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Lsi01G005300 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G005300
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionheterogeneous nuclear ribonucleoprotein H2 isoform X1
Genome locationchr01:4343875..4344645
RNA-Seq ExpressionLsi01G005300
SyntenyLsi01G005300
Gene Ontology termsGO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134826.1 heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis sativus]1.7e-14299.61Show/hide
Query:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
        MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
Subjt:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV

Query:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA
        QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA+EVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA
Subjt:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA

Query:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
        SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
Subjt:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ

XP_008440908.1 PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Cucumis melo]2.2e-14299.22Show/hide
Query:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
        MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
Subjt:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV

Query:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA
        QVEFALQRDRQNMGRRYVEVFRCKRQDYYNA+A+EVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA
Subjt:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA

Query:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
        SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
Subjt:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ

XP_022133202.1 heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Momordica charantia]3.8e-13997.27Show/hide
Query:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
        MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPT AFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+
Subjt:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV

Query:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA
        QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA+EVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNI EFFGEFDL EDR+HIA
Subjt:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA

Query:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
        SRPDGKATGEAYVEFASAEEAKRAMSKDKM IGSRYVELFPSTPNEARRAESRSRQ
Subjt:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ

XP_023544124.1 heterogeneous nuclear ribonucleoprotein H-like isoform X2 [Cucurbita pepo subsp. pepo]1.1e-13896.88Show/hide
Query:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
        MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+
Subjt:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV

Query:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA
        QVEFALQRDRQNMGRRYVEVF CKRQDYYNAVA+EVNYEGIYDNDY+GSPPPRQKR SDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAE+RIHIA
Subjt:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA

Query:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
        SRPDGKATGEAYVEFAS E+AKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
Subjt:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ

XP_038882740.1 heterogeneous nuclear ribonucleoprotein H2 isoform X1 [Benincasa hispida]7.5e-143100Show/hide
Query:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
        MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
Subjt:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV

Query:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA
        QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA
Subjt:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA

Query:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
        SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
Subjt:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ

TrEMBL top hitse value%identityAlignment
A0A0A0KJN7 RRM domain-containing protein8.1e-14399.61Show/hide
Query:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
        MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
Subjt:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV

Query:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA
        QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA+EVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA
Subjt:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA

Query:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
        SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
Subjt:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ

A0A1S4DTH1 heterogeneous nuclear ribonucleoprotein H2 isoform X11.1e-14299.22Show/hide
Query:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
        MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
Subjt:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV

Query:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA
        QVEFALQRDRQNMGRRYVEVFRCKRQDYYNA+A+EVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA
Subjt:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA

Query:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
        SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
Subjt:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ

A0A6J1BYF3 heterogeneous nuclear ribonucleoprotein H2 isoform X11.9e-13997.27Show/hide
Query:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
        MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPT AFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+
Subjt:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV

Query:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA
        QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA+EVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNI EFFGEFDL EDR+HIA
Subjt:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA

Query:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
        SRPDGKATGEAYVEFASAEEAKRAMSKDKM IGSRYVELFPSTPNEARRAESRSRQ
Subjt:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ

A0A6J1EFC5 heterogeneous nuclear ribonucleoprotein H2-like isoform X15.4e-13996.88Show/hide
Query:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
        MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSST GFQPYGYGSFPPTHAFPVVRLRGLPFNC+DIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
Subjt:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV

Query:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA
        QVEFALQRDRQNMGRRYVEVFRCKRQDYYNA+A+EVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSV KS+IIEFFGEFDLAEDRIHIA
Subjt:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA

Query:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
        SRPDGKATGEAYVEFAS EEAKRAMSKDKMTIGSRYVELFPST NEARRAESRSRQ
Subjt:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ

A0A6J1IJJ3 heterogeneous nuclear ribonucleoprotein H-like isoform X19.2e-13996.88Show/hide
Query:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV
        MLGSGGVSDGY+VGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGS+
Subjt:  MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSV

Query:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA
        QVEFALQRDRQNMGRRYVEVF CKRQDYYNAVA+EVNYEGIY+NDY+GSPPPRQKR SDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAE+RIHIA
Subjt:  QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIA

Query:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
        SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
Subjt:  SRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ

SwissProt top hitse value%identityAlignment
P52597 Heterogeneous nuclear ribonucleoprotein F6.0e-2636.14Show/hide
Query:  VVRLRGLPFNCTDIDIFKFFAGLDIVD-----VLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDY
        VV+LRGLP++C+  D+  F +   I D       +  + GR  GEAFV       V+ AL++DR++MG RY+EVF+  R +               D   
Subjt:  VVRLRGLPFNCTDIDIFKFFAGLDIVD-----VLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDY

Query:  HGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNE
          S P      +D         ++LRGLPF  TK  I++FF   ++  + I +   P+GK TGEA+V+FAS E A++A+ K K  IG RY+E+F S+  E
Subjt:  HGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNE

Query:  AR
         R
Subjt:  AR

Q5E9J1 Heterogeneous nuclear ribonucleoprotein F4.6e-2636.63Show/hide
Query:  VVRLRGLPFNCTDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDY
        VV+LRGLP++C+  D+  F +   I D +     +  + GR  GEAFV       V+ AL++DR++MG RY+EVF+  R +               D   
Subjt:  VVRLRGLPFNCTDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDY

Query:  HGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNE
          S P      +D         ++LRGLPF  TK  II+FF   ++  + I +   P+GK TGEA+V+FAS E A++A+ K K  IG RY+E+F S+  E
Subjt:  HGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNE

Query:  AR
         R
Subjt:  AR

Q60HC3 Heterogeneous nuclear ribonucleoprotein F6.0e-2636.14Show/hide
Query:  VVRLRGLPFNCTDIDIFKFFAGLDIVD-----VLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDY
        VV+LRGLP++C+  D+  F +   I D       +  + GR  GEAFV       V+ AL++DR++MG RY+EVF+  R +               D   
Subjt:  VVRLRGLPFNCTDIDIFKFFAGLDIVD-----VLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDY

Query:  HGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNE
          S P      +D         ++LRGLPF  TK  I++FF   ++  + I +   P+GK TGEA+V+FAS E A++A+ K K  IG RY+E+F S+  E
Subjt:  HGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNE

Query:  AR
         R
Subjt:  AR

Q794E4 Heterogeneous nuclear ribonucleoprotein F6.0e-2636.14Show/hide
Query:  VVRLRGLPFNCTDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDY
        VV+LRGLP++C+  D+  F +   I D +     +  + GR  GEAFV       V+ AL++DR++MG RY+EVF+  R +               D   
Subjt:  VVRLRGLPFNCTDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDY

Query:  HGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNE
          S P      +D         ++LRGLPF  TK  I++FF   ++  + I +   P+GK TGEA+V+FAS E A++A+ K K  IG RY+E+F S+  E
Subjt:  HGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNE

Query:  AR
         R
Subjt:  AR

Q9Z2X1 Heterogeneous nuclear ribonucleoprotein F6.0e-2636.14Show/hide
Query:  VVRLRGLPFNCTDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDY
        VV+LRGLP++C+  D+  F +   I D +     +  + GR  GEAFV       V+ AL++DR++MG RY+EVF+  R +               D   
Subjt:  VVRLRGLPFNCTDIDIFKFFAGLDIVDVL-----LVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDY

Query:  HGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNE
          S P      +D         ++LRGLPF  TK  I++FF   ++  + I +   P+GK TGEA+V+FAS E A++A+ K K  IG RY+E+F S+  E
Subjt:  HGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNE

Query:  AR
         R
Subjt:  AR

Arabidopsis top hitse value%identityAlignment
AT3G20890.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-6245.49Show/hide
Query:  GSGGVSDGYEVGSKRQRMME---PNPYFAV-SSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAG
        G G   DG E+G KRQRM++   P P++    SS   + PYG+ + PP   FP VRLRGLPF+C ++D+ +FF GLD+VDVL V++N +  GEAF V   
Subjt:  GSGGVSDGYEVGSKRQRMME---PNPYFAV-SSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAG

Query:  SVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIY--------------------------DNDYHGSPPPR---QKRFSD--KDQMEYTE
         +QV+FALQ++RQNMGRRYVEVFR  +Q+YY A+A+EV    ++                               GS P R   + R SD  K+ +E+T 
Subjt:  SVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIY--------------------------DNDYHGSPPPR---QKRFSD--KDQMEYTE

Query:  ILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSR
        IL+LRGLPFS  K +I++FF +F+L+ED +H+    +G+ TGEA+VEF +AE+++ AM KD+ T+GSRY+ELFPS+  E   A SR R
Subjt:  ILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSR

AT4G36960.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-0632.94Show/hide
Query:  LKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESR
        L + G+P+ +    + ++  +F   ED I +  R  G++ G  YV FASAE+AK A+ K +  +G+R +E+  +TP E  R  ++
Subjt:  LKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESR

AT4G36960.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-0632.94Show/hide
Query:  LKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESR
        L + G+P+ +    + ++  +F   ED I +  R  G++ G  YV FASAE+AK A+ K +  +G+R +E+  +TP E  R  ++
Subjt:  LKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESR

AT5G66010.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-9466.54Show/hide
Query:  MLGSGGV---SDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFA
        M GS G    S GYEVGSKRQRMM+ NPY AV +    F P+GY        FPVVRLRGLPFNC DIDIF+FFAGL+IVDVLLV+KNG+F GEAFVVFA
Subjt:  MLGSGGV---SDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFA

Query:  GSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPP----RQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLA
        G +QVE ALQRDR NMGRRYVEVFRC +QDYYNAVA+E   EG Y+ +   SPPP    R KRFS+K+++EYTE+LK+RGLP+SV K  IIEFF  + + 
Subjt:  GSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPP----RQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLA

Query:  EDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
        + R+ +  RPDGKATGEA+VEF + EEA+RAM+KDKM+IGSRYVELFP+T  EARRAE+RSRQ
Subjt:  EDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ

AT5G66010.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.8e-5565.84Show/hide
Query:  VQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPP----RQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAED
        +QVE ALQRDR NMGRRYVEVFRC +QDYYNAVA+E   EG Y+ +   SPPP    R KRFS+K+++EYTE+LK+RGLP+SV K  IIEFF  + + + 
Subjt:  VQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPP----RQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAED

Query:  RIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ
        R+ +  RPDGKATGEA+VEF + EEA+RAM+KDKM+IGSRYVELFP+T  EARRAE+RSRQ
Subjt:  RIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCA
ACCTTACGGCTATGGGAGTTTTCCACCTACTCATGCCTTTCCTGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGACATTTTCAAGTTCTTTGCTGGAC
TGGACATTGTGGATGTGCTGCTCGTCAACAAGAATGGGCGGTTCATGGGAGAGGCCTTTGTTGTCTTTGCTGGCTCTGTGCAGGTTGAGTTTGCATTGCAACGGGATCGA
CAGAATATGGGGCGTAGGTATGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTATAATGCTGTTGCTTCTGAAGTAAATTATGAGGGCATTTATGATAATGACTACCA
TGGAAGCCCTCCTCCTCGACAAAAAAGGTTCAGCGACAAGGATCAGATGGAATACACTGAGATACTGAAGCTTCGTGGTCTCCCCTTTTCTGTGACAAAATCCAACATCA
TTGAATTTTTCGGGGAGTTCGATCTGGCAGAAGATAGGATACATATTGCAAGTCGTCCAGATGGGAAGGCTACCGGAGAGGCTTACGTGGAGTTTGCTTCAGCAGAGGAG
GCGAAGAGAGCGATGAGCAAGGACAAGATGACAATTGGATCGAGATATGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCAAGAAGAGCTGAGTCAAGGTCAAGACAGTA
A
mRNA sequenceShow/hide mRNA sequence
ATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGCTGGATTTCA
ACCTTACGGCTATGGGAGTTTTCCACCTACTCATGCCTTTCCTGTGGTTCGCCTTAGAGGACTTCCCTTCAACTGCACTGACATTGACATTTTCAAGTTCTTTGCTGGAC
TGGACATTGTGGATGTGCTGCTCGTCAACAAGAATGGGCGGTTCATGGGAGAGGCCTTTGTTGTCTTTGCTGGCTCTGTGCAGGTTGAGTTTGCATTGCAACGGGATCGA
CAGAATATGGGGCGTAGGTATGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTATAATGCTGTTGCTTCTGAAGTAAATTATGAGGGCATTTATGATAATGACTACCA
TGGAAGCCCTCCTCCTCGACAAAAAAGGTTCAGCGACAAGGATCAGATGGAATACACTGAGATACTGAAGCTTCGTGGTCTCCCCTTTTCTGTGACAAAATCCAACATCA
TTGAATTTTTCGGGGAGTTCGATCTGGCAGAAGATAGGATACATATTGCAAGTCGTCCAGATGGGAAGGCTACCGGAGAGGCTTACGTGGAGTTTGCTTCAGCAGAGGAG
GCGAAGAGAGCGATGAGCAAGGACAAGATGACAATTGGATCGAGATATGTGGAGTTGTTTCCTTCAACCCCAAATGAAGCAAGAAGAGCTGAGTCAAGGTCAAGACAGTA
A
Protein sequenceShow/hide protein sequence
MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDR
QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEE
AKRAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ