; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G008260 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G008260
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr01:6554194..6554499
RNA-Seq ExpressionLsi01G008260
SyntenyLsi01G008260
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057639.1 hypothetical protein E6C27_scaffold25649G00010 [Cucumis melo var. makuwa]5.5e-4186.54Show/hide
Query:  MERDLGCRRLPYLSGCVPASP-ACFPIHEG-VEYSRIHGGGGGGKRSGWRWRYLLRRWVKDSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN-SRENEI
        MERDLGC RLPYLSGCVPASP ACFP+HEG V Y+RIH GG GGKRS WRWRYLLR+WVKDSMSIYGSKSLSFQYDAVSYSQNFDEGSR YE+ +RENEI
Subjt:  MERDLGCRRLPYLSGCVPASP-ACFPIHEG-VEYSRIHGGGGGGKRSGWRWRYLLRRWVKDSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN-SRENEI

Query:  GISR
        GISR
Subjt:  GISR

KAG6594915.1 hypothetical protein SDJN03_11468, partial [Cucurbita argyrosperma subsp. sororia]3.2e-3676.19Show/hide
Query:  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIH----GGGGGGKRSGWRWRYLLRRWVKDSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYENSRENE
        ME DL  RRLPYLS CV AS  CFPIHEGVEYSRI+    GGGGGGKR GWRWRYLLRRW+KD M++YG+KSLSFQYDAVSYSQNFD+G  +YE +RENE
Subjt:  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIH----GGGGGGKRSGWRWRYLLRRWVKDSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYENSRENE

Query:  IGISR
        I ISR
Subjt:  IGISR

KGN48682.1 hypothetical protein Csa_003439 [Cucumis sativus]1.2e-4387.25Show/hide
Query:  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN-SRENEIGI
        M+RDLGCRRLPYLSGCVP+SPACFPIHEGVEY+RIH GG G KRSGWRWRYLLR+WVKD M+IYGSKSLSFQYDAVSYSQNFDEGSR YE+  RENEIGI
Subjt:  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN-SRENEIGI

Query:  SR
        SR
Subjt:  SR

OAY35690.1 hypothetical protein MANES_12G121900v8 [Manihot esculenta]2.1e-1959.38Show/hide
Query:  MERDLGC----RRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKD-SMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN
        MERDL      RR   LSGC+  SP+CFP+HE +EYSRIH       + G RWR L+RR V+D   S+YGSK LSF YDAVSYSQNFDEGS Y E+
Subjt:  MERDLGC----RRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKD-SMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN

XP_022741710.1 uncharacterized protein LOC111293198 [Durio zibethinus]1.4e-2063.04Show/hide
Query:  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDSM-SIYGSKSLSFQYDAVSYSQNFDEGSRYYEN
        MERDLG RR  Y SGC   SP+CFP+HE +EYSRIH      KR   RWR LLRR ++D   SIYGSK LSF YDAVSYSQNFDEG  + E+
Subjt:  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDSM-SIYGSKSLSFQYDAVSYSQNFDEGSRYYEN

TrEMBL top hitse value%identityAlignment
A0A061DHC4 Uncharacterized protein3.8e-1956.12Show/hide
Query:  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKD-SMSIYGSKSLSFQYDAVSYSQNFDEGSRYYENSRENEI
        MERDL  RR  Y SGC+  SP+CFP+HE +EYSRIH       ++  RWR LLRR V+D   SIYGSK LSF YDAVSYSQNFD+G  + E+     +
Subjt:  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKD-SMSIYGSKSLSFQYDAVSYSQNFDEGSRYYENSRENEI

A0A0A0KJW1 Uncharacterized protein5.8e-4487.25Show/hide
Query:  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN-SRENEIGI
        M+RDLGCRRLPYLSGCVP+SPACFPIHEGVEY+RIH GG G KRSGWRWRYLLR+WVKD M+IYGSKSLSFQYDAVSYSQNFDEGSR YE+  RENEIGI
Subjt:  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN-SRENEIGI

Query:  SR
        SR
Subjt:  SR

A0A2C9UX38 Uncharacterized protein9.9e-2059.38Show/hide
Query:  MERDLGC----RRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKD-SMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN
        MERDL      RR   LSGC+  SP+CFP+HE +EYSRIH       + G RWR L+RR V+D   S+YGSK LSF YDAVSYSQNFDEGS Y E+
Subjt:  MERDLGC----RRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKD-SMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN

A0A5D3BBB9 Uncharacterized protein2.7e-4186.54Show/hide
Query:  MERDLGCRRLPYLSGCVPASP-ACFPIHEG-VEYSRIHGGGGGGKRSGWRWRYLLRRWVKDSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN-SRENEI
        MERDLGC RLPYLSGCVPASP ACFP+HEG V Y+RIH GG GGKRS WRWRYLLR+WVKDSMSIYGSKSLSFQYDAVSYSQNFDEGSR YE+ +RENEI
Subjt:  MERDLGCRRLPYLSGCVPASP-ACFPIHEG-VEYSRIHGGGGGGKRSGWRWRYLLRRWVKDSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN-SRENEI

Query:  GISR
        GISR
Subjt:  GISR

A0A6P5YN44 uncharacterized protein LOC1112931986.9e-2163.04Show/hide
Query:  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDSM-SIYGSKSLSFQYDAVSYSQNFDEGSRYYEN
        MERDLG RR  Y SGC   SP+CFP+HE +EYSRIH      KR   RWR LLRR ++D   SIYGSK LSF YDAVSYSQNFDEG  + E+
Subjt:  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDSM-SIYGSKSLSFQYDAVSYSQNFDEGSRYYEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGAGATCTCGGCTGCCGTCGACTGCCCTACCTCTCCGGCTGCGTTCCCGCTTCTCCAGCATGCTTTCCGATCCACGAAGGTGTGGAGTACTCGCGCATCCACGG
CGGCGGCGGAGGTGGCAAAAGAAGCGGCTGGAGATGGCGATATCTTCTGAGGAGGTGGGTGAAGGATAGCATGAGTATATATGGATCGAAATCTCTGTCTTTCCAATACG
ACGCCGTTAGCTATTCGCAGAATTTTGACGAGGGGAGCCGTTACTATGAGAACAGTCGAGAAAATGAGATTGGGATTTCGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGAGATCTCGGCTGCCGTCGACTGCCCTACCTCTCCGGCTGCGTTCCCGCTTCTCCAGCATGCTTTCCGATCCACGAAGGTGTGGAGTACTCGCGCATCCACGG
CGGCGGCGGAGGTGGCAAAAGAAGCGGCTGGAGATGGCGATATCTTCTGAGGAGGTGGGTGAAGGATAGCATGAGTATATATGGATCGAAATCTCTGTCTTTCCAATACG
ACGCCGTTAGCTATTCGCAGAATTTTGACGAGGGGAGCCGTTACTATGAGAACAGTCGAGAAAATGAGATTGGGATTTCGAGATGA
Protein sequenceShow/hide protein sequence
MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYENSRENEIGISR