; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G007850 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G007850
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPolyadenylate-binding protein 2-like
Genome locationchr01:6141560..6144874
RNA-Seq ExpressionLsi01G007850
SyntenyLsi01G007850
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011657966.1 polyadenylate-binding protein 3 isoform X2 [Cucumis sativus]1.5e-3596.15Show/hide
Query:  LVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        +VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA+QEALLLNE+ELHGRQLKVQQKRTNVPGMKQ
Subjt:  LVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

XP_022132735.1 polyadenylate-binding protein 3-like isoform X2 [Momordica charantia]2.0e-3598.7Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEF+EAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

XP_038882558.1 polyadenylate-binding protein 3-like isoform X1 [Benincasa hispida]8.8e-36100Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

XP_038882559.1 polyadenylate-binding protein 3-like isoform X2 [Benincasa hispida]8.8e-36100Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

XP_038882560.1 polyadenylate-binding protein 3-like isoform X3 [Benincasa hispida]5.2e-3698.72Show/hide
Query:  LVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        +VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
Subjt:  LVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

TrEMBL top hitse value%identityAlignment
A0A0A0KG83 RRM domain-containing protein1.2e-3597.4Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEA+QEALLLNE+ELHGRQLKVQQKRTNVPGMKQ
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

A0A5A7T2C2 Polyadenylate-binding protein 2-like9.5e-3698.7Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNE+ELHGRQLKVQQKRTNVPGMKQ
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

A0A6J1BTA9 polyadenylate-binding protein 3-like isoform X29.5e-3698.7Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEF+EAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

A0A6J1BTY4 polyadenylate-binding protein 3-like isoform X19.5e-3698.7Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEF+EAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

A0A6J1KVH8 polyadenylate-binding protein 3-like1.0e-3496.1Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEF+EAEAVQEALLLNESELHGRQLKVQQKRTN+PGMKQ
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

SwissProt top hitse value%identityAlignment
O14327 Polyadenylate-binding protein 21.8e-2370.51Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDY+ TPEE+Q HF SCG+VNRVTIL DKF GHPKGFAY+EF E   V  ALLLN S LH R LKV  KRTNVPGM +
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

Q93VI4 Polyadenylate-binding protein 12.9e-3488.31Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNESELHGRQ+KV  KRTNVPGM+Q
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

Q9DDY9 Polyadenylate-binding protein 2-A3.2e-2061.84Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGM
        VDY  T EE++ HF  CG+VNRVTIL DKF GHPKGFAY+EF + E+V+ +L L+ES   GRQ+KV  KRTN PG+
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGM

Q9FJN9 Polyadenylate-binding protein 21.7e-3490.91Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQQHFQ+CGTV+RVTILTDKFG PKGFAYVEFVE EAVQEAL LNESELHGRQLKV QKRTNVPG+KQ
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

Q9LX90 Polyadenylate-binding protein 31.9e-3389.61Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL LNESELHGRQLKV  KRTNVPGMKQ
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

Arabidopsis top hitse value%identityAlignment
AT5G10350.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.4e-3489.61Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL LNESELHGRQLKV  KRTNVPGMKQ
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

AT5G51120.1 polyadenylate-binding protein 12.1e-3588.31Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNESELHGRQ+KV  KRTNVPGM+Q
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

AT5G51120.2 polyadenylate-binding protein 12.1e-3588.31Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNESELHGRQ+KV  KRTNVPGM+Q
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

AT5G51120.3 polyadenylate-binding protein 12.1e-3588.31Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNESELHGRQ+KV  KRTNVPGM+Q
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ

AT5G65260.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-3590.91Show/hide
Query:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ
        VDYACTPEEVQQHFQ+CGTV+RVTILTDKFG PKGFAYVEFVE EAVQEAL LNESELHGRQLKV QKRTNVPG+KQ
Subjt:  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTTGGTTGATTATGCGTGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACGATTCTCACGGATAAATTTGGTCACCCCAA
GGGCTTCGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTCCTTTTAAATGAGTCAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGCGAACAA
ATGTTCCTGGGATGAAGCAGTTGGAAATAGCTCTTCATCCCATTGTAGTAAAAAACAAATGTTTAAAGGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGTTGGTTGATTATGCGTGTACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACGATTCTCACGGATAAATTTGGTCACCCCAA
GGGCTTCGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTCCTTTTAAATGAGTCAGAGTTGCATGGAAGACAATTGAAGGTTCAACAAAAGCGAACAA
ATGTTCCTGGGATGAAGCAGTTGGAAATAGCTCTTCATCCCATTGTAGTAAAAAACAAATGTTTAAAGGACTGA
Protein sequenceShow/hide protein sequence
MTLVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVQQKRTNVPGMKQLEIALHPIVVKNKCLKD