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Lsi01G004960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G004960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr01:4074598..4075023
RNA-Seq ExpressionLsi01G004960
SyntenyLsi01G004960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025575.1 hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa]2.1e-5479.43Show/hide
Query:  MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELIL
        MGNCINT HFPPLQKIKGFICCEVE L+L LPI   A  AY   K  SQAFTTSSAV EV+H PPPLPVRID S + PAD  KLPKATIVVSKQQLELIL
Subjt:  MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELIL

Query:  RKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY
        RKSK+ GSKGIAVQFSD F+VDD CPRW PALPTIPEVRNY
Subjt:  RKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY

KAE8647639.1 hypothetical protein Csa_004428 [Cucumis sativus]2.1e-5480.58Show/hide
Query:  MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAV--LEVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLEL
        MGNCINT HFPPLQKIKGFICCEVEDLNLALPIE  A          +QAFTTSSAV   EVEHGPPPLPVRID S + PADLCKLPK TIVVSKQQLEL
Subjt:  MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAV--LEVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLEL

Query:  ILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPE
        ILRKSK+ GSKGIAVQFSDSF+VDD CPRW PALPTIPE
Subjt:  ILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPE

KAF9851460.1 hypothetical protein H0E87_015599 [Populus deltoides]6.8e-1338.16Show/hide
Query:  MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAF-------TTSSAVLEVEHGPPPL--PVRID-DSFINPADLCKLPKATI
        MGNCI+   +   ++ K  I    E +   +  ++K  +G Y G  L   A         T     EV H  P L  P R++  S +   + C   K  I
Subjt:  MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAF-------TTSSAVLEVEHGPPPL--PVRID-DSFINPADLCKLPKATI

Query:  VVSKQQLELILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY
        VV++QQLEL+LR SK   SKGIAV+FS+SF+  +R  +WRP+L TIPEVR +
Subjt:  VVSKQQLELILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY

KAG6594706.1 hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sororia]1.7e-2452.41Show/hide
Query:  MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEVEHG--PPPLPVRI--DDSFINPADLCKLPKATIVVSKQQL
        MGNCI++PH                  +LA+P+EK A     GLKLT       SAVLEV  G   PP  V I  DD    PA LCKLPKATIVVSK+QL
Subjt:  MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEVEHG--PPPLPVRI--DDSFINPADLCKLPKATIVVSKQQL

Query:  ELILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY
        E +L  S+  GS+GIAVQFSDSF+ D  C RW P LPTI EV NY
Subjt:  ELILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY

KAG6603830.1 hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sororia]6.1e-4671.53Show/hide
Query:  MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEVEHGPPPLPVRI--DDSFINPADLCKLPK-ATIVVSKQQLE
        MGNCINT HF PLQK+K  ICCE EDL+LALPIEK A+GAY          TTSSAVLEV+ G PPLPV I  DD+   P  LCKLPK  TIVVSKQQLE
Subjt:  MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEVEHGPPPLPVRI--DDSFINPADLCKLPK-ATIVVSKQQLE

Query:  LILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY
        LILR S+   SKGIAVQFSDSFEVDDRCPRW PALPTI EV NY
Subjt:  LILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY

TrEMBL top hitse value%identityAlignment
A0A0A0KHP3 Uncharacterized protein1.7e-5781.12Show/hide
Query:  MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAV--LEVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLEL
        MGNCINT HFPPLQKIKGFICCEVEDLNLALPIE  A          +QAFTTSSAV   EVEHGPPPLPVRID S + PADLCKLPK TIVVSKQQLEL
Subjt:  MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAV--LEVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLEL

Query:  ILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY
        ILRKSK+ GSKGIAVQFSDSF+VDD CPRW PALPTIPEVRNY
Subjt:  ILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY

A0A5D3CLY8 Uncharacterized protein1.0e-5479.43Show/hide
Query:  MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELIL
        MGNCINT HFPPLQKIKGFICCEVE L+L LPI   A  AY   K  SQAFTTSSAV EV+H PPPLPVRID S + PAD  KLPKATIVVSKQQLELIL
Subjt:  MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELIL

Query:  RKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY
        RKSK+ GSKGIAVQFSD F+VDD CPRW PALPTIPEVRNY
Subjt:  RKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY

A0A5N5M953 Uncharacterized protein8.1e-1238.93Show/hide
Query:  MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTS----SAVL---EVEHGPPPL--PVRID-DSFINPADLCKLPKATI
        MGNCI+       ++ K  I    E +   + P++K  +G Y G  L ++A   +      VL   EV H  PPL  P R++  S +   + C   K  I
Subjt:  MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTS----SAVL---EVEHGPPPL--PVRID-DSFINPADLCKLPKATI

Query:  VVSKQQLELILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEV
        VV++QQLEL+LR SK +  +GIAVQFS+SF+   R  +W+P+L TIPEV
Subjt:  VVSKQQLELILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEV

A0A6A1W907 Uncharacterized protein3.4e-1031.85Show/hide
Query:  MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTSSAV---------------LEVEHGPPPLPVRIDDSFINPADLCKL
        MGNC +    P  +KI+  +  E E + +   P+EK   G Y G KL   +   S  +               L+ +   PP+P R  +      +  K 
Subjt:  MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTSSAV---------------LEVEHGPPPLPVRIDDSFINPADLCKL

Query:  PKATIVVSKQQLELILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY
         K  IVV+K QLEL+LR +    SK IA+    SF+V +   +WRP+L  IPEV ++
Subjt:  PKATIVVSKQQLELILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY

B9HD50 Uncharacterized protein2.4e-1135.53Show/hide
Query:  MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEVEHGP-------PPL--PVRID-DSFINPADLCKLPKATI
        MGNCI+   +   ++ K  I    E +   +  ++K  +G Y G  L   A        +    P       P L  P R++  S +   + C   K  I
Subjt:  MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEVEHGP-------PPL--PVRID-DSFINPADLCKLPKATI

Query:  VVSKQQLELILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY
        VV++QQLEL+LR SK   SKGIAV+FS+SF+  +R  +WRP+L TIPEV+ +
Subjt:  VVSKQQLELILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGACAGC
TAATGGAGCTTATAAAGGCTTAAAGCTAACAAGCCAAGCCTTTACAACTTCAAGTGCAGTTCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATGATT
CTTTTATCAACCCTGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAGACATTGGCTCTAAAGGT
ATTGCTGTTCAATTCTCTGATAGTTTTGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGACAGC
TAATGGAGCTTATAAAGGCTTAAAGCTAACAAGCCAAGCCTTTACAACTTCAAGTGCAGTTCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATGATT
CTTTTATCAACCCTGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAGACATTGGCTCTAAAGGT
ATTGCTGTTCAATTCTCTGATAGTTTTGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG
Protein sequenceShow/hide protein sequence
MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKG
IAVQFSDSFEVDDRCPRWRPALPTIPEVRNY