; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G008150 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G008150
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein SKIP34
Genome locationchr01:6456216..6456506
RNA-Seq ExpressionLsi01G008150
SyntenyLsi01G008150
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008440533.1 PREDICTED: protein SKIP34 [Cucumis melo]6.0e-3789.58Show/hide
Query:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK
        MCNGHHR LF+G   PYQTSVPENG ASVVDNLRGRLEETE RLAQVRARE ELSRLLEEMKR+VSVMEILENYLKRQYSDRQEYVVRLLSPVS K
Subjt:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK

XP_011657944.1 protein SKIP34 [Cucumis sativus]2.7e-3789.58Show/hide
Query:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK
        MCNGHHR LF+G L PYQTSVPENG  SVVDNLRGRLEETE RLAQVRARE ELSRLLEEMKR+VSVMEILENYLKRQYSDRQEYVVRLLSPVS K
Subjt:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK

XP_022950522.1 protein SKIP34 [Cucurbita moschata]1.1e-3587.63Show/hide
Query:  MCNGHHRSLFKGILSPYQTSVPEN-GDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK
        MCNGHHRSLF+G +SP QTSVPEN GDASVVDNLRGRL ETESRLAQVRARE  LSRLLEEMKR+VSVMEILENYLKR+YSDRQEYVVRLL+PVS K
Subjt:  MCNGHHRSLFKGILSPYQTSVPEN-GDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK

XP_022978829.1 protein SKIP34 [Cucurbita maxima]1.9e-3584.38Show/hide
Query:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK
        MCNGHHRSLF+G +SP QTSVPENGDASVVDNLRGRL ETESRLAQVRARE  LSR+LEEMKR+VSVMEIL+NYLKR+Y DRQEYVVRLL+P+S K
Subjt:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK

XP_023544310.1 protein SKIP34 [Cucurbita pepo subsp. pepo]5.1e-3686.46Show/hide
Query:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK
        MCNGHHRSLF+G +SP QTSVPENGDASVVDNLRGRL ETESRLAQVRARE  LSRLLEEMKR+V VMEILENYLKR+Y DRQEYVVRLL+PVS K
Subjt:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK

TrEMBL top hitse value%identityAlignment
A0A0A0KIR5 Uncharacterized protein1.3e-3789.58Show/hide
Query:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK
        MCNGHHR LF+G L PYQTSVPENG  SVVDNLRGRLEETE RLAQVRARE ELSRLLEEMKR+VSVMEILENYLKRQYSDRQEYVVRLLSPVS K
Subjt:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK

A0A1S3B1B8 protein SKIP342.9e-3789.58Show/hide
Query:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK
        MCNGHHR LF+G   PYQTSVPENG ASVVDNLRGRLEETE RLAQVRARE ELSRLLEEMKR+VSVMEILENYLKRQYSDRQEYVVRLLSPVS K
Subjt:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK

A0A5D3CN14 Protein SKIP342.9e-3789.58Show/hide
Query:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK
        MCNGHHR LF+G   PYQTSVPENG ASVVDNLRGRLEETE RLAQVRARE ELSRLLEEMKR+VSVMEILENYLKRQYSDRQEYVVRLLSPVS K
Subjt:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK

A0A6J1GF20 protein SKIP345.5e-3687.63Show/hide
Query:  MCNGHHRSLFKGILSPYQTSVPEN-GDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK
        MCNGHHRSLF+G +SP QTSVPEN GDASVVDNLRGRL ETESRLAQVRARE  LSRLLEEMKR+VSVMEILENYLKR+YSDRQEYVVRLL+PVS K
Subjt:  MCNGHHRSLFKGILSPYQTSVPEN-GDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK

A0A6J1IV54 protein SKIP349.4e-3684.38Show/hide
Query:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK
        MCNGHHRSLF+G +SP QTSVPENGDASVVDNLRGRL ETESRLAQVRARE  LSR+LEEMKR+VSVMEIL+NYLKR+Y DRQEYVVRLL+P+S K
Subjt:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK

SwissProt top hitse value%identityAlignment
Q8GWU7 Protein SKIP345.5e-1752.08Show/hide
Query:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK
        MC GH++SL     S  +    +  D SVVD+LR RL ETE+RL + RARE ELSR LE MKR VSVMEI+E +L+R++ ++++ + RL SPVS K
Subjt:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK

Arabidopsis top hitse value%identityAlignment
AT5G65495.1 unknown protein3.9e-1852.08Show/hide
Query:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK
        MC GH++SL     S  +    +  D SVVD+LR RL ETE+RL + RARE ELSR LE MKR VSVMEI+E +L+R++ ++++ + RL SPVS K
Subjt:  MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAACGGCCACCACCGATCTTTGTTCAAAGGTATCCTTTCTCCCTACCAGACCTCCGTACCAGAAAACGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATT
AGAGGAAACCGAGTCGCGGCTAGCTCAAGTTAGGGCTCGAGAGGTAGAGCTCAGCCGACTCTTGGAGGAAATGAAACGAATAGTCTCTGTGATGGAGATCCTCGAGAACT
ACCTGAAACGGCAGTACAGCGACCGCCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTATAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTAACGGCCACCACCGATCTTTGTTCAAAGGTATCCTTTCTCCCTACCAGACCTCCGTACCAGAAAACGGCGACGCTTCCGTTGTGGACAATCTACGGGGTCGATT
AGAGGAAACCGAGTCGCGGCTAGCTCAAGTTAGGGCTCGAGAGGTAGAGCTCAGCCGACTCTTGGAGGAAATGAAACGAATAGTCTCTGTGATGGAGATCCTCGAGAACT
ACCTGAAACGGCAGTACAGCGACCGCCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTATAAAATAG
Protein sequenceShow/hide protein sequence
MCNGHHRSLFKGILSPYQTSVPENGDASVVDNLRGRLEETESRLAQVRAREVELSRLLEEMKRIVSVMEILENYLKRQYSDRQEYVVRLLSPVSIK