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Lsi01G007340 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G007340
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionBnaCnng13060D protein
Genome locationchr01:5788426..5789669
RNA-Seq ExpressionLsi01G007340
SyntenyLsi01G007340
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF1728916.1 unnamed protein product [Brassica napus]7.4e-1557.78Show/hide
Query:  DALCPIILDNTCILYITATAGTESSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR
        DAL PII DN CIL ITA AGTE +               + P   I      +E G C SPSVADHPL PATDHRLGKLLPHQLANQTR
Subjt:  DALCPIILDNTCILYITATAGTESSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR

CDY45547.1 BnaCnng13060D [Brassica napus]7.4e-1557.78Show/hide
Query:  DALCPIILDNTCILYITATAGTESSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR
        DAL PII DN CIL ITA AGTE +               + P   I      +E G C SPSVADHPL PATDHRLGKLLPHQLANQTR
Subjt:  DALCPIILDNTCILYITATAGTESSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR

CDY63600.1 BnaUnng00870D [Brassica napus]7.4e-1557.78Show/hide
Query:  DALCPIILDNTCILYITATAGTESSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR
        DAL PII DN CIL ITA AGTE +               + P   I      +E G C SPSVADHPL PATDHRLGKLLPHQLANQTR
Subjt:  DALCPIILDNTCILYITATAGTESSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR

KAF2613148.1 hypothetical protein F2Q70_00012149 [Brassica cretica]1.5e-1556.52Show/hide
Query:  PTDALCPIILDNTCILYITATAGTESSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR
        PTDAL PII DN CIL ITA AGTE +               + P   I      +E G C SPSVADHP+ PATDHRLGKLLPHQLANQT+
Subjt:  PTDALCPIILDNTCILYITATAGTESSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR

KAF3622520.1 30S ribosomal protein S12, chloroplastic [Capsicum annuum]6.9e-2180Show/hide
Query:  SSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQ
        SSRP GLLPPRGIAPSGF PL+KI HCCL QE GSC SPSV DH L  AT+HRLGKLLPHQL+NQ
Subjt:  SSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQ

TrEMBL top hitse value%identityAlignment
A0A0D3BH89 Uncharacterized protein3.6e-1557.78Show/hide
Query:  DALCPIILDNTCILYITATAGTESSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR
        DAL PII DN CIL ITA AGTE +               + P   I      +E G C SPSVADHPL PATDHRLGKLLPHQLANQTR
Subjt:  DALCPIILDNTCILYITATAGTESSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR

A0A3P6D4D0 Uncharacterized protein3.6e-1557.78Show/hide
Query:  DALCPIILDNTCILYITATAGTESSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR
        DAL PII DN CIL ITA AGTE +               + P   I      +E G C SPSVADHPL PATDHRLGKLLPHQLANQTR
Subjt:  DALCPIILDNTCILYITATAGTESSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR

A0A6N2K292 Uncharacterized protein9.7e-2180.6Show/hide
Query:  SSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR
        SSRPVGLLPPRGIAPS FRPL+KI HCCL         PSVADHPL PATDHRLGKLLPHQLANQTR
Subjt:  SSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR

A0A6N2K9N9 Uncharacterized protein2.9e-1778.69Show/hide
Query:  LLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR
        LLPPRGIAPS FRPL+KI HCCL         PSVADHPL PATDHRLGKLLPHQLANQTR
Subjt:  LLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR

A0A6N2KRR2 Uncharacterized protein7.5e-2176.06Show/hide
Query:  AGTESSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR
        +G  SSRPVGLLPPRGIAPS FRPL+KI HCCL         PSVADHPL PATD RLGKLLPHQLANQTR
Subjt:  AGTESSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACCTACAGACGCTTTATGTCCAATCATTCTGGATAACACTTGCATCCTCTATATTACCGCGACTGCTGGCACAGAAAGTTCACGACCCGTAGGCCTTCTTCCTCC
ACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCAGAAAATTCGCCACTGTTGCCTCCTGCAGGAGTATGGGTCGTGTCCCAGTCCCAGTGTGGCTGATCATCCTCTCG
AACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAATTGCTCGAGCCAAGGCGTTAGATCAAAATCCTTCATCTGTTTTGGAT
ATAAATTCGGGTTTTAGAGTTGGGCCCAATGTCATTTACGAGGAGAATGAACTGTTTGGTATCAAACCAAACCTCCACCAAACTCATAAATATTTGGCG
mRNA sequenceShow/hide mRNA sequence
GTTTACCCGAAATCTTCGTAACATTTATAACTAGGGTTGGCTTCGGATTTGACGACCGGTTTAAAATGTCACCTACAGACGCTTTATGTCCAATCATTCTGGATAACACT
TGCATCCTCTATATTACCGCGACTGCTGGCACAGAAAGTTCACGACCCGTAGGCCTTCTTCCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCAGAAAATTCG
CCACTGTTGCCTCCTGCAGGAGTATGGGTCGTGTCCCAGTCCCAGTGTGGCTGATCATCCTCTCGAACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAAC
TAGCTAATCAGACGCGAATTGCTCGAGCCAAGGCGTTAGATCAAAATCCTTCATCTGTTTTGGATATAAATTCGGGTTTTAGAGTTGGGCCCAATGTCATTTACGAGGAG
AATGAACTGTTTGGTATCAAACCAAACCTCCACCAAACTCATAAATATTTGGCG
Protein sequenceShow/hide protein sequence
MSPTDALCPIILDNTCILYITATAGTESSRPVGLLPPRGIAPSGFRPLQKIRHCCLLQEYGSCPSPSVADHPLEPATDHRLGKLLPHQLANQTRIARAKALDQNPSSVLD
INSGFRVGPNVIYEENELFGIKPNLHQTHKYLA