; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G007870 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G007870
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPolyadenylate-binding protein 2-like
Genome locationchr01:6145184..6147423
RNA-Seq ExpressionLsi01G007870
SyntenyLsi01G007870
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036316.1 polyadenylate-binding protein 2-like [Cucumis melo var. makuwa]3.1e-3597.75Show/hide
Query:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN
        MEEEEHEVYGGEIPVEEGDIDMS ADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQE+KEEADSRSVFVGN
Subjt:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN

KAG6594888.1 Polyadenylate-binding protein 3, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3589.47Show/hide
Query:  TQGRTEMEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN
        T+ RTEM+EEEHEVYGGEIPVEEGD+DM+ ADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAG+ VSQE+KEE DSRSVFVGN
Subjt:  TQGRTEMEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN

XP_004143458.1 polyadenylate-binding protein 3 isoform X1 [Cucumis sativus]9.0e-3596.63Show/hide
Query:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN
        MEEEEHEVYGGEIPVEEGDIDMS  DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQE+KEEADSRSVFVGN
Subjt:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN

XP_022132734.1 polyadenylate-binding protein 3-like isoform X1 [Momordica charantia]3.4e-3494.38Show/hide
Query:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN
        MEEEEHEVYGGEIPVEE D+DMS ADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAG+AVSQENKEE DSRSVFVGN
Subjt:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN

XP_038882559.1 polyadenylate-binding protein 3-like isoform X2 [Benincasa hispida]6.9e-3596.63Show/hide
Query:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN
        M+EEEHEVYGGEIPVEEGDIDMS ADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQE+KEEADSRSVFVGN
Subjt:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN

TrEMBL top hitse value%identityAlignment
A0A0A0KG83 RRM domain-containing protein4.4e-3596.63Show/hide
Query:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN
        MEEEEHEVYGGEIPVEEGDIDMS  DDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQE+KEEADSRSVFVGN
Subjt:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN

A0A5A7T2C2 Polyadenylate-binding protein 2-like1.5e-3597.75Show/hide
Query:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN
        MEEEEHEVYGGEIPVEEGDIDMS ADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQE+KEEADSRSVFVGN
Subjt:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN

A0A6J1BTY4 polyadenylate-binding protein 3-like isoform X11.7e-3494.38Show/hide
Query:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN
        MEEEEHEVYGGEIPVEE D+DMS ADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAG+AVSQENKEE DSRSVFVGN
Subjt:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN

A0A6J1HIK8 polyadenylate-binding protein 3-like1.8e-3391.01Show/hide
Query:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN
        M+EEEHEVYGGEIPVEEGD+DM+ ADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAG+ VSQE+KEE DSRSVFVGN
Subjt:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN

A0A6J1KVH8 polyadenylate-binding protein 3-like2.4e-3391.01Show/hide
Query:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN
        M+EEEHEVYGGEIPVEEGD+DMS ADD+AIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDP G+AVSQE+KEE DSRSVFVGN
Subjt:  MEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN

SwissProt top hitse value%identityAlignment
Q7ZXB8 Polyadenylate-binding protein 2-B1.0e-0441.24Show/hide
Query:  GRTEMEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSA----VSQENKEEADSRSVFVGN
        G  E+E+EE E        E G++      +D   EL+ +K R++EMEEEA  L+E+Q +VEK+M  +  P G+A    +S E K EAD+RS++VGN
Subjt:  GRTEMEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSA----VSQENKEEADSRSVFVGN

Q93VI4 Polyadenylate-binding protein 15.1e-1753.77Show/hide
Query:  EEEEHEVYGGEIP-VEEGDIDM-----------STADDDAI------KELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSR
        +E+EHEVYGGEIP  EEG++D            + A D+ +      ++L++MKKR+KE+EEEA ALREMQAK EK+MGA QDP+G  VS   KEE DSR
Subjt:  EEEEHEVYGGEIP-VEEGDIDM-----------STADDDAI------KELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSR

Query:  SVFVGN
        S++VGN
Subjt:  SVFVGN

Q9DDY9 Polyadenylate-binding protein 2-A1.0e-0441.24Show/hide
Query:  GRTEMEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSA----VSQENKEEADSRSVFVGN
        G  E+E+EE E        E G++      +D   EL+ +K R++EMEEEA  L+E+Q +VEK+M  +  P G+A    +S E K EAD+RS++VGN
Subjt:  GRTEMEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSA----VSQENKEEADSRSVFVGN

Q9FJN9 Polyadenylate-binding protein 24.6e-2671.72Show/hide
Query:  MEEEEHEVYGGEIP----------VEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN
        MEEEEHEVYGGEIP              D+DM+ ADDDA+KELDEMKKRLKEME+EAAALREMQAKVEKEMGA QDPA  A +Q  KEE D+RSVFVGN
Subjt:  MEEEEHEVYGGEIP----------VEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN

Q9LX90 Polyadenylate-binding protein 38.5e-2874.74Show/hide
Query:  MEEEEHEVYGGEIP------VEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN
        MEEEEHEVYGGEIP      V + DIDMS AD+DA+ EL EMK+RLKEMEEEAAALREMQAKVEKEMGA QDPA  A +QE KEE D+RSV+VGN
Subjt:  MEEEEHEVYGGEIP------VEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN

Arabidopsis top hitse value%identityAlignment
AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.0e-2974.74Show/hide
Query:  MEEEEHEVYGGEIP------VEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN
        MEEEEHEVYGGEIP      V + DIDMS AD+DA+ EL EMK+RLKEMEEEAAALREMQAKVEKEMGA QDPA  A +QE KEE D+RSV+VGN
Subjt:  MEEEEHEVYGGEIP------VEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN

AT5G10350.2 RNA-binding (RRM/RBD/RNP motifs) family protein6.0e-2974.74Show/hide
Query:  MEEEEHEVYGGEIP------VEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN
        MEEEEHEVYGGEIP      V + DIDMS AD+DA+ EL EMK+RLKEMEEEAAALREMQAKVEKEMGA QDPA  A +QE KEE D+RSV+VGN
Subjt:  MEEEEHEVYGGEIP------VEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN

AT5G51120.1 polyadenylate-binding protein 13.7e-1853.77Show/hide
Query:  EEEEHEVYGGEIP-VEEGDIDM-----------STADDDAI------KELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSR
        +E+EHEVYGGEIP  EEG++D            + A D+ +      ++L++MKKR+KE+EEEA ALREMQAK EK+MGA QDP+G  VS   KEE DSR
Subjt:  EEEEHEVYGGEIP-VEEGDIDM-----------STADDDAI------KELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSR

Query:  SVFVGN
        S++VGN
Subjt:  SVFVGN

AT5G51120.2 polyadenylate-binding protein 16.7e-1238.46Show/hide
Query:  EEEEHEVYGGEIP-VEEGDIDM-----------STADDDAI------KELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQ------------------
        +E+EHEVYGGEIP  EEG++D            + A D+ +      ++L++MKKR+KE+EEEA ALREMQAK EK+MGA Q                  
Subjt:  EEEEHEVYGGEIP-VEEGDIDM-----------STADDDAI------KELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQ------------------

Query:  -------------------DPAGSAVSQENKEEADSRSVFVGN
                           +   S VS   KEE DSRS++VGN
Subjt:  -------------------DPAGSAVSQENKEEADSRSVFVGN

AT5G65260.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.3e-2771.72Show/hide
Query:  MEEEEHEVYGGEIP----------VEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN
        MEEEEHEVYGGEIP              D+DM+ ADDDA+KELDEMKKRLKEME+EAAALREMQAKVEKEMGA QDPA  A +Q  KEE D+RSVFVGN
Subjt:  MEEEEHEVYGGEIP----------VEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTGGGATACGCCGGTTCGGACACAGGGAAGAACGGAAATGGAGGAAGAGGAGCACGAGGTTTACGGCGGAGAGATCCCGGTCGAGGAGGGTGACATTGACATGTC
TACCGCCGATGACGACGCCATCAAGGAGCTGGACGAGATGAAGAAGCGATTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAAATGCAAGCCAAAGTAGAAAAGG
AAATGGGCGCTGTTCAAGATCCTGCTGGTTCGGCTGTAAGTCAAGAAAACAAAGAGGAGGCAGATTCGCGATCCGTGTTTGTTGGCAACGGTCATTCGTTTTACCCGAAG
TTCTCAGTATTTGCTCTGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTGGGATACGCCGGTTCGGACACAGGGAAGAACGGAAATGGAGGAAGAGGAGCACGAGGTTTACGGCGGAGAGATCCCGGTCGAGGAGGGTGACATTGACATGTC
TACCGCCGATGACGACGCCATCAAGGAGCTGGACGAGATGAAGAAGCGATTGAAGGAGATGGAGGAGGAAGCAGCTGCTCTTCGCGAAATGCAAGCCAAAGTAGAAAAGG
AAATGGGCGCTGTTCAAGATCCTGCTGGTTCGGCTGTAAGTCAAGAAAACAAAGAGGAGGCAGATTCGCGATCCGTGTTTGTTGGCAACGGTCATTCGTTTTACCCGAAG
TTCTCAGTATTTGCTCTGGGATGA
Protein sequenceShow/hide protein sequence
MKWDTPVRTQGRTEMEEEEHEVYGGEIPVEEGDIDMSTADDDAIKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGSAVSQENKEEADSRSVFVGNGHSFYPK
FSVFALG