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Lsi01G006750 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G006750
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionribosomal protein L6 family protein
Genome locationchr01:5448801..5452124
RNA-Seq ExpressionLsi01G006750
SyntenyLsi01G006750
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000702 - Ribosomal protein L6
IPR002358 - Ribosomal protein L6, conserved site
IPR019906 - Ribosomal protein L6, bacterial-type
IPR020040 - Ribosomal protein L6, alpha-beta domain
IPR036789 - Ribosomal protein L6, alpha-beta domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB8994308.1 hypothetical protein FH972_026898 [Carpinus fangiana]6.1e-4394.62Show/hide
Query:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        +IVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTG+DK RVHQFAA+VRSCKPPEVYKGKGIMY+DEVIKKKQGKKSK
Subjt:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

XP_002310235.1 uncharacterized protein LOC7480126 [Populus trichocarpa]8.0e-4396.77Show/hide
Query:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        +IVGVGYKARAEA GRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
Subjt:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

XP_008440709.1 PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis melo]1.6e-4395.7Show/hide
Query:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        +IVGVGYKARAEAAGRLL+LKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAA+VRSCKPPEVYKGKGIMYIDEVIK+KQGKKSK
Subjt:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

XP_021593538.1 uncharacterized protein LOC110600918 [Manihot esculenta]4.7e-4396.77Show/hide
Query:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        +IVGVGYKARAEA GRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
Subjt:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

XP_022950399.1 uncharacterized protein LOC111453510 [Cucurbita moschata]6.1e-4395.7Show/hide
Query:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        +IVGVGYKARAEAAGRLL+LKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAA+VRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
Subjt:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

TrEMBL top hitse value%identityAlignment
A0A1S3B2D0 60S ribosomal protein L6, mitochondrial7.8e-4495.7Show/hide
Query:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        +IVGVGYKARAEAAGRLL+LKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAA+VRSCKPPEVYKGKGIMYIDEVIK+KQGKKSK
Subjt:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

A0A2C9UGD8 Ribosomal_L6 domain-containing protein2.3e-4396.77Show/hide
Query:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        +IVGVGYKARAEA GRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
Subjt:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

A0A5D3CL55 60S ribosomal protein L67.8e-4495.7Show/hide
Query:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        +IVGVGYKARAEAAGRLL+LKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAA+VRSCKPPEVYKGKGIMYIDEVIK+KQGKKSK
Subjt:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

A0A5N6L5L9 Ribosomal_L6 domain-containing protein3.0e-4394.62Show/hide
Query:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        +IVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTG+DK RVHQFAA+VRSCKPPEVYKGKGIMY+DEVIKKKQGKKSK
Subjt:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

A0A6J1IQJ4 uncharacterized protein LOC1114785183.0e-4395.7Show/hide
Query:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        +IVGVGYKARAEAAGRLL+LKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAA+VRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
Subjt:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

SwissProt top hitse value%identityAlignment
A7HM37 50S ribosomal protein L64.6e-1749.47Show/hide
Query:  QENRIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKS
        +E  IVGVGY  RA+  G  L + LGY+H+VE  VP  V+V     N +  +GIDK RV Q AA +R  + P  Y GKGI Y+DEV+K K+GKK+
Subjt:  QENRIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKS

B7IHW1 50S ribosomal protein L63.5e-1741.59Show/hide
Query:  TLWSIFLIRLSDSRPYGDQENRIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMY
        T W +F   +        +E  IVG+GY  RA+  G+ L + LGY+H VE+ +P  V+V     N +  +GIDK RV Q AA +R  + P VY GKGI Y
Subjt:  TLWSIFLIRLSDSRPYGDQENRIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMY

Query:  IDEVIKKKQGKKS
        + EV++ K+GKK+
Subjt:  IDEVIKKKQGKKS

P26861 60S ribosomal protein L6, mitochondrial3.6e-3066.67Show/hide
Query:  IVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        I+GVGYKA   A G +L+LKLG+SHE+ L V P+VRVFC K N++CCTG+D  +V QFAA V+SCKPPEVYKGKGI Y +E+I KKQGKK
Subjt:  IVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

P82193 50S ribosomal protein L6, chloroplastic4.2e-1846.39Show/hide
Query:  DQENRIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        +++ ++VGVGY+A  E  G+ L L LG+SH V + +P  ++V   +N  V  +G DK  V QFAA++RS +PPE YKGKG+ Y+DEV+++K+GK  K
Subjt:  DQENRIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

Q2JQN4 50S ribosomal protein L64.6e-1747.83Show/hide
Query:  IVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        +VGVGY  RA   G  L L +GYSH VE+  PP +++    NNV+  +GIDK  V   AA +R+ +PPE YKGKGI Y+ E +++K GK  K
Subjt:  IVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

Arabidopsis top hitse value%identityAlignment
AT1G05190.1 Ribosomal protein L6 family5.6e-1844.57Show/hide
Query:  IVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        +VGVGY+A  +  G+ L L LG+SH V++ +P +++V   +N  +  +G DK  + QFAA+VR  +PPE YKGKG+ Y DE++++K+GK  K
Subjt:  IVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

AT2G18400.1 ribosomal protein L6 family protein5.9e-4489.25Show/hide
Query:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        +IVGVGYKARAE AGR L+LKLGYSHEVEL VPPAVRVFCFKNNVVCCTGIDK RVHQFAA+VRSCKPPE YKGKGIMY DEV+KKKQGKKSK
Subjt:  RIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTCCTGGCGTTGGCGCCAATCGCTTTCCTTGATCATGATGCCGCCGCATTCCCAACCATTACCAGCCACTGCACCCGCCCCGCAGCACGCCGCCGTTCGCCCCA
TCCCGCACAACGTTACTGCCCGACGACGCTAATTTCAGATCCCCAAGGTATTTCTTGCAATCACACTCGGCCTCAGCTTGTCCCAATCTCTCTCTGTGGTAGCATAATCT
TCAATCGCAAGCCCCAACAATCCATCCTCTCTGTTCCGTCCTCTCTCGATCGTCCCCCTCAATCTCACTCACTCGGCCTACTTCAAGCAGACATCCTTGAGGACCTTCAT
AGAATGATTGGTGAGTCGGAGGGCTTAACGTTGTGGAGTATCTTTCTCATCAGGTTATCTGATTCTCGTCCATATGGGGATCAAGAAAATAGGATTGTGGGAGTTGGTTA
CAAAGCCAGAGCAGAAGCAGCAGGACGTCTTTTGTTTCTTAAATTGGGATACAGCCATGAAGTTGAACTAACCGTTCCACCGGCTGTTCGCGTCTTTTGCTTCAAAAACA
ATGTTGTGTGCTGCACAGGGATTGACAAATATAGAGTGCACCAATTTGCTGCTTCAGTTCGTAGCTGTAAGCCACCAGAAGTATACAAAGGCAAGGGCATCATGTATATC
GACGAGGTCATAAAGAAGAAACAAGGAAAGAAGTCTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTCCTGGCGTTGGCGCCAATCGCTTTCCTTGATCATGATGCCGCCGCATTCCCAACCATTACCAGCCACTGCACCCGCCCCGCAGCACGCCGCCGTTCGCCCCA
TCCCGCACAACGTTACTGCCCGACGACGCTAATTTCAGATCCCCAAGGTATTTCTTGCAATCACACTCGGCCTCAGCTTGTCCCAATCTCTCTCTGTGGTAGCATAATCT
TCAATCGCAAGCCCCAACAATCCATCCTCTCTGTTCCGTCCTCTCTCGATCGTCCCCCTCAATCTCACTCACTCGGCCTACTTCAAGCAGACATCCTTGAGGACCTTCAT
AGAATGATTGGTGAGTCGGAGGGCTTAACGTTGTGGAGTATCTTTCTCATCAGGTTATCTGATTCTCGTCCATATGGGGATCAAGAAAATAGGATTGTGGGAGTTGGTTA
CAAAGCCAGAGCAGAAGCAGCAGGACGTCTTTTGTTTCTTAAATTGGGATACAGCCATGAAGTTGAACTAACCGTTCCACCGGCTGTTCGCGTCTTTTGCTTCAAAAACA
ATGTTGTGTGCTGCACAGGGATTGACAAATATAGAGTGCACCAATTTGCTGCTTCAGTTCGTAGCTGTAAGCCACCAGAAGTATACAAAGGCAAGGGCATCATGTATATC
GACGAGGTCATAAAGAAGAAACAAGGAAAGAAGTCTAAATAA
Protein sequenceShow/hide protein sequence
MKFLALAPIAFLDHDAAAFPTITSHCTRPAARRRSPHPAQRYCPTTLISDPQGISCNHTRPQLVPISLCGSIIFNRKPQQSILSVPSSLDRPPQSHSLGLLQADILEDLH
RMIGESEGLTLWSIFLIRLSDSRPYGDQENRIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYI
DEVIKKKQGKKSK