; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G006550 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G006550
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionpleiotropic regulatory locus 1
Genome locationchr01:5261566..5261982
RNA-Seq ExpressionLsi01G006550
SyntenyLsi01G006550
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0000974 - Prp19 complex (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0080008 - Cul4-RING E3 ubiquitin ligase complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150502.1 protein pleiotropic regulatory locus 1 [Cucumis sativus]5.2e-6689.86Show/hide
Query:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS
        MA HPK+HS FASASADNIKKFNLPRGEFVHNMLSQQK+IINAM VNE+GVM TGGDNGSLWFWDWK+GHNFQQSQTIVQPGSLDSEA IYALSYDITGS
Subjt:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS

Query:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF
        RL+TCE DKTIKMWKEDENATP+THPLN KP KDIRRF
Subjt:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF

XP_008458420.1 PREDICTED: protein pleiotropic regulatory locus 1 [Cucumis melo]1.4e-6691.3Show/hide
Query:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS
        MA HPK+HS FASASADNIKKFNLPRGEFVHNMLSQQK+IINAM VNE+GVMVTGGDNGSLWFWDWK+GHNFQQSQTIVQPGSLDSEA IYALSYDITGS
Subjt:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS

Query:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF
        RLVTCE DKTIKMWKEDENATP+THPLN KP KDIRRF
Subjt:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF

XP_022138465.1 protein pleiotropic regulatory locus 1 [Momordica charantia]1.8e-6690.58Show/hide
Query:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS
        MA HPK+HS FASASADNIKKFNLPRGEFVHNMLSQQK+IINAM VNE+GVMVTGGDNGSLWFWDWK+GHNFQQSQTIVQPGSLDSEA IYALSYDITGS
Subjt:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS

Query:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF
        RL+TCE DKTIKMWKEDENATP+THPLN KP KDIRRF
Subjt:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF

XP_038874340.1 protein pleiotropic regulatory locus 1 [Benincasa hispida]3.1e-6690.58Show/hide
Query:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS
        MA HPK+HS FASASADNIKKFNLPRGEF+HNMLSQQK+IINAM VNE+GVMVTGGDNGSLWFWDWK+GHNFQQSQTIVQPGSLDSEA IYALSYDITGS
Subjt:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS

Query:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF
        RLVTCE DKTIKMWKEDENATP+THPLN KP KDIRRF
Subjt:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF

XP_042475868.1 protein pleiotropic regulatory locus 1 [Macadamia integrifolia]3.4e-6587.68Show/hide
Query:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS
        MAQHPK+H+ FASASADNIKKFNLP+GEF+HNMLSQQK+IINAM VNE+GVMVTGGDNGSLWFWDWK+GHNFQQSQTIVQPGSLDSEA IYALSYD+TGS
Subjt:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS

Query:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF
        RLVTCE DKTIKMWKEDENATP+THPLN KP K+ RRF
Subjt:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF

TrEMBL top hitse value%identityAlignment
A0A0A0KD37 WD_REPEATS_REGION domain-containing protein2.5e-6689.86Show/hide
Query:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS
        MA HPK+HS FASASADNIKKFNLPRGEFVHNMLSQQK+IINAM VNE+GVM TGGDNGSLWFWDWK+GHNFQQSQTIVQPGSLDSEA IYALSYDITGS
Subjt:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS

Query:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF
        RL+TCE DKTIKMWKEDENATP+THPLN KP KDIRRF
Subjt:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF

A0A1S3C7C3 protein pleiotropic regulatory locus 16.6e-6791.3Show/hide
Query:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS
        MA HPK+HS FASASADNIKKFNLPRGEFVHNMLSQQK+IINAM VNE+GVMVTGGDNGSLWFWDWK+GHNFQQSQTIVQPGSLDSEA IYALSYDITGS
Subjt:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS

Query:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF
        RLVTCE DKTIKMWKEDENATP+THPLN KP KDIRRF
Subjt:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF

A0A6J1CB66 protein pleiotropic regulatory locus 18.7e-6790.58Show/hide
Query:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS
        MA HPK+HS FASASADNIKKFNLPRGEFVHNMLSQQK+IINAM VNE+GVMVTGGDNGSLWFWDWK+GHNFQQSQTIVQPGSLDSEA IYALSYDITGS
Subjt:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS

Query:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF
        RL+TCE DKTIKMWKEDENATP+THPLN KP KDIRRF
Subjt:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF

A0A6J1H7V9 protein pleiotropic regulatory locus 16.2e-6588.41Show/hide
Query:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS
        MA HPK++S FASASADNIKKFNLPRGEF+HNMLSQQK+IINAM VNE+GVM TGGDNGSLWFWDWK+GHNFQQSQTIVQPGSLDSEA IYALSYDITGS
Subjt:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS

Query:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF
        RL+TCE DKTIKMWKEDENATP+THPLN KP KDIRRF
Subjt:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF

A0A6J1KVD4 protein pleiotropic regulatory locus 16.2e-6588.41Show/hide
Query:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS
        MA HPK++S FASASADNIKKFNLPRGEF+HNMLSQQK+IINAM VNE+GVM TGGDNGSLWFWDWK+GHNFQQSQTIVQPGSLDSEA IYALSYDITGS
Subjt:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS

Query:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF
        RL+TCE DKTIKMWKEDENATP+THPLN KP KDIRRF
Subjt:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF

SwissProt top hitse value%identityAlignment
O13615 Pre-mRNA-splicing factor prp51.4e-3450.36Show/hide
Query:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS
        ++ HP + + FAS S+DNIK +  P G F+ N      +I+N + +N   VM +G DNGS+ FWDWK+GH +Q+ Q++VQPGSLDSEA I+A S+D TG 
Subjt:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS

Query:  RLVTCETDKTIKMWKEDENATPQTHP-LNIKPSKDIRRF
        RL+TCE DK++K++K+ +NATP+THP L   PS   RR+
Subjt:  RLVTCETDKTIKMWKEDENATPQTHP-LNIKPSKDIRRF

O43660 Pleiotropic regulator 17.1e-3453.12Show/hide
Query:  HPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLV
        HP+ H  FAS S DNIK++  P G F+ N LS   +IIN + VN  GV+V+G DNG++  WDW+TG+NFQ+    VQPGSLDSE+ I+A ++D + SRL+
Subjt:  HPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLV

Query:  TCETDKTIKMWKEDENATPQTHPLNIKP
        T E DKTIK+++ED+ AT +THP++ KP
Subjt:  TCETDKTIKMWKEDENATPQTHPLNIKP

Q2KID6 Pleiotropic regulator 13.2e-3453.91Show/hide
Query:  HPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLV
        HP+ H  FAS S DNIK++  P G F+ N LS   +IIN + VN  GV+V+G DNG++  WDW+TG+NFQ+    VQPGSLDSE+ I+A ++D + SRL+
Subjt:  HPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLV

Query:  TCETDKTIKMWKEDENATPQTHPLNIKP
        T E DKTIK++KED+ AT +THP++ KP
Subjt:  TCETDKTIKMWKEDENATPQTHPLNIKP

Q39190 Protein pleiotropic regulator PRL23.2e-5876.81Show/hide
Query:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS
        MA HPK++  F SASADNIKKF+LP+GEF HNMLS Q+ IINA+ VNE GVMVTGGD G LWFWDWK+GHNFQ+++TIVQPGSL+SEA IYA  YD TGS
Subjt:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS

Query:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF
        RLVTCE DKTIKMWKEDE+ATP+THPLN KP K+IRRF
Subjt:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF

Q42384 Protein pleiotropic regulatory locus 13.1e-6179.71Show/hide
Query:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS
        M  HPK+++ FASASADN KKF+LP+GEF HNMLSQQK+IINAM VNE GVMVTGGDNGS+WFWDWK+GH+FQQS+TIVQPGSL+SEA IYA  YD TGS
Subjt:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS

Query:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF
        RLVTCE DKTIKMWKEDENATP+THP+N KP K+IRRF
Subjt:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF

Arabidopsis top hitse value%identityAlignment
AT3G16650.1 Transducin/WD40 repeat-like superfamily protein2.3e-5976.81Show/hide
Query:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS
        MA HPK++  F SASADNIKKF+LP+GEF HNMLS Q+ IINA+ VNE GVMVTGGD G LWFWDWK+GHNFQ+++TIVQPGSL+SEA IYA  YD TGS
Subjt:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS

Query:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF
        RLVTCE DKTIKMWKEDE+ATP+THPLN KP K+IRRF
Subjt:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF

AT4G15900.1 pleiotropic regulatory locus 12.2e-6279.71Show/hide
Query:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS
        M  HPK+++ FASASADN KKF+LP+GEF HNMLSQQK+IINAM VNE GVMVTGGDNGS+WFWDWK+GH+FQQS+TIVQPGSL+SEA IYA  YD TGS
Subjt:  MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGS

Query:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF
        RLVTCE DKTIKMWKEDENATP+THP+N KP K+IRRF
Subjt:  RLVTCETDKTIKMWKEDENATPQTHPLNIKPSKDIRRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACAACATCCTAAACAGCACAGTTTCTTTGCATCTGCTTCAGCTGACAACATCAAGAAATTTAATCTTCCCAGAGGGGAGTTTGTGCATAACATGCTTTCTCAGCA
GAAGAGTATAATCAATGCGATGGATGTCAATGAGAAGGGTGTTATGGTGACTGGTGGTGACAATGGTAGTTTATGGTTTTGGGATTGGAAGACTGGCCATAACTTTCAGC
AATCACAAACAATTGTTCAGCCTGGCTCGTTGGATAGTGAAGCTGCTATTTATGCTCTGTCTTACGACATCACTGGTTCGAGGCTTGTTACTTGTGAAACCGACAAAACT
ATTAAAATGTGGAAAGAGGATGAAAATGCTACCCCTCAAACTCATCCCCTCAACATCAAGCCATCCAAAGATATCAGAAGATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACAACATCCTAAACAGCACAGTTTCTTTGCATCTGCTTCAGCTGACAACATCAAGAAATTTAATCTTCCCAGAGGGGAGTTTGTGCATAACATGCTTTCTCAGCA
GAAGAGTATAATCAATGCGATGGATGTCAATGAGAAGGGTGTTATGGTGACTGGTGGTGACAATGGTAGTTTATGGTTTTGGGATTGGAAGACTGGCCATAACTTTCAGC
AATCACAAACAATTGTTCAGCCTGGCTCGTTGGATAGTGAAGCTGCTATTTATGCTCTGTCTTACGACATCACTGGTTCGAGGCTTGTTACTTGTGAAACCGACAAAACT
ATTAAAATGTGGAAAGAGGATGAAAATGCTACCCCTCAAACTCATCCCCTCAACATCAAGCCATCCAAAGATATCAGAAGATTTTAG
Protein sequenceShow/hide protein sequence
MAQHPKQHSFFASASADNIKKFNLPRGEFVHNMLSQQKSIINAMDVNEKGVMVTGGDNGSLWFWDWKTGHNFQQSQTIVQPGSLDSEAAIYALSYDITGSRLVTCETDKT
IKMWKEDENATPQTHPLNIKPSKDIRRF