SSS   +HQ  +NNIPTLMDLWP+P      ++SCDSAISFI+KLNDH HHD    Y DS I+VDTSLHL
Subjt:  K-KMMIKVPPTMLTLLPQTSLSLSLTSSSS---NHQPNNNNIPTLMDLWPLP------TTSCDSAISFITKLNDH-HHD----YSDSHIDVDTSLHL

A0A6P3ZU56 uncharacterized protein LOC1074152174.8e-0937.5Show/hide
Query:  VAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLS
        +A+H SSIALLQERFRQL++MKEMRE +E++++L +    +  S      + N N  + FEP   S P+ D L              P +  +  Q SLS
Subjt:  VAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLS

Query:  LSLTSSSSNHQPNNNNI-------PTLMDLWPLPTTSCDSAISFITKLNDHHHDYSDSHIDVDTSLHL
        L     S+ +  +   I       PTLM+LWP+  T   S  S  +  N +  + SDS  DVDTSLHL
Subjt:  LSLTSSSSNHQPNNNNI-------PTLMDLWPLPTTSCDSAISFITKLNDHHHDYSDSHIDVDTSLHL

W9QDY3 Uncharacterized protein6.9e-0837.06Show/hide
Query:  EASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQ
        + +H  VH SSIALLQERFRQL+++KE+REERE++++LS       ++      NN T  C        S  HH    ++  + +     P   L+L P 
Subjt:  EASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQ

Query:  TSLSLSLTSSSSNHQPNNNNIPTL-MDLWPLPT---TSCDSAISFITKL-NDHHHDYSDSHIDVDTSLHL
           S S +         N+  P L M LWPL T        A S  + L +D  HDYS    DVDTSLHL
Subjt:  TSLSLSLTSSSSNHQPNNNNIPTL-MDLWPLPT---TSCDSAISFITKL-NDHHHDYSDSHIDVDTSLHL

W9SFE8 Uncharacterized protein1.4e-0838.86Show/hide
Query:  EASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEPS-----SISHPHHDQLMMMKKKKKMMIKVPPTML
        + +H  VH SSIALLQERFRQL+++KE+REERE++++LS       ++      NN T  C   EPS     S  H HH  L+  + +       P   L
Subjt:  EASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEPS-----SISHPHHDQLMMMKKKKKMMIKVPPTML

Query:  TLLPQTSLSLSLTSSSSNHQPNNNNIPTL-MDLWPLPT---TSCDSAISFITKL-NDHHHDYSDSHIDVDTSLHL
        +L P    S S +         N+  P L M LWPL T        A S  + L +D  HDYS    DVDTSLHL
Subjt:  TLLPQTSLSLSLTSSSSNHQPNNNNIPTL-MDLWPLPT---TSCDSAISFITKL-NDHHHDYSDSHIDVDTSLHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGGGAAGATATTATTAGAAAGAATGATGATCAAGAGGCATCTCATGTTGCTGTTCATTCCTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTTGAGAA
AATGAAGGAGATGAGAGAAGAAAGAGAGGTTGTGAAATTGCTATCTCTTTCTCAATACCCTAAAACTCATAGCTGCTGCAGCTTCTTCTTCAATAATAATACAAATACTT
GTGTCCTTTTTGAGCCTTCTTCAATTTCACATCCTCATCATGATCAGTTAATGATGATGAAGAAGAAGAAGAAGATGATGATCAAGGTACCACCAACAATGTTAACATTG
CTGCCTCAAACTTCTTTATCTCTCTCCTTAACTTCTTCTTCTTCAAATCATCAACCCAACAATAATAATATCCCAACTTTGATGGACTTATGGCCACTCCCTACAACTTC
TTGTGATAGTGCCATCTCATTCATTACTAAACTAAATGATCATCATCATGATTACTCTGACTCTCATATCGATGTTGATACTTCTCTTCACTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGGGAAGATATTATTAGAAAGAATGATGATCAAGAGGCATCTCATGTTGCTGTTCATTCCTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTTGAGAA
AATGAAGGAGATGAGAGAAGAAAGAGAGGTTGTGAAATTGCTATCTCTTTCTCAATACCCTAAAACTCATAGCTGCTGCAGCTTCTTCTTCAATAATAATACAAATACTT
GTGTCCTTTTTGAGCCTTCTTCAATTTCACATCCTCATCATGATCAGTTAATGATGATGAAGAAGAAGAAGAAGATGATGATCAAGGTACCACCAACAATGTTAACATTG
CTGCCTCAAACTTCTTTATCTCTCTCCTTAACTTCTTCTTCTTCAAATCATCAACCCAACAATAATAATATCCCAACTTTGATGGACTTATGGCCACTCCCTACAACTTC
TTGTGATAGTGCCATCTCATTCATTACTAAACTAAATGATCATCATCATGATTACTCTGACTCTCATATCGATGTTGATACTTCTCTTCACTTGTAA
Protein sequenceShow/hide protein sequence
MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTL
LPQTSLSLSLTSSSSNHQPNNNNIPTLMDLWPLPTTSCDSAISFITKLNDHHHDYSDSHIDVDTSLHL