; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi01G008890 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi01G008890
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMYB transcription factor
Genome locationchr01:7165905..7172738
RNA-Seq ExpressionLsi01G008890
SyntenyLsi01G008890
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003691 - double-stranded telomeric DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR044597 - Single myb histone 1-6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008440400.1 PREDICTED: telomere repeat-binding factor 2 isoform X1 [Cucumis melo]1.8e-5093.18Show/hide
Query:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA
        NG L +VKHKYRIAPNSPL GRRNAPLLLLEDKQ DSSKTEKSEVKIITKSQVD ELSKMKVMTAEEAAIAAARAVAEAEAAI EAERAAREAE+AEAEA
Subjt:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA

Query:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQE
        ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ+
Subjt:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQE

XP_011657903.1 telomere repeat-binding factor 2 isoform X1 [Cucumis sativus]1.1e-5093.18Show/hide
Query:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA
        NG L +VKHKYRIAPNSPL GRRN PLLLLEDKQ DSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAI EAERAAREAE+AEAEA
Subjt:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA

Query:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQE
        ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ+
Subjt:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQE

XP_011657905.1 telomere repeat-binding factor 2 isoform X2 [Cucumis sativus]2.3e-5093.89Show/hide
Query:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA
        NG L +VKHKYRIAPNSPL GRRN PLLLLEDKQ DSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAI EAERAAREAE+AEAEA
Subjt:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA

Query:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ
        ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ
Subjt:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ

XP_038883921.1 telomere repeat-binding factor 2 isoform X1 [Benincasa hispida]8.1e-5192.42Show/hide
Query:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA
        NG L +VKHKYRIAPNSPLSGRR+APLLLLEDKQMDSSKTEK+EVKIITKSQVDSELSKM+VMTAEEAAIAAARAVAEAEAAI EAERAAREAEEAEAEA
Subjt:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA

Query:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQE
        ETAQVFAEAAMKALECRTFP+RSP+QKVLLQ+
Subjt:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQE

XP_038883922.1 telomere repeat-binding factor 2 isoform X2 [Benincasa hispida]1.8e-5093.13Show/hide
Query:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA
        NG L +VKHKYRIAPNSPLSGRR+APLLLLEDKQMDSSKTEK+EVKIITKSQVDSELSKM+VMTAEEAAIAAARAVAEAEAAI EAERAAREAEEAEAEA
Subjt:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA

Query:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ
        ETAQVFAEAAMKALECRTFP+RSP+QKVLLQ
Subjt:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ

TrEMBL top hitse value%identityAlignment
A0A0A0KJQ2 MYB transcription factor1.1e-5093.89Show/hide
Query:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA
        NG L +VKHKYRIAPNSPL GRRN PLLLLEDKQ DSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAI EAERAAREAE+AEAEA
Subjt:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA

Query:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ
        ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ
Subjt:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ

A0A1S3B118 MYB transcription factor4.8e-4995.24Show/hide
Query:  VKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVF
        VKHKYRIAPNSPL GRRNAPLLLLEDKQ DSSKTEKSEVKIITKSQVD ELSKMKVMTAEEAAIAAARAVAEAEAAI EAERAAREAE+AEAEAETAQVF
Subjt:  VKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVF

Query:  AEAAMKALECRTFPNRSPIQKVLLQE
        AEAAMKALECRTFPNRSPIQKVLLQ+
Subjt:  AEAAMKALECRTFPNRSPIQKVLLQE

A0A1S3B132 MYB transcription factor1.9e-5093.89Show/hide
Query:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA
        NG L +VKHKYRIAPNSPL GRRNAPLLLLEDKQ DSSKTEKSEVKIITKSQVD ELSKMKVMTAEEAAIAAARAVAEAEAAI EAERAAREAE+AEAEA
Subjt:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA

Query:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ
        ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ
Subjt:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ

A0A1S3B1N4 MYB transcription factor8.7e-5193.18Show/hide
Query:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA
        NG L +VKHKYRIAPNSPL GRRNAPLLLLEDKQ DSSKTEKSEVKIITKSQVD ELSKMKVMTAEEAAIAAARAVAEAEAAI EAERAAREAE+AEAEA
Subjt:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA

Query:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQE
        ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ+
Subjt:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQE

A0A5A7T4X2 MYB transcription factor1.9e-5093.89Show/hide
Query:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA
        NG L +VKHKYRIAPNSPL GRRNAPLLLLEDKQ DSSKTEKSEVKIITKSQVD ELSKMKVMTAEEAAIAAARAVAEAEAAI EAERAAREAE+AEAEA
Subjt:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA

Query:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ
        ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ
Subjt:  ETAQVFAEAAMKALECRTFPNRSPIQKVLLQ

SwissProt top hitse value%identityAlignment
C0HIA3 Single myb histone 63.1e-2158.12Show/hide
Query:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA
        +G L +V  KYRIAP+SP S RR+  + LLED Q +  K    + K +T+SQVD+EL++M  MTAEEA++AAARAVAEAEA + EAE AA+EAE AEAEA
Subjt:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA

Query:  ETAQVFAEAAMKALECR
        + AQ FAEAA   L+ R
Subjt:  ETAQVFAEAAMKALECR

Q6WLH3 Single myb histone 51.1e-1352.14Show/hide
Query:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA
        +G L +V  KYRIAP+            LLED Q +  K      + +T+SQVD+EL +M  MT E AA AAA AVAEAEA + EAE AAREAE AEAEA
Subjt:  NGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA

Query:  ETAQVFAEAAMKALECR
          AQ FAEAA+  L+ R
Subjt:  ETAQVFAEAAMKALECR

Q8VWK4 Telomere repeat-binding factor 14.6e-1754.17Show/hide
Query:  GVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSS----KTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAE
        G L +VK KYRI  ++PLS  R   L +   KQ  SS    KT+  EV   T+SQ+D+E+++MK M   EAA  AA+AVAEAEAA+ EAE AA+EAE AE
Subjt:  GVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSS----KTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAE

Query:  AEAETAQVFAEAAMKALECR
        AEAE AQ FAE A K L+ R
Subjt:  AEAETAQVFAEAAMKALECR

Q9FJW5 Telomere repeat-binding factor 24.5e-2057.98Show/hide
Query:  NGVLTRVKHKYRIAPN-SPLSGRRNAPLLLLE-DKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEA
        NG L ++KHKYR + N  P   R+ AP L LE + + D +K E++    +TK +VD EL  +K MTA+EAA AAARAVAEAE AI EAE+AA+EAE AEA
Subjt:  NGVLTRVKHKYRIAPN-SPLSGRRNAPLLLLE-DKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEA

Query:  EAETAQVFAEAAMKALECR
        EAE AQ+FA+AAMKAL+ R
Subjt:  EAETAQVFAEAAMKALECR

Q9M2X3 Telomere repeat-binding factor 31.4e-1655.56Show/hide
Query:  GVLTRVKHKYRIAPNSPLSGR-RNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA
        G L + KHKYRI+ N    G  + +P LLLE  + ++ K E++ VK +TKSQV  E+  M  MT +EAA AAARAVAEAE A+ EAE AAREA++AEAEA
Subjt:  GVLTRVKHKYRIAPNSPLSGR-RNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEA

Query:  ETAQVFAEAAMKALECR
        E A +FA+AAMKA++ R
Subjt:  ETAQVFAEAAMKALECR

Arabidopsis top hitse value%identityAlignment
AT1G49950.1 telomere repeat binding factor 13.3e-1854.17Show/hide
Query:  GVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSS----KTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAE
        G L +VK KYRI  ++PLS  R   L +   KQ  SS    KT+  EV   T+SQ+D+E+++MK M   EAA  AA+AVAEAEAA+ EAE AA+EAE AE
Subjt:  GVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSS----KTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAE

Query:  AEAETAQVFAEAAMKALECR
        AEAE AQ FAE A K L+ R
Subjt:  AEAETAQVFAEAAMKALECR

AT1G49950.2 telomere repeat binding factor 13.3e-1854.17Show/hide
Query:  GVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSS----KTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAE
        G L +VK KYRI  ++PLS  R   L +   KQ  SS    KT+  EV   T+SQ+D+E+++MK M   EAA  AA+AVAEAEAA+ EAE AA+EAE AE
Subjt:  GVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSS----KTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAE

Query:  AEAETAQVFAEAAMKALECR
        AEAE AQ FAE A K L+ R
Subjt:  AEAETAQVFAEAAMKALECR

AT1G49950.3 telomere repeat binding factor 13.3e-1854.17Show/hide
Query:  GVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSS----KTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAE
        G L +VK KYRI  ++PLS  R   L +   KQ  SS    KT+  EV   T+SQ+D+E+++MK M   EAA  AA+AVAEAEAA+ EAE AA+EAE AE
Subjt:  GVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSS----KTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAE

Query:  AEAETAQVFAEAAMKALECR
        AEAE AQ FAE A K L+ R
Subjt:  AEAETAQVFAEAAMKALECR

AT5G67580.1 Homeodomain-like/winged-helix DNA-binding family protein3.2e-2157.98Show/hide
Query:  NGVLTRVKHKYRIAPN-SPLSGRRNAPLLLLE-DKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEA
        NG L ++KHKYR + N  P   R+ AP L LE + + D +K E++    +TK +VD EL  +K MTA+EAA AAARAVAEAE AI EAE+AA+EAE AEA
Subjt:  NGVLTRVKHKYRIAPN-SPLSGRRNAPLLLLE-DKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEA

Query:  EAETAQVFAEAAMKALECR
        EAE AQ+FA+AAMKAL+ R
Subjt:  EAETAQVFAEAAMKALECR

AT5G67580.2 Homeodomain-like/winged-helix DNA-binding family protein3.2e-2157.98Show/hide
Query:  NGVLTRVKHKYRIAPN-SPLSGRRNAPLLLLE-DKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEA
        NG L ++KHKYR + N  P   R+ AP L LE + + D +K E++    +TK +VD EL  +K MTA+EAA AAARAVAEAE AI EAE+AA+EAE AEA
Subjt:  NGVLTRVKHKYRIAPN-SPLSGRRNAPLLLLE-DKQMDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEA

Query:  EAETAQVFAEAAMKALECR
        EAE AQ+FA+AAMKAL+ R
Subjt:  EAETAQVFAEAAMKALECR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTTAGCTTTATGCAATTCTCAGTTCTTTCTTCTTACCTTGATGCCTCTACATGATTGTTTTTTTGTTGACAAAAATGGCGTTGGGTCAGTGAGGAGTAAGGGCAA
CCTTGGTGTATGGAAGAGAACTACTTGCAAGAGTGCTAGCCATCCCGAGAATGGAGTCCTGACACGGGTAAAGCATAAGTACAGAATTGCTCCAAATTCTCCCTTATCTG
GAAGAAGAAATGCTCCATTGTTACTCCTTGAGGACAAGCAGATGGATTCTTCAAAGACCGAGAAGAGTGAAGTCAAAATTATCACTAAATCCCAGGTTGACTCAGAACTT
TCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGTAGAGGCTGAAAGGGCAGCAAGAGAAGCAGA
AGAAGCAGAGGCTGAAGCTGAAACAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCCAATAGAAGTCCTATTCAGAAAGTTCTTCTCC
AAGAATATGATTACCTTATGAGCAAGACGGCTGCTGGGGATCATATCATCAGAAGTGTATGTCGCTATGGAAATGAACGCCACTTACAAGAGAAACGAATCAACCCATTA
TTAGTTTTGGTTACTGGCTCTGAAGAGTTATTGCCATCTCTTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCTTAGCTTTATGCAATTCTCAGTTCTTTCTTCTTACCTTGATGCCTCTACATGATTGTTTTTTTGTTGACAAAAATGGCGTTGGGTCAGTGAGGAGTAAGGGCAA
CCTTGGTGTATGGAAGAGAACTACTTGCAAGAGTGCTAGCCATCCCGAGAATGGAGTCCTGACACGGGTAAAGCATAAGTACAGAATTGCTCCAAATTCTCCCTTATCTG
GAAGAAGAAATGCTCCATTGTTACTCCTTGAGGACAAGCAGATGGATTCTTCAAAGACCGAGAAGAGTGAAGTCAAAATTATCACTAAATCCCAGGTTGACTCAGAACTT
TCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGTAGAGGCTGAAAGGGCAGCAAGAGAAGCAGA
AGAAGCAGAGGCTGAAGCTGAAACAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCCAATAGAAGTCCTATTCAGAAAGTTCTTCTCC
AAGAATATGATTACCTTATGAGCAAGACGGCTGCTGGGGATCATATCATCAGAAGTGTATGTCGCTATGGAAATGAACGCCACTTACAAGAGAAACGAATCAACCCATTA
TTAGTTTTGGTTACTGGCTCTGAAGAGTTATTGCCATCTCTTGTTTGA
Protein sequenceShow/hide protein sequence
MTLALCNSQFFLLTLMPLHDCFFVDKNGVGSVRSKGNLGVWKRTTCKSASHPENGVLTRVKHKYRIAPNSPLSGRRNAPLLLLEDKQMDSSKTEKSEVKIITKSQVDSEL
SKMKVMTAEEAAIAAARAVAEAEAAIVEAERAAREAEEAEAEAETAQVFAEAAMKALECRTFPNRSPIQKVLLQEYDYLMSKTAAGDHIIRSVCRYGNERHLQEKRINPL
LVLVTGSEELLPSLV