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Lsi01G005760 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G005760
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Genome locationchr01:4603649..4605481
RNA-Seq ExpressionLsi01G005760
SyntenyLsi01G005760
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603894.1 hypothetical protein SDJN03_04503, partial [Cucurbita argyrosperma subsp. sororia]1.6e-4078.22Show/hide
Query:  MLRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVIG
        M RAK+EGCETS HP LD AAMEREWCSVCLS VME + A++LPCQHEFHKICVERWFHECQ QKTC ICRF++ DED Q TEVLTEE VIW TS HVI 
Subjt:  MLRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVIG

Query:  Y
        Y
Subjt:  Y

XP_022132660.1 E3 ubiquitin-protein ligase RNF181 homolog [Momordica charantia]2.5e-3675.25Show/hide
Query:  RAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARV--LPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVIG
        RAK+EGCE   HP L   A+ REWCSVCLSKVMEGEE+RV  LPC HEFHKIC++RWFHEC  QKTCPIC+F++RD+D QTTEVLTEE VIWFTSFHV+G
Subjt:  RAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARV--LPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVIG

Query:  Y
        Y
Subjt:  Y

XP_022977421.1 uncharacterized protein LOC111477769 isoform X1 [Cucurbita maxima]9.7e-4177.23Show/hide
Query:  MLRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVIG
        M RAK+EGCETS HP LD AA+EREWCSVC S VME + A++LPCQHEFHKICVERWFHECQ QKTCPIC+F++RDED Q TEVLTEE VIW TS HVI 
Subjt:  MLRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVIG

Query:  Y
        Y
Subjt:  Y

XP_028093959.1 E3 ubiquitin-protein ligase RHA2A-like [Camellia sinensis]4.2e-2051.55Show/hide
Query:  QEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED-VQTTEVLTEETVIWFTSFHVIGY
        +EG   S H      A++ E C VCL ++ EGE+ RVLPC+HEFH+ CV RW + C  QKTCP+CRF + DE+  +  E LT+E VIWF+SFHV G+
Subjt:  QEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED-VQTTEVLTEETVIWFTSFHVIGY

XP_038883680.1 E3 ubiquitin-protein ligase znrf3-like [Benincasa hispida]2.2e-4587.88Show/hide
Query:  MLRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVI
        M RAK++GCETSTHP LDGAAME EWCSVCLSKVME EEARVLPCQHE HKICVERWFH+CQKQKTCPICRF+MRDEDVQTTEVLTEE VIWFT F VI
Subjt:  MLRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVI

TrEMBL top hitse value%identityAlignment
A0A4S4DKH4 RING-type domain-containing protein2.0e-2051.55Show/hide
Query:  QEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED-VQTTEVLTEETVIWFTSFHVIGY
        +EG   S H      A++ E C VCL ++ EGE+ RVLPC+HEFH+ CV RW + C  QKTCP+CRF + DE+  +  E LT+E VIWF+SFHV G+
Subjt:  QEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED-VQTTEVLTEETVIWFTSFHVIGY

A0A5B6YSP6 Putative E3 ubiquitin-protein ligase RHA2A (Fragment)4.5e-2060.24Show/hide
Query:  AMEREWCSVCLSKVME-GEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED-VQTTEVLTEETVIWFTSFHVIGY
        A+E E C VCLS++ E GE+ RVLPC HEFH++CV+RWF+ C   KTCP+CRF M DE+  Q  E LTEE VIWF+SFH  G+
Subjt:  AMEREWCSVCLSKVME-GEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED-VQTTEVLTEETVIWFTSFHVIGY

A0A5N6QUB8 RING-type domain-containing protein1.0e-1952.87Show/hide
Query:  NLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFM-RDEDVQTTEVLTEETVIWFTSFHVIGY
        +L  + +E E C VCLS++ +G++ RVLPC HEFH++CV+RWF+ C  +KTCP+CRF +  D++ +  EVLT+E VIWF+SFHV G+
Subjt:  NLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFM-RDEDVQTTEVLTEETVIWFTSFHVIGY

A0A6J1BT35 E3 ubiquitin-protein ligase RNF181 homolog1.2e-3675.25Show/hide
Query:  RAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARV--LPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVIG
        RAK+EGCE   HP L   A+ REWCSVCLSKVMEGEE+RV  LPC HEFHKIC++RWFHEC  QKTCPIC+F++RD+D QTTEVLTEE VIWFTSFHV+G
Subjt:  RAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARV--LPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVIG

Query:  Y
        Y
Subjt:  Y

A0A6J1IJV3 uncharacterized protein LOC111477769 isoform X14.7e-4177.23Show/hide
Query:  MLRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVIG
        M RAK+EGCETS HP LD AA+EREWCSVC S VME + A++LPCQHEFHKICVERWFHECQ QKTCPIC+F++RDED Q TEVLTEE VIW TS HVI 
Subjt:  MLRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVIG

Query:  Y
        Y
Subjt:  Y

SwissProt top hitse value%identityAlignment
Q5NCP0 E3 ubiquitin-protein ligase RNF435.9e-0934.62Show/hide
Query:  RAKQEGCE--TSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED
        R  Q GC    +  P+   +      C++CL +  EG+E RV+ C HEFH+ CV+ W ++    +TCP+C F + + D
Subjt:  RAKQEGCE--TSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED

Q68DV7 E3 ubiquitin-protein ligase RNF435.9e-0944.23Show/hide
Query:  CSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED
        C++CL +  EG+E RV+ C HEFH+ CV+ W H+    +TCP+C F + + D
Subjt:  CSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED

Q6NRV8 E3 ubiquitin-protein ligase arkadia-B1.3e-0841.43Show/hide
Query:  LRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICR
        L +KQ+G E +            E C++CLS + EGE+ R LPC H FH++CV++W       K CPICR
Subjt:  LRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICR

Q9M2S6 E3 ubiquitin-protein ligase SDIR17.8e-0940Show/hide
Query:  AKQEGCETSTHPNLDGAAMERE------WCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRF
        AKQ    +S    LD A   ++       CSVCL +V  GE  R LPC H+FH  C++ W    ++Q TCP+C+F
Subjt:  AKQEGCETSTHPNLDGAAMERE------WCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRF

Q9ZT50 E3 ubiquitin-protein ligase RHA2A2.7e-0953.85Show/hide
Query:  CSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED
        C VCLSK+ EGEE R L C+H FHK C+E W H  Q   TCP+CR  +  +D
Subjt:  CSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A1.9e-1053.85Show/hide
Query:  CSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED
        C VCLSK+ EGEE R L C+H FHK C+E W H  Q   TCP+CR  +  +D
Subjt:  CSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDED

AT1G53820.1 RING/U-box superfamily protein6.1e-0952.17Show/hide
Query:  CSVCLSKVMEGEEARVLP-CQHEFHKICVERWFHECQKQKTCPICR
        C+VCLS +++G++ARVLP C H FH  C++ WF   Q   TCP+CR
Subjt:  CSVCLSKVMEGEEARVLP-CQHEFHKICVERWFHECQKQKTCPICR

AT2G47560.1 RING/U-box superfamily protein1.4e-0850Show/hide
Query:  EREWCSVCLSKVMEGEEARVLP-CQHEFHKICVERWFHECQKQKTCPICR
        E+E CSVCLS+  E +E R+LP C H FH  C++ WF   + + TCP+CR
Subjt:  EREWCSVCLSKVMEGEEARVLP-CQHEFHKICVERWFHECQKQKTCPICR

AT3G51325.1 RING/U-box superfamily protein2.2e-1444.3Show/hide
Query:  GAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFH
        G   E E CSVCL ++   +  + LPC HEFH +CV+ WF+  +K   CP+CRF        TT +LT+E ++WF+SFH
Subjt:  GAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFH

AT3G55530.1 RING/U-box superfamily protein5.5e-1040Show/hide
Query:  AKQEGCETSTHPNLDGAAMERE------WCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRF
        AKQ    +S    LD A   ++       CSVCL +V  GE  R LPC H+FH  C++ W    ++Q TCP+C+F
Subjt:  AKQEGCETSTHPNLDGAAMERE------WCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTATGCTTAGGGCCAAGCAAGAAGGTTGTGAGACTTCGACACATCCCAACTTGGATGGTGCTGCTATGGAGAGGGAGTGGTGTTCAGTGTGTTTGTCAAAAGTAAT
GGAGGGAGAGGAAGCACGAGTTCTTCCTTGCCAACACGAGTTTCACAAGATATGCGTCGAGAGGTGGTTTCATGAATGCCAGAAACAAAAAACTTGTCCAATTTGTCGAT
TTTTTATGAGAGATGAAGATGTTCAGACAACAGAAGTGCTTACAGAGGAGACGGTAATCTGGTTCACTTCTTTTCATGTTATTGGTTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTATGCTTAGGGCCAAGCAAGAAGGTTGTGAGACTTCGACACATCCCAACTTGGATGGTGCTGCTATGGAGAGGGAGTGGTGTTCAGTGTGTTTGTCAAAAGTAAT
GGAGGGAGAGGAAGCACGAGTTCTTCCTTGCCAACACGAGTTTCACAAGATATGCGTCGAGAGGTGGTTTCATGAATGCCAGAAACAAAAAACTTGTCCAATTTGTCGAT
TTTTTATGAGAGATGAAGATGTTCAGACAACAGAAGTGCTTACAGAGGAGACGGTAATCTGGTTCACTTCTTTTCATGTTATTGGTTACTAAACTTTACTGAAAGTTCTC
ATCTATTTCTTTGTGGTACCTAACAACTTAGAGCGAGAGTCCACGAGAAAAATTTTAATGGTTTGTGTTACATTCATAAAAGTAACATGATAATGTTCTTTGGTATTGAA
TAGGGCACGGAATAAATGTGTACTTGCAATCTTCCTTGTAAATCAAGTAAATATCAACCATTGTTTGTTCTCCACGGTTTTAGACGTAATTTTGAAAGCAATGTACTTAC
CAATATTGCTCG
Protein sequenceShow/hide protein sequence
MIMLRAKQEGCETSTHPNLDGAAMEREWCSVCLSKVMEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFFMRDEDVQTTEVLTEETVIWFTSFHVIGY