; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G004920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G004920
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTPD1 protein homolog 1-like
Genome locationchr01:4054551..4055240
RNA-Seq ExpressionLsi01G004920
SyntenyLsi01G004920
Gene Ontology termsGO:0001709 - cell fate determination (biological process)
GO:0009408 - response to heat (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK12989.1 TPD1 protein-like protein 1-like isoform X2 [Cucumis melo var. makuwa]3.0e-7386.25Show/hide
Query:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI
        GGAFHRFC CFLL  FL  EFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGSECSK+D+IIFQG  TPLP GIPTY+VQILNSCASDCSISNI
Subjt:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI

Query:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCS
        HVKC WFSSARLVNPRIF+RV+YDDCLVNDG+ALGPG+TLSFQYANTFPYPLSV+S TCS
Subjt:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCS

XP_004134986.1 TPD1 protein homolog 1 isoform X2 [Cucumis sativus]1.5e-7586.96Show/hide
Query:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI
        GGAFHRFC  FLLT FLGNEFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGS C+KDD+IIFQG  TPLP GIPTY+VQILNSCASDCSISNI
Subjt:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI

Query:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS
        HVKC WFSSARLVNPRIF+RV+YDDCLVNDG+ALGPG+TLSFQYANTFPYPLSV+S TCSS
Subjt:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS

XP_008440085.1 PREDICTED: TPD1 protein homolog 1-like isoform X1 [Cucumis melo]6.6e-7687.5Show/hide
Query:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI
        GGAFHRFC CFLL  FLGNEFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGSECSK D+IIFQG  TPLP GIPTY+VQILNSCASDCSISNI
Subjt:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI

Query:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCS
        HVKC WFSSARLVNPRIF+RV+YDDCLVNDG+ALGPG+TLSFQYANTFPYPLSV+S TCS
Subjt:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCS

XP_008440086.1 PREDICTED: TPD1 protein homolog 1-like isoform X2 [Cucumis melo]6.8e-7386.25Show/hide
Query:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI
        GGAFHRFC CFLL  FL  EFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGSECSK D+IIFQG  TPLP GIPTY+VQILNSCASDCSISNI
Subjt:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI

Query:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCS
        HVKC WFSSARLVNPRIF+RV+YDDCLVNDG+ALGPG+TLSFQYANTFPYPLSV+S TCS
Subjt:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCS

XP_038880861.1 TPD1 protein homolog 1-like isoform X2 [Benincasa hispida]1.7e-7992.02Show/hide
Query:  MKGGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSIS
        MKGGAFHRF  CFLL CFL  EFKLVHLRVVQ AAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTY+VQILNSCASDCSIS
Subjt:  MKGGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSIS

Query:  NIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS
        NIH+KC WFSSARLVNPRIFRRV+YDDCLV++GQALGPGQTLSFQYANTFPYPLSV+SVTCSS
Subjt:  NIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS

TrEMBL top hitse value%identityAlignment
A0A0A0KL27 Uncharacterized protein7.1e-7686.96Show/hide
Query:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI
        GGAFHRFC  FLLT FLGNEFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGS C+KDD+IIFQG  TPLP GIPTY+VQILNSCASDCSISNI
Subjt:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI

Query:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS
        HVKC WFSSARLVNPRIF+RV+YDDCLVNDG+ALGPG+TLSFQYANTFPYPLSV+S TCSS
Subjt:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS

A0A1S3AZV4 TPD1 protein homolog 1-like isoform X13.2e-7687.5Show/hide
Query:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI
        GGAFHRFC CFLL  FLGNEFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGSECSK D+IIFQG  TPLP GIPTY+VQILNSCASDCSISNI
Subjt:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI

Query:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCS
        HVKC WFSSARLVNPRIF+RV+YDDCLVNDG+ALGPG+TLSFQYANTFPYPLSV+S TCS
Subjt:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCS

A0A1S3B0B6 TPD1 protein homolog 1-like isoform X23.3e-7386.25Show/hide
Query:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI
        GGAFHRFC CFLL  FL  EFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGSECSK D+IIFQG  TPLP GIPTY+VQILNSCASDCSISNI
Subjt:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI

Query:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCS
        HVKC WFSSARLVNPRIF+RV+YDDCLVNDG+ALGPG+TLSFQYANTFPYPLSV+S TCS
Subjt:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCS

A0A5D3CRM1 TPD1 protein-like protein 1-like isoform X21.5e-7386.25Show/hide
Query:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI
        GGAFHRFC CFLL  FL  EFKLVHLRV+Q AARE RNGIS MSLQSSNSGKEMNRIGSECSK+D+IIFQG  TPLP GIPTY+VQILNSCASDCSISNI
Subjt:  GGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNI

Query:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCS
        HVKC WFSSARLVNPRIF+RV+YDDCLVNDG+ALGPG+TLSFQYANTFPYPLSV+S TCS
Subjt:  HVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCS

A0A6J1ITT0 TPD1 protein homolog 1-like6.2e-6477.91Show/hide
Query:  MKGGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSIS
        MK GAF RF  CF L  FL   FKLV L VVQ AAREK +GIS MSLQSS +G+ MNR+GSECSKDDV++FQGQT PLPDGIP+++VQILNSC+S CSIS
Subjt:  MKGGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSIS

Query:  NIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS
        NIH+KC WFSSARLVNPRIFRRV YDDCL+NDG+ALGPGQTLSFQYANTF YPLSV+SVTCSS
Subjt:  NIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS

SwissProt top hitse value%identityAlignment
A8MS78 Uncharacterized protein At1g058352.3e-0740.28Show/hide
Query:  YMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYD--DCLVNDGQALGPGQTLSFQYANTFPYPL
        + V+++N C   C I N+ +KC+ F  + LV+P   R ++    +C+VNDG  L P QTLSF Y+NT  + L
Subjt:  YMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYD--DCLVNDGQALGPGQTLSFQYANTFPYPL

Q1G3T1 TPD1 protein homolog 11.1e-4665.12Show/hide
Query:  VAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVND
        V+  E R  +S   L S + G   NRIG +CSKDD+++FQG T PLP G+P+Y V+I NSC SDC+I+ IHV C WFSS RLVNPR+FRR+ YDDCLVND
Subjt:  VAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVND

Query:  GQALGPGQTLSFQYANTFPYPLSVASVTC
        GQ LGPGQ+LSFQYAN+F YPLSVASV+C
Subjt:  GQALGPGQTLSFQYANTFPYPLSVASVTC

Q2QR54 TPD1 protein homolog 1A1.9e-3047.24Show/hide
Query:  ISGMSLQSSNSGKEMNRIGSECS-KDDVIIFQGQTTPLPDGIPTYMVQILNSCA------SDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQ
        +SG        G    R+   C+  DD+ I+QG+ TPLP G+P Y V ++N CA       +C+I+ IHV+C WFSS  LV+PR+FRR+ +DDCL+NDG+
Subjt:  ISGMSLQSSNSGKEMNRIGSECS-KDDVIIFQGQTTPLPDGIPTYMVQILNSCA------SDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQ

Query:  ALGPGQTLSFQYANTFPYPLSVASVTC
         L  G+T+SF+Y N+FPY LSV+  TC
Subjt:  ALGPGQTLSFQYANTFPYPLSVASVTC

Q6TLJ2 Protein TAPETUM DETERMINANT 12.6e-3556.91Show/hide
Query:  MSLQSSNSGK-----EMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPG
        M L S  +GK     E  RIG +C   D+++ Q  T P+P+GIP YMV+I N C S C IS IH+ C WFSSA+L+NPR+F+R+ YDDCLVN+G+ L  G
Subjt:  MSLQSSNSGK-----EMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPG

Query:  QTLSFQYANTFPYPLSVASVTCS
         TLSF YANTFPY LSVA VTC+
Subjt:  QTLSFQYANTFPYPLSVASVTCS

Q8S6P9 TPD1 protein homolog 1B2.1e-2445.22Show/hide
Query:  SSNSGKE-MNRIGSE-CSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQY
        S N G+  M R+  + CS+ +V+++Q     LP GIPTY V+I+N C + C++ ++H+ C  F+SA LV+P  F+R+ ++DCLV  G  LGP + +SFQY
Subjt:  SSNSGKE-MNRIGSE-CSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQY

Query:  ANTFPYPLSVASVTC
        +N+F YPL+VA+V C
Subjt:  ANTFPYPLSVASVTC

Arabidopsis top hitse value%identityAlignment
AT1G05835.1 PHD finger protein1.6e-0840.28Show/hide
Query:  YMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYD--DCLVNDGQALGPGQTLSFQYANTFPYPL
        + V+++N C   C I N+ +KC+ F  + LV+P   R ++    +C+VNDG  L P QTLSF Y+NT  + L
Subjt:  YMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYD--DCLVNDGQALGPGQTLSFQYANTFPYPL

AT1G32583.1 FUNCTIONS IN: molecular_function unknown8.1e-4865.12Show/hide
Query:  VAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVND
        V+  E R  +S   L S + G   NRIG +CSKDD+++FQG T PLP G+P+Y V+I NSC SDC+I+ IHV C WFSS RLVNPR+FRR+ YDDCLVND
Subjt:  VAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVND

Query:  GQALGPGQTLSFQYANTFPYPLSVASVTC
        GQ LGPGQ+LSFQYAN+F YPLSVASV+C
Subjt:  GQALGPGQTLSFQYANTFPYPLSVASVTC

AT4G24972.1 tapetum determinant 11.9e-3656.91Show/hide
Query:  MSLQSSNSGK-----EMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPG
        M L S  +GK     E  RIG +C   D+++ Q  T P+P+GIP YMV+I N C S C IS IH+ C WFSSA+L+NPR+F+R+ YDDCLVN+G+ L  G
Subjt:  MSLQSSNSGK-----EMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFSSARLVNPRIFRRVTYDDCLVNDGQALGPG

Query:  QTLSFQYANTFPYPLSVASVTCS
         TLSF YANTFPY LSVA VTC+
Subjt:  QTLSFQYANTFPYPLSVASVTCS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGTGGTGCTTTTCACAGATTCTGCTTCTGTTTTCTCCTCACATGTTTTCTTGGTAATGAATTCAAGTTGGTTCATTTGAGAGTTGTTCAGGTAGCTGCAAGAGA
GAAAAGAAATGGGATTTCTGGGATGTCGCTTCAATCTTCTAATAGTGGTAAAGAGATGAATCGCATTGGTTCAGAATGTTCAAAAGACGATGTCATTATATTTCAAGGCC
AAACAACTCCACTTCCGGATGGGATTCCAACATATATGGTTCAGATCTTGAATTCATGTGCTTCAGACTGCAGCATCTCCAACATTCACGTCAAATGTGAGTGGTTCAGC
TCAGCCAGATTGGTGAATCCAAGAATTTTTAGGCGAGTCACTTATGATGACTGCCTTGTCAACGATGGCCAAGCTCTTGGTCCTGGTCAAACTCTGTCTTTTCAATATGC
TAATACTTTCCCTTACCCTCTTTCTGTAGCTTCTGTAACTTGTTCTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGTGGTGCTTTTCACAGATTCTGCTTCTGTTTTCTCCTCACATGTTTTCTTGGTAATGAATTCAAGTTGGTTCATTTGAGAGTTGTTCAGGTAGCTGCAAGAGA
GAAAAGAAATGGGATTTCTGGGATGTCGCTTCAATCTTCTAATAGTGGTAAAGAGATGAATCGCATTGGTTCAGAATGTTCAAAAGACGATGTCATTATATTTCAAGGCC
AAACAACTCCACTTCCGGATGGGATTCCAACATATATGGTTCAGATCTTGAATTCATGTGCTTCAGACTGCAGCATCTCCAACATTCACGTCAAATGTGAGTGGTTCAGC
TCAGCCAGATTGGTGAATCCAAGAATTTTTAGGCGAGTCACTTATGATGACTGCCTTGTCAACGATGGCCAAGCTCTTGGTCCTGGTCAAACTCTGTCTTTTCAATATGC
TAATACTTTCCCTTACCCTCTTTCTGTAGCTTCTGTAACTTGTTCTTCTTAA
Protein sequenceShow/hide protein sequence
MKGGAFHRFCFCFLLTCFLGNEFKLVHLRVVQVAAREKRNGISGMSLQSSNSGKEMNRIGSECSKDDVIIFQGQTTPLPDGIPTYMVQILNSCASDCSISNIHVKCEWFS
SARLVNPRIFRRVTYDDCLVNDGQALGPGQTLSFQYANTFPYPLSVASVTCSS