CuGenDBv2

Gene ID	Lsi01G008100
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	MADS-box protein SVP-like
Genome location	chr01:6424709..6425024
RNA-Seq Expression	Lsi01G008100
Synteny	Lsi01G008100
Gene Ontology terms	GO:0009266 - response to temperature stimulus (biological process) GO:0009910 - negative regulation of flower development (biological process) GO:0017148 - negative regulation of translation (biological process) GO:0045892 - negative regulation of transcription, DNA-templated (biological process) GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process) GO:0005634 - nucleus (cellular component) GO:0000900 - translation repressor activity, mRNA regulatory element binding (molecular function) GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036343.1 MADS-box protein SVP-like [Cucumis melo var. makuwa]

6.5e-26

95.59

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Query:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG
        +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLESSDTSLKLG
Subjt:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG

XP_004143442.1 MADS-box protein SVP isoform X1 [Cucumis sativus]

6.5e-26

95.59

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Query:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG
        +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLESSDTSLKLG
Subjt:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG

XP_008440538.1 PREDICTED: MADS-box protein SVP-like [Cucumis melo]

6.5e-26

95.59

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Query:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG
        +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLESSDTSLKLG
Subjt:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG

XP_011657948.1 MADS-box protein SVP isoform X2 [Cucumis sativus]

6.5e-26

95.59

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Query:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG
        +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLESSDTSLKLG
Subjt:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG

XP_038883728.1 MADS-box protein SVP-like [Benincasa hispida]

5.0e-26

95.59

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Query:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG
        +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVT+ACVSNSNGPPQDLESSDTSLKLG
Subjt:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIR9 K-box domain-containing protein

3.1e-26

95.59

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Query:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG
        +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLESSDTSLKLG
Subjt:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG

A0A1S3B1C2 MADS-box protein SVP-like

3.1e-26

95.59

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Query:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG
        +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLESSDTSLKLG
Subjt:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG

A0A5D3CLB3 MADS-box protein SVP-like

3.1e-26

95.59

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Query:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG
        +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLESSDTSLKLG
Subjt:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG

A0A6J1HEK8 MADS-box protein JOINTLESS-like

2.1e-22

81.69

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Query:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLGYLF
        +SAEL++ENKRLK+QAEKM+ VR+ GVEPEILVVEDGQSSNSVTEACV+NSNGP QDLESSDTSLKLG  +
Subjt:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLGYLF

A0A6J1KUX0 MADS-box protein JOINTLESS-like

7.2e-23

81.69

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Query:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLGYLF
        +SAEL++ENKRLK+QAEKM+ VRH GVEPEI+VVEDGQSSNSVTEACV+NSNGP QDLESSDTSLKLG  +
Subjt:  QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLGYLF

SwissProt top hits

e value

%identity

Alignment

Q5K4R0 MADS-box transcription factor 47

9.4e-04

42.47

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Query:  ELMDENKRLKQQAE--KMNAVRHLGVEPEI-LVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLGYLFIS
        +L++EN RLK+Q +  +M+ +  +   P+  +V E+GQSS SVT A  S    PP +  SSDTSL+LG    S
Subjt:  ELMDENKRLKQQAE--KMNAVRHLGVEPEI-LVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLGYLFIS

Q9FUY6 MADS-box protein JOINTLESS

5.0e-05

46.84

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Query:  LMDENKRLKQQAEKM--------NAVRHLGV---EPEILV----VEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG
        LM+EN++L+QQ  ++        N  R  GV   EPE        EDGQSS SVT  C ++ + PPQD +SSDTSLKLG
Subjt:  LMDENKRLKQQAEKM--------NAVRHLGV---EPEILV----VEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG

Q9FVC1 MADS-box protein SVP

5.4e-07

48.1

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Query:  ELMDENKRLKQQAEKM-------------NAVRHLGVEPE-ILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG
        +LMDENKRL+QQ  ++             N   H G E E   V E+GQSS S+T A   NS G P D ESSDTSL+LG
Subjt:  ELMDENKRLKQQAEKM-------------NAVRHLGVEPE-ILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG

Arabidopsis top hits

e value

%identity

Alignment

AT2G22540.1 K-box region and MADS-box transcription factor family protein

3.8e-08

48.1

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Query:  ELMDENKRLKQQAEKM-------------NAVRHLGVEPE-ILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG
        +LMDENKRL+QQ  ++             N   H G E E   V E+GQSS S+T A   NS G P D ESSDTSL+LG
Subjt:  ELMDENKRLKQQAEKM-------------NAVRHLGVEPE-ILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG

AT2G22540.2 K-box region and MADS-box transcription factor family protein

3.8e-08

48.1

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Query:  ELMDENKRLKQQAEKM-------------NAVRHLGVEPE-ILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG
        +LMDENKRL+QQ  ++             N   H G E E   V E+GQSS S+T A   NS G P D ESSDTSL+LG
Subjt:  ELMDENKRLKQQAEKM-------------NAVRHLGVEPE-ILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLG

Sequences

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CDS sequence

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ATGTGCATGCAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTGAAACAACAAGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTTGAGCCCGAGATTTTGGTCGT
GGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGCTTGTGTCTCCAATTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGTATCTCT
TCATTTCATGA

mRNA sequence

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Protein sequence

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MCMQSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLGYLFIS

Lsi01G008100 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome