CuGenDBv2

Gene ID	Lsi01G007440
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	protein TAPETUM DETERMINANT 1-like
Genome location	chr01:5844475..5844999
RNA-Seq Expression	Lsi01G007440
Synteny	Lsi01G007440
Gene Ontology terms	GO:0001709 - cell fate determination (biological process)
InterPro domains	IPR040361 - Tapetum determinant 1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7026827.1 hypothetical protein SDJN02_10834, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.4e-42

81.55

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Query:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI
        GN QC L+NITI+Q MTGFQIHGMTEW  T+S  C+CSQSEVK+DC+GFQTTESIDP ILAI+DTECLVNNGLPIF+S PITFTYAQ+PQFNFKPISSQI
Subjt:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI

Query:  SCS
        +CS
Subjt:  SCS

KAG7026828.1 Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.7e-43

81.55

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Query:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI
        GNCQC+ N+I ISQKMTGFQIHGMTEW VTIS NC+CSQSEVK+DCKGFQTT+SIDPSILA++DTECLVNNGLPIF S P+ FTYAQDP+F+FK ISSQI
Subjt:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI

Query:  SCS
        +CS
Subjt:  SCS

XP_008440637.1 PREDICTED: protein TAPETUM DETERMINANT 1-like [Cucumis melo]

5.5e-44

83.5

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Query:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI
        GNCQC+LNNITISQKMTGFQIHGMTEW VTI+ NC+CSQS++K+DCKGF TT SIDPSIL+ISD ECLVNNG PIF+SKPITF YAQ P+FNFKPISSQI
Subjt:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI

Query:  SCS
        SCS
Subjt:  SCS

XP_031742370.1 uncharacterized protein At1g05835-like [Cucumis sativus]

2.7e-43

81.55

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Query:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI
        GNCQC LNNI ISQ MTGFQIHGMTEWKVTI+ NC+CSQS++K+DCKGF TT SIDPSILAISD+ECLVNNG PIF+S+PITF YAQ P+FNFKP+SSQI
Subjt:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI

Query:  SCS
        SCS
Subjt:  SCS

XP_038881121.1 uncharacterized protein At1g05835-like [Benincasa hispida]

1.7e-48

90.29

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Query:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI
        GNCQC+LNNITISQ+MTGFQIHGMTEWKVTIS NC CSQSEVK+DCKGFQTTESIDPSILA+ DTECLVNNGLPIF+S PITF+YAQDPQFNFKPISSQI
Subjt:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI

Query:  SCS
        SCS
Subjt:  SCS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KLZ6 Uncharacterized protein

1.3e-43

81.55

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Query:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI
        GNCQC LNNI ISQ MTGFQIHGMTEWKVTI+ NC+CSQS++K+DCKGF TT SIDPSILAISD+ECLVNNG PIF+S+PITF YAQ P+FNFKP+SSQI
Subjt:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI

Query:  SCS
        SCS
Subjt:  SCS

A0A1S3B1L8 protein TAPETUM DETERMINANT 1-like

2.7e-44

83.5

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Query:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI
        GNCQC+LNNITISQKMTGFQIHGMTEW VTI+ NC+CSQS++K+DCKGF TT SIDPSIL+ISD ECLVNNG PIF+SKPITF YAQ P+FNFKPISSQI
Subjt:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI

Query:  SCS
        SCS
Subjt:  SCS

A0A5D3CMA8 Protein TAPETUM DETERMINANT 1-like

2.7e-44

83.5

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Query:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI
        GNCQC+LNNITISQKMTGFQIHGMTEW VTI+ NC+CSQS++K+DCKGF TT SIDPSIL+ISD ECLVNNG PIF+SKPITF YAQ P+FNFKPISSQI
Subjt:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI

Query:  SCS
        SCS
Subjt:  SCS

A0A6J1HGA0 uncharacterized protein At1g05835-like

1.1e-42

81.37

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Query:  NCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQIS
        N QC L+NITI Q MTGFQIHGMTEW  T+S NC+CSQSEVK+DC+GFQTT+SIDP ILAI+DTECLVNNGLPIF+S PITFTYAQ+PQFNFKPISSQI+
Subjt:  NCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQIS

Query:  CS
        CS
Subjt:  CS

A0A6J1KP98 protein TAPETUM DETERMINANT 1-like

3.4e-39

74.76

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Query:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI
        GNCQC+ N+I I Q M+GFQIHGMTEW VTIS  C+CSQSEVK+DC+GFQTT+SIDPS+LA++D+ECLVNNGLPIF S  ITFTYA DP+F+FK ISSQI
Subjt:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI

Query:  SCS
        +CS
Subjt:  SCS

SwissProt top hits

e value

%identity

Alignment

A8MS78 Uncharacterized protein At1g05835

2.0e-04

28.4

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Query:  EWKVTISTNC-VCSQSEVKVDCKGFQTTESIDPS---ILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISC
        +++V +   C +C    +++ C+GF  +  +DP+   +L+ S   C+VN+GLP+   + ++F Y+   QF  +P+S    C
Subjt:  EWKVTISTNC-VCSQSEVKVDCKGFQTTESIDPS---ILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISC

Arabidopsis top hits

e value

%identity

Alignment

AT1G05835.1 PHD finger protein

1.4e-05

28.4

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Query:  EWKVTISTNC-VCSQSEVKVDCKGFQTTESIDPS---ILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISC
        +++V +   C +C    +++ C+GF  +  +DP+   +L+ S   C+VN+GLP+   + ++F Y+   QF  +P+S    C
Subjt:  EWKVTISTNC-VCSQSEVKVDCKGFQTTESIDPS---ILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISC

AT4G32090.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein

2.7e-12

33.98

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Query:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI
        G C C    I I    TG +I G  EWKVT+   C C Q  V + C GF   + + P +L      CL+  G  + +     FTYA  P + F+P+ S++
Subjt:  GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQI

Query:  SCS
          S
Subjt:  SCS

Sequences

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CDS sequence

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ATGGGAAATTGCCAGTGTTTATTGAACAACATAACAATCAGCCAAAAGATGACTGGATTTCAAATCCATGGAATGACAGAATGGAAAGTGACAATAAGCACCAACTGTGT
GTGTTCTCAGTCAGAGGTGAAAGTAGATTGCAAAGGATTTCAAACTACTGAAAGCATTGATCCTTCCATCTTAGCCATTTCTGATACTGAGTGTTTGGTCAACAATGGCC
TCCCAATTTTCAGTTCCAAACCAATCACCTTCACTTATGCACAAGACCCTCAATTCAATTTCAAGCCAATCTCCTCCCAGATTTCTTGTTCTTAA

mRNA sequence

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Protein sequence

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MGNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISCS

Lsi01G007440 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome