; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G007320 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G007320
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionE3 ubiquitin-protein ligase RHA2B-like
Genome locationchr01:5773158..5775010
RNA-Seq ExpressionLsi01G007320
SyntenyLsi01G007320
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036272.1 putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa]7.4e-7996.75Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADK VITTAQFLKLIE+KNP IRFSNKVT S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

XP_008440648.1 PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo]3.7e-7896.73Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADK VITTAQFLKLIE+KNP IRFSNKVT S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH

XP_022132528.1 E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia]3.5e-7692.86Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRP ADK VITT Q+ KLIEE+NP IRFSNK+TSS ADQCAVCLSEFEEG+KVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

XP_022963436.1 E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita moschata]5.3e-7794.16Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DK VI TAQFLKLIEEKNP IRFSNK+TSS ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

XP_038883588.1 E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida]2.0e-7995.54Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADK V+TTAQFLKLIEEKNP IRFSNK+TSS ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGLFL
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG+ L
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGLFL

TrEMBL top hitse value%identityAlignment
A0A0A0KM08 RING-type domain-containing protein2.3e-7895.45Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPN+DK VITTAQF KLIE+KNP IRFSNKVT S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

A0A1S3B160 probable E3 ubiquitin-protein ligase RHA2B1.8e-7896.73Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADK VITTAQFLKLIE+KNP IRFSNKVT S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH

A0A5A7SYH1 Putative E3 ubiquitin-protein ligase RHA2B3.6e-7996.75Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADK VITTAQFLKLIE+KNP IRFSNKVT S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

A0A6J1BWI1 E3 ubiquitin-protein ligase RHA2B-like1.7e-7692.86Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRP ADK VITT Q+ KLIEE+NP IRFSNK+TSS ADQCAVCLSEFEEG+KVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

A0A6J1HG49 E3 ubiquitin-protein ligase RHA2B-like isoform X12.6e-7794.16Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DK VI TAQFLKLIEEKNP IRFSNK+TSS ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

SwissProt top hitse value%identityAlignment
Q0VD51 E3 ubiquitin-protein ligase RNF131.2e-1050Show/hide
Query:  DQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP
        D CA+CL E+E+G+K+R L C+H +H  C+D WL     TCP+C+ KV+P
Subjt:  DQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP

Q8LPN7 E3 ubiquitin-protein ligase RING1-like4.0e-1142.42Show/hide
Query:  PAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD
        P ++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR ++  DD
Subjt:  PAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD

Q9XF92 Brassinosteroid-responsive RING protein 15.3e-1143.42Show/hide
Query:  LIEEKNPAIRFSNKVTS--SFADQCAVCLSEFEEGEKVRKLQ-CNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDI
        LI E  P I+F     S     + CAVCL EFE  +++R L+ C H FH+ CLD W+     TCPLCR+  +PD++
Subjt:  LIEEKNPAIRFSNKVTS--SFADQCAVCLSEFEEGEKVRKLQ-CNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDI

Q9ZT50 E3 ubiquitin-protein ligase RHA2A3.3e-1356.14Show/hide
Query:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR
        C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Subjt:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR

Q9ZU51 E3 ubiquitin-protein ligase RHA2B1.8e-1440.59Show/hide
Query:  LLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL
        LL  F   +R++  L P++   V+ T+    L ++ N    FS + + + A  C VCLS+ + GE+VRKL C H FHK CL+ WL+     CPLCRS +L
Subjt:  LLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL

Query:  P
        P
Subjt:  P

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A2.3e-1456.14Show/hide
Query:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR
        C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Subjt:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR

AT2G01150.1 RING-H2 finger protein 2B1.2e-1540.59Show/hide
Query:  LLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL
        LL  F   +R++  L P++   V+ T+    L ++ N    FS + + + A  C VCLS+ + GE+VRKL C H FHK CL+ WL+     CPLCRS +L
Subjt:  LLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL

Query:  P
        P
Subjt:  P

AT3G19950.1 RING/U-box superfamily protein2.9e-1242.42Show/hide
Query:  PAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD
        P ++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR ++  DD
Subjt:  PAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD

AT3G61460.1 brassinosteroid-responsive RING-H23.7e-1243.42Show/hide
Query:  LIEEKNPAIRFSNKVTS--SFADQCAVCLSEFEEGEKVRKLQ-CNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDI
        LI E  P I+F     S     + CAVCL EFE  +++R L+ C H FH+ CLD W+     TCPLCR+  +PD++
Subjt:  LIEEKNPAIRFSNKVTS--SFADQCAVCLSEFEEGEKVRKLQ-CNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDI

AT5G45290.1 RING/U-box superfamily protein2.2e-1241.43Show/hide
Query:  IRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYH
        I+   K  S    QC +CL E+EE + +R L C+H FHK C+D WLK     CPLCR  +   D  +  H
Subjt:  IRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACGATCTTCGGCTTGAG
ACCTAACGCCGACAAGTGCGTAATCACGACGGCGCAGTTTTTGAAACTCATCGAGGAGAAGAATCCGGCGATTCGATTCTCCAATAAGGTCACCTCGAGTTTTGCCGATC
AGTGTGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCACAAGGATTGCCTTGATAATTGGTTGAAACTCTGTTTT
GCTACCTGTCCGCTTTGCCGTAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCACAGGCTGCGAGACCGTGTAGAGTACGACGGCAGCGATGAGGAGCTCATCTT
TTTGTTATCGGCATTACATGGACTGTTCTTGAGAATAAGTTTGAAACATATCCTAATTCCAATCCTCAATGGTTGTGGAGCTACAGTACTTCGCATGATGTGCCGAATTG
TTCTGTATGTCGGACATTTGCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACGATCTTCGGCTTGAG
ACCTAACGCCGACAAGTGCGTAATCACGACGGCGCAGTTTTTGAAACTCATCGAGGAGAAGAATCCGGCGATTCGATTCTCCAATAAGGTCACCTCGAGTTTTGCCGATC
AGTGTGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCACAAGGATTGCCTTGATAATTGGTTGAAACTCTGTTTT
GCTACCTGTCCGCTTTGCCGTAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCACAGGCTGCGAGACCGTGTAGAGTACGACGGCAGCGATGAGGAGCTCATCTT
TTTGTTATCGGCATTACATGGACTGTTCTTGAGAATAAGTTTGAAACATATCCTAATTCCAATCCTCAATGGTTGTGGAGCTACAGTACTTCGCATGATGTGCCGAATTG
TTCTGTATGTCGGACATTTGCAATAA
Protein sequenceShow/hide protein sequence
MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKCVITTAQFLKLIEEKNPAIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCF
ATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGLFLRISLKHILIPILNGCGATVLRMMCRIVLYVGHLQ