CuGenDBv2

Gene ID	Lsi01G005750
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	la-related protein 1C-like
Genome location	chr01:4600513..4602787
RNA-Seq Expression	Lsi01G005750
Synteny	Lsi01G005750
Gene Ontology terms	GO:0003723 - RNA binding (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6603893.1 La-related protein 1C, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-43

80.62

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Query:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL
        V+RLTENIQTILDALQSST+VEVKGD VRRRNDYDRWIIRPGQ+P IA P LSP SSN +ML AGVQGIALENINHR SEGGQGDV VEA H+SRPSGNL
Subjt:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL

Query:  SMQAQPSGD------NTKAGSDHSSSEKS
        SMQAQP GD      NTKAG D SSSE+S
Subjt:  SMQAQPSGD------NTKAGSDHSSSEKS

XP_022949955.1 la-related protein 1C-like isoform X1 [Cucurbita moschata]

2.5e-43

80.62

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Query:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL
        V+RLTENIQTILDALQSST+VEVKGD VRRRNDYDRWIIRPGQ+P IA P LSP SSN +MLAAGVQGIALENINHR SEGGQGDV VEA H+ RPSGNL
Subjt:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL

Query:  SMQAQPSGD------NTKAGSDHSSSEKS
        SMQAQP GD      NTKAG D SSSE+S
Subjt:  SMQAQPSGD------NTKAGSDHSSSEKS

XP_023517528.1 la-related protein 1C-like [Cucurbita pepo subsp. pepo]

6.8e-41

76.74

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Query:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL
        V+RLTE+I  ILDALQSS++VEVKG+TVRRRNDYDRWIIRPG+IP +AGP LSPGSSN +MLAAGVQ IALENINHR SEGGQG V VEA  +SRPSGN+
Subjt:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL

Query:  SMQAQPSGD------NTKAGSDHSSSEKS
        SM AQP GD      NTKAGSDHSSSE+S
Subjt:  SMQAQPSGD------NTKAGSDHSSSEKS

XP_023522714.1 la-related protein 1C-like [Cucurbita pepo subsp. pepo]

6.8e-41

76.74

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Query:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL
        V+RLTE+I  ILDALQSS++VEVKG+TVRRRNDYDRWIIRPG+IP +AGP LSPGSSN +MLAAGVQ IALENINHR SEGGQG V VEA  +SRPSGN+
Subjt:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL

Query:  SMQAQPSGD------NTKAGSDHSSSEKS
        SM AQP GD      NTKAGSDHSSSE+S
Subjt:  SMQAQPSGD------NTKAGSDHSSSEKS

XP_023543638.1 la-related protein 1C-like [Cucurbita pepo subsp. pepo]

1.1e-41

78.29

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Query:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL
        V+RLTENIQTILDALQSST+VEVKGD VRRRNDYDRWIIRPGQ+P IA P LSP SSN +MLAAGVQGIALENINHR SEGGQG V VEA H+S P+GNL
Subjt:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL

Query:  SMQAQPSGD------NTKAGSDHSSSEKS
        SMQAQP GD      NTKAG D SS+E+S
Subjt:  SMQAQPSGD------NTKAGSDHSSSEKS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJG2 HTH La-type RNA-binding domain-containing protein

3.5e-35

71.77

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Query:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGP--QLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSG
        VQRLTENIQTILDALQSSTVVEVKGDTVRRR+DYDRWIIRPGQ+P I+GP   LSPGSS  +MLAAGV+GIALENINHR SEGGQGDV V+         
Subjt:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGP--QLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSG

Query:  NLSMQAQPSGDNTKAGSDHSSSEK
            +A    +NTKAGS+HSSSE+
Subjt:  NLSMQAQPSGDNTKAGSDHSSSEK

A0A5A7SHL1 La-related protein 1C

3.5e-35

70.4

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Query:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGP--QLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSG
        VQRLTENIQTILDALQSSTVVEVKGDTVRRR+DYDRWIIRPGQ+P I+GP   LSPGSSN +MLA GVQGIALEN+NH+ SEGGQG+V V+         
Subjt:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGP--QLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSG

Query:  NLSMQAQPSGDNTKAGSDHSSSEKS
            +A     NTKAGS+HSSSE+S
Subjt:  NLSMQAQPSGDNTKAGSDHSSSEKS

A0A6J1EF26 la-related protein 1C-like

9.6e-41

76.74

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Query:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL
        V+RLTE+I  ILDALQSS++VEVKG+TVRRRNDYDRWIIRPG+IP +AGP LSPGSSN +MLAAGVQ IALENINHR SEGGQG V VEA  +SRPSGNL
Subjt:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL

Query:  SMQAQPSGD------NTKAGSDHSSSEKS
        S  AQP GD      NTKAGSDHSSSE+S
Subjt:  SMQAQPSGD------NTKAGSDHSSSEKS

A0A6J1GE82 la-related protein 1C-like isoform X1

1.2e-43

80.62

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Query:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL
        V+RLTENIQTILDALQSST+VEVKGD VRRRNDYDRWIIRPGQ+P IA P LSP SSN +MLAAGVQGIALENINHR SEGGQGDV VEA H+ RPSGNL
Subjt:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL

Query:  SMQAQPSGD------NTKAGSDHSSSEKS
        SMQAQP GD      NTKAG D SSSE+S
Subjt:  SMQAQPSGD------NTKAGSDHSSSEKS

A0A6J1KQG8 la-related protein 1C-like

6.2e-40

75.19

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Query:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL
        V+RLTE+I  ILDALQSS++VEVKG+TVRRRNDYDRWIIRPG+IP +AGP LSPGSSN +MLAAGVQ IALEN NHR SEGGQG V V+A  +SRPSGNL
Subjt:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRGSEGGQGDVDVEAFHNSRPSGNL

Query:  SMQAQPSGD------NTKAGSDHSSSEKS
        SM AQP GD      NTK GSDHSSSE+S
Subjt:  SMQAQPSGD------NTKAGSDHSSSEKS

SwissProt top hits

e value

%identity

Alignment

Q8RWR2 La-related protein 1B

1.8e-07

38.14

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Query:  PVLVIPCFSVLGKSLLSIVVQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRG
        PV VI  F  L +         LT NIQTIL+AL+SS VVE++G+T+RRR D+D++++   + P  +GP  + G+SN   L + ++ + L   +  G
Subjt:  PVLVIPCFSVLGKSLLSIVVQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRG

Q94K80 La-related protein 1C

2.2e-05

47.06

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Query:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQ
        V  LT+NIQ I++ALQ+S  VEV+GD +R+R+++  W++R  + P  +GPQ
Subjt:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G35890.1 winged-helix DNA-binding transcription factor family protein

1.5e-06

47.06

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Query:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQ
        V  LT+NIQ I++ALQ+S  VEV+GD +R+R+++  W++R  + P  +GPQ
Subjt:  VQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQ

AT5G66100.1 winged-helix DNA-binding transcription factor family protein

1.3e-08

38.14

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Query:  PVLVIPCFSVLGKSLLSIVVQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRG
        PV VI  F  L +         LT NIQTIL+AL+SS VVE++G+T+RRR D+D++++   + P  +GP  + G+SN   L + ++ + L   +  G
Subjt:  PVLVIPCFSVLGKSLLSIVVQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIALENINHRG

Sequences

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CDS sequence

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mRNA sequence

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ATGAATAGAGACTTCACTAATGATGGTGTTGTGCCTTGGGATACAGTGCATCTTACTTACCCGGTGTTGGTGATACCATGTTTTTCTGTTTTAGGGAAAAGCCTTTTGTC
CATTGTTGTTCAACGCCTGACTGAAAATATTCAAACTATATTGGATGCATTGCAATCATCTACAGTTGTGGAAGTAAAGGGAGATACGGTAAGGAGGCGAAATGATTACG
ATAGATGGATTATTCGACCTGGTCAAATTCCTATTATTGCAGGCCCCCAATTAAGCCCCGGAAGTTCCAATCTGAATATGTTGGCAGCTGGTGTTCAAGGTATTGCACTA
GAGAATATTAATCATAGGGGCTCTGAAGGTGGACAGGGTGATGTTGATGTTGAGGCATTCCATAATAGTAGGCCATCTGGAAATTTGAGTATGCAGGCACAGCCATCTGG
TGATAATACCAAGGCAGGTTCAGATCATTCATCTTCTGAAAAGAGTTAGACCAAGTTAGTGCTGTGAACCCATGTCCTTTTGGAGGAAAACTAGATGTGGGTTGTAGAAG
ATTAAATGAGGAGATGTAAGTGACACGGTTTGCTCAATGAATATTCTCTTCTCTTGATGCCAAGTAAATTGGTAAACTGAAGTTGAAGAAGAGAAACAATTTTAAAAAGA
AAAAGGAAAAAAGAAAAACTAAAAGTCTATAACTTAAACTTAAAAAAGTTAAAAAAAAAGAAAAAAAGAAAAAAAGATAGAAAAAGGAAAAAAAAAAAAAAAGAAAAAAA
CTATATCAGAAGTTCCTTTTGTGGTGGAGGGATGCATTTTTGGTTTTGTGGTCTGTTGTTGGCTGGCTGGCATGGCTTGTTTCTTAAGTTCATATTCTTTTTTGTTGTGA
TTTTTCGTTTTTGGTGATGATGGCATGTACTTAATGTGGGGAATTTTGATTTGCTTCCCCATGGCTGCCCCTCAGCTTGTTTTTTGATATCTTTGGGGTCAGAGAACTTT
GAGTTCTTCGATGAGAGAACACGGTGATTTGCGGAAGAACTTGAAAGGTTTGGCTTTTGTTCTGCCATGGTGAATCTAAAGAGGTTGGCTTTTGTTGGATGGATGGATGT
TGTGGAGGCTGGGATGCATTTTCTGTTCTTCTATCTTGAAGGTTCTTCTTTCCATCTTCTTTTGTTATTGTTTTTCAGAGACTTACCCTGGCGTTTGCTCTATAAAATAT
CTTTCAACTTTGAATGCGGCATTAGGAACTTCTGAAGATTGGACAATGGACTGCATAAAACGCCCCCCCTCCCCCTAATTATGTTACGAAGTTTCTTCTCCAATTGATAT
TATTTTACTCGAGATATCTTCATTTTATTGATACGTTTTGGAACAAATATTCTTGAAAATGGGAATTTGCAATACCATTTACAGTGCTGCATTTCTCCCAAATTTTTGTG
ACTCCATTCATTCCCTCGTATCGCTTTTATTCTTTATCCTGTTTGATATGCTGCC

Protein sequence

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MNRDFTNDGVVPWDTVHLTYPVLVIPCFSVLGKSLLSIVVQRLTENIQTILDALQSSTVVEVKGDTVRRRNDYDRWIIRPGQIPIIAGPQLSPGSSNLNMLAAGVQGIAL
ENINHRGSEGGQGDVDVEAFHNSRPSGNLSMQAQPSGDNTKAGSDHSSSEKS

Lsi01G005750 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome