CuGenDBv2

Gene ID	Lsi01G008580
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	protein CROWDED NUCLEI 4
Genome location	chr01:6881572..6881832
RNA-Seq Expression	Lsi01G008580
Synteny	Lsi01G008580
Gene Ontology terms	GO:0006997 - nucleus organization (biological process) GO:0005652 - nuclear lamina (cellular component)
InterPro domains	IPR040418 - Protein crowded nuclei

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036387.1 protein CROWDED NUCLEI 4 [Cucumis melo var. makuwa]

7.3e-26

97.06

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Query:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADE IWRRLKEAGFDEESIKRRDKAALIAYIAKLEAE+
Subjt:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

KGN48646.1 hypothetical protein Csa_003504 [Cucumis sativus]

1.6e-25

95.59

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Query:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        MASPQSAG+TLSSGKGLSLTPGSRVLQTPLADE IWRRLKEAGFDEESIKRRDKAALIAYIAKLEAE+
Subjt:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

XP_008440443.1 PREDICTED: protein CROWDED NUCLEI 4 [Cucumis melo]

7.3e-26

97.06

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Query:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADE IWRRLKEAGFDEESIKRRDKAALIAYIAKLEAE+
Subjt:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

XP_038881729.1 protein CROWDED NUCLEI 4 isoform X1 [Benincasa hispida]

1.6e-25

95.59

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Query:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        MASPQSAGVTLSSGKGLSLTPGSRVLQTPL DE IWRRLKEAGFDEESIKRRDKAALIAYIAKLEAE+
Subjt:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

XP_038881730.1 protein CROWDED NUCLEI 4 isoform X2 [Benincasa hispida]

1.6e-25

95.59

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Query:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        MASPQSAGVTLSSGKGLSLTPGSRVLQTPL DE IWRRLKEAGFDEESIKRRDKAALIAYIAKLEAE+
Subjt:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KLL3 Uncharacterized protein

7.9e-26

95.59

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Query:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        MASPQSAG+TLSSGKGLSLTPGSRVLQTPLADE IWRRLKEAGFDEESIKRRDKAALIAYIAKLEAE+
Subjt:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

A0A1S3B1R4 protein CROWDED NUCLEI 4

3.5e-26

97.06

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Query:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADE IWRRLKEAGFDEESIKRRDKAALIAYIAKLEAE+
Subjt:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

A0A5D3CLK9 Protein CROWDED NUCLEI 4

3.5e-26

97.06

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Query:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADE IWRRLKEAGFDEESIKRRDKAALIAYIAKLEAE+
Subjt:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

A0A6J1IKL2 protein CROWDED NUCLEI 4-like isoform X2

5.1e-25

92.65

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Query:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        MASPQSAGVTL+SGKGLSLTPGSRVLQTPLADE IWRRLK+AG DEESIKRRDKAALIAYIAKLEAE+
Subjt:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

A0A6J1IQP5 protein CROWDED NUCLEI 4-like isoform X1

5.1e-25

92.65

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Query:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        MASPQSAGVTL+SGKGLSLTPGSRVLQTPLADE IWRRLK+AG DEESIKRRDKAALIAYIAKLEAE+
Subjt:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

SwissProt top hits

e value

%identity

Alignment

Q0JJ05 Nuclear matrix constituent protein 1b

6.9e-11

54.41

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Query:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        MASP+SAG     G G   + G+        D+ IW +L+EAGFDEES+KRRDKAALIAYI++LE+E+
Subjt:  MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

Q9FLH0 Protein CROWDED NUCLEI 4

3.5e-15

73.08

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Query:  LSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        L++TP SRVL++PL +E +W+RLK+AGFDE+SIK RDKAALIAYIAKLE+EV
Subjt:  LSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

Arabidopsis top hits

e value

%identity

Alignment

AT5G65770.1 little nuclei4

2.5e-16

73.08

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Query:  LSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        L++TP SRVL++PL +E +W+RLK+AGFDE+SIK RDKAALIAYIAKLE+EV
Subjt:  LSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

AT5G65770.2 little nuclei4

2.5e-16

73.08

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Query:  LSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        L++TP SRVL++PL +E +W+RLK+AGFDE+SIK RDKAALIAYIAKLE+EV
Subjt:  LSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

AT5G65770.3 little nuclei4

2.5e-16

73.08

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Query:  LSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        L++TP SRVL++PL +E +W+RLK+AGFDE+SIK RDKAALIAYIAKLE+EV
Subjt:  LSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

AT5G65780.2 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)

2.5e-16

73.08

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Query:  LSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV
        L++TP SRVL++PL +E +W+RLK+AGFDE+SIK RDKAALIAYIAKLE+EV
Subjt:  LSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEV

Sequences

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CDS sequence

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ATGGCGAGTCCGCAGTCGGCCGGAGTTACTTTGAGTTCCGGTAAGGGTTTGTCTCTGACACCTGGTTCTAGGGTTTTGCAAACCCCACTTGCCGATGAAACTATCTGGAG
GCGTCTGAAAGAAGCTGGTTTCGACGAGGAATCCATTAAACGTAGGGATAAAGCTGCGCTTATAGCTTATATTGCTAAGCTCGAAGCTGAGGTTTGCCTTCTTCAGTTTT
TGAGATTTACACTTAGTTTATCTACTCTAGTTTTGTATTAA

mRNA sequence

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Protein sequence

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MASPQSAGVTLSSGKGLSLTPGSRVLQTPLADETIWRRLKEAGFDEESIKRRDKAALIAYIAKLEAEVCLLQFLRFTLSLSTLVLY

Lsi01G008580 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome