CuGenDBv2

Gene ID	Lsi01G006840
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Acidic leucine-rich nuclear phosphoprotein 32-related protein
Genome location	chr01:5499335..5499817
RNA-Seq Expression	Lsi01G006840
Synteny	Lsi01G006840
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6603983.1 hypothetical protein SDJN03_04592, partial [Cucurbita argyrosperma subsp. sororia]

4.9e-76

92.5

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Query:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG
        MLLSS SL+R LPVN LN  CKPANPR AVK+QAMAKEGS+SEGGIAET+AIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYL VVGIVG
Subjt:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG

Query:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
        WS YTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
Subjt:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG

XP_008440700.1 PREDICTED: uncharacterized protein LOC103485040 [Cucumis melo]

9.9e-77

93.75

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Query:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG
        MLLSS SLLR LPV   NLACKPANPR  VK+QAMAKEGS+SEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYL VVGIVG
Subjt:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG

Query:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
        WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
Subjt:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG

XP_022950150.1 uncharacterized protein LOC111453326 [Cucurbita moschata]

4.9e-76

92.5

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Query:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG
        MLLSS SL+R LPVN LN  CKPANPR AVK+QAMAKEGS+SEGGIAET+AIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYL VVGIVG
Subjt:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG

Query:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
        WS YTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
Subjt:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG

XP_031744055.1 uncharacterized protein LOC101218070 [Cucumis sativus]

8.4e-76

92.5

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Query:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG
        MLLSS SLL+ LPVN  NLACKPANPR  VK+QAMAKEGS+SEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYL VVGIVG
Subjt:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG

Query:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
        WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQY +QGYIPGPLPADQCFG
Subjt:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG

XP_038882163.1 uncharacterized protein LOC120073396 [Benincasa hispida]

6.9e-78

94.38

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Query:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG
        MLLSS SLLR LPVN LNLACKPANPR  VK+QAMAKEGS+SEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEG+SYL VVGIVG
Subjt:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG

Query:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
        WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
Subjt:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KKC0 Uncharacterized protein

4.1e-76

92.5

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Query:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG
        MLLSS SLL+ LPVN  NLACKPANPR  VK+QAMAKEGS+SEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYL VVGIVG
Subjt:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG

Query:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
        WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQY +QGYIPGPLPADQCFG
Subjt:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG

A0A1S3B1A0 uncharacterized protein LOC103485040

4.8e-77

93.75

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Query:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG
        MLLSS SLLR LPV   NLACKPANPR  VK+QAMAKEGS+SEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYL VVGIVG
Subjt:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG

Query:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
        WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
Subjt:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG

A0A5A7T239 Uncharacterized protein

4.8e-77

93.75

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Query:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG
        MLLSS SLLR LPV   NLACKPANPR  VK+QAMAKEGS+SEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYL VVGIVG
Subjt:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG

Query:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
        WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
Subjt:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG

A0A6J1GEW2 uncharacterized protein LOC111453326

2.4e-76

92.5

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Query:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG
        MLLSS SL+R LPVN LN  CKPANPR AVK+QAMAKEGS+SEGGIAET+AIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYL VVGIVG
Subjt:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG

Query:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
        WS YTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
Subjt:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG

A0A6J1IN27 uncharacterized protein LOC111478511

1.2e-75

91.88

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Query:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG
        MLLSS SL+R LPVN LN  CKPANPR AVK+QAMAKEGS+SEGGIAET+AIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYL VVGIVG
Subjt:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG

Query:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
        WS+YTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPA QCFG
Subjt:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G50685.1 unknown protein

3.9e-55

69.38

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Query:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG
        +LLS  S   P   +  NL  +   P    ++ A AK+ +D+ GG  ET AIAG LV+TPVIGWSLYTLKTTGCGLPPGP G +GALEGVSYL VVGIVG
Subjt:  MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVG

Query:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG
        WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLS+LAILVVFG+Q+ + G +PGPLP+DQCFG
Subjt:  WSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG

Sequences

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CDS sequence

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ATGCTACTGTCATCACCCTCTTTATTGCGACCATTGCCGGTTAATCATTTGAATTTGGCATGTAAACCGGCGAATCCACGGATGGCAGTGAAGCTTCAGGCCATGGCAAA
GGAAGGAAGCGATAGCGAAGGGGGCATTGCAGAGACGGTGGCCATAGCTGGTGGGTTAGTGGCGACCCCAGTGATCGGTTGGTCGCTATATACCCTGAAGACAACCGGGT
GCGGGCTGCCGCCGGGGCCAGGTGGGTCACTCGGCGCACTGGAAGGCGTCAGCTACTTGACGGTGGTGGGCATCGTGGGTTGGTCCCTGTACACGAAGACGAAAACTGGA
TCGGGTCTGCCCAACGGCCCTTTCGGGCTACTGGGCGCCGTCGAAGGTCTGTCATACTTGAGTTTGTTGGCCATCTTGGTCGTTTTTGGGTTGCAGTACTTTGAACAGGG
CTACATCCCCGGCCCTCTTCCGGCCGATCAGTGCTTTGGTTGA

mRNA sequence

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Protein sequence

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MLLSSPSLLRPLPVNHLNLACKPANPRMAVKLQAMAKEGSDSEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLTVVGIVGWSLYTKTKTG
SGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG

Lsi01G006840 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome